Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z46375 > DF106 > DF104 > DF105 > FGC4108/S588 > S603

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B177505
BigY2
B177505
Manual
Edits
26073842-G-T 23927695-G-T P1_Y1 ***A*
28817836-G-A 26671689-G-A A*
20013353-G-A 17901473-G-A P5_Prx ***A*
25994364-G-A 23848217-G-A P1_Y1 ***A*
24293817-G-A 22147670-G-A P3_t1 ***A*
22274655-T-A 20112769-T-A DYZ19 ***A*
2912020-A-C 3043979-A-C Y81784 YY++
6144971-A-G 6276930-A-G BY59278 IR3_Dst ++
23388535-G-A 21226649-G-A Y111435 YY++
23254488-AAAATAAAT-A 21092602-AAAATAAAT-A 6×AAAT++
23246257-C-G 21084371-C-G Y111067 YY++
16696846-A-G 14584966-A-G Y97055 YY**+
14801391-T-A 12689462-T-A Y92227 YY++
15917176-T-C 13805296-T-C Y95133 YY++
16497054-CA-C 14385174-CA-C ++
16696844-A-T 14584964-A-T Y97054 YY**+
17491143-A-C 15379263-A-C Y99306 YY++
18413117-T-C 16301237-T-C Y101940 P6_Gap ++
18945935-G-A 16834055-G-A Y103124 YY++
14781240-G-A 12669310-G-A Y92178 YY++
21835321-G-C 19673435-G-C Y107630 Y++
13513153-A-C 11357477-A-C FGC41230 +
23761675-A-C 21599789-A-C FGC13662 F3530 Y*
22264650-A-C 20102764-A-C DYZ19 ****
23761675-A-AAGAAGAAGC 21599789-A-AAGAAGAAGC *
11675320-T-C **
10985916-C-CTCATG **
10984733-C-A **
10984721-C-A **
10984703-C-A **
10981037-A-C **
10975440-C-A **
10962898-C-CACTCA **
10959198-C-A **
10995263-C-A **
10958482-A-T **
11677402-G-T **
13870785-C-A 11750079-C-A **
10954220-C-A **
10952966-A-G **
10948461-C-T **
10943807-C-A **
10992277-A-C **
11662208-C-A **
11008572-T-A **
13512931-G-A 11357255-G-A **
11016421-C-CCTCTACACTG **
11016975-C-A **
11031334-T-A **
13280649-C-A 11124973-C-A **
13287940-T-C 11132264-T-C **
13301992-A-T 11146316-A-T **
13424210-C-A 11268534-C-A **
13502391-C-A 11346715-C-A **
13522104-A-T 11366428-A-T **
11658987-G-T **
13880004-A-T 11759298-A-T **
13565556-G-A 11409880-G-A **
13574667-C-A 11418991-C-A **
13577848-A-C 11422172-A-C **
13582798-T-G 11427122-T-G **
13583473-C-T 11427797-C-T **
13596487-C-G 11440811-C-G **
13596496-A-G 11440820-A-G **
13597463-C-A 11441787-C-A **
13561972-C-A 11406296-C-A **
32426-G-A **
13881432-C-A 11760726-C-A **
14715445-A-T 12603512-A-T **
14549295-G-A 12437496-G-A FT34410 **
14559281-C-A 12447482-C-A **
14622804-T-A 12511002-T-A **
14661001-T-C 12549066-T-C **
14670738-A-C 12558804-A-C **
14675073-G-T 12563139-G-T **
14678893-T-A 12566959-T-A **
14679004-A-C 12567070-A-C **
14688758-C-G 12576824-C-G Y91957 **
14727154-GT-G 12615222-GT-G **
14533261-G-A 12421462-G-A **
14756378-A-G 12644447-A-G **
14764912-T-C 12652981-T-C **
14765155-G-A 12653224-G-A **
14965161-C-A 12853236-C-A **
14990361-C-A 12878446-C-A **
14992702-G-A 12880787-G-A **
15011685-A-T 12899773-A-T **
15073297-G-A 12961387-G-A **
15127983-T-G 13016070-T-G **
15168291-A-G 13056377-A-G **
14538744-A-C 12426945-A-C **
14532163-T-C 12420364-T-C **
13888533-C-A 11767827-C-A **
14134659-C-G 12013953-C-G **
13893315-C-A 11772609-C-A **
13902914-G-A 11782208-G-A **
10933117-T-A **
13941685-C-G 11820979-C-G **
13949324-G-T 11828618-G-T **
13972102-C-A 11851396-C-A **
13986986-A-C 11866280-A-C **
14017190-T-C 11896484-T-C **
14017206-G-T 11896500-G-T **
14088986-A-T 11968280-A-T **
14159700-G-T 12038994-G-T **
14518397-G-A 12406598-G-A **
14180636-C-G 12059930-C-G **
14263403-G-T 12142697-G-T **
14269780-G-T 12149074-G-T **
14270738-C-A 12150032-C-A **
14383534-G-T 12262830-G-T **
14413068-G-T 12292365-G-T **
14462606-A-T 12341879-A-T **
14483360-G-T 12362629-G-T **
14512099-C-A 12400304-C-A **
14512217-A-G 12400422-A-G **
10933500-A-C **
10849136-C-A **
10914159-A-G **
8167150-A-C 8299109-A-C **
7314457-T-G 7446416-T-G **
7534607-G-A 7666566-G-A **
7621820-C-A 7753779-C-A **
7664718-T-C 7796677-T-C **
7723987-G-C 7855946-G-C **
7829536-C-A 7961495-C-A **
8073367-G-T 8205326-G-T **
8159562-T-A 8291521-T-A **
8167154-C-A 8299113-C-A **
7303144-C-A 7435103-C-A **
8167180-G-T 8299139-G-T **
8269985-T-A 8401944-T-A **
8732200-T-A 8864159-T-A **
8912841-C-A 9044800-C-A **
8912919-A-T 9044878-A-T **
8912926-T-C 9044885-T-C **
8912942-G-T 9044901-G-T **
9056681-A-G **
8976943-A-T 9139334-A-T **
7307956-C-A 7439915-C-A **
7296202-G-T 7428161-G-T **
9171206-G-A 9333597-G-A **
7076358-A-G 7208317-A-G **
6603332-C-T 6735291-C-T **
6694735-T-C 6826694-T-C **
6721968-G-T 6853927-G-T **
6771474-T-C 6903433-T-C **
6807997-A-T 6939956-A-T **
6916112-A-C 7048071-A-C **
6917204-G-T 7049163-G-T **
6977480-C-A 7109439-C-A **
7085453-A-T 7217412-A-T **
7253792-G-T 7385751-G-T **
7100253-C-A 7232212-C-A **
7107023-A-G 7238982-A-G **
7143302-G-A 7275261-G-A **
7156328-A-C 7288287-A-C **
7160893-A-C 7292852-A-C **
7160915-C-A 7292874-C-A **
7195221-C-A 7327180-C-A **
7201541-C-T 7333500-C-T **
7225555-G-T 7357514-G-T **
8982925-T-C 9145316-T-C **
9441294-T-A 9603685-T-A **
10914157-A-T **
15430038-A-AAAT 13318158-A-AAAT 8×AAT**
10789292-A-G **
10796304-G-T **
10823474-C-A **
10829206-T-C **
10841993-C-A **
10844037-C-A **
10847174-G-T **
10848785-T-C **
10849680-C-A **
10776675-T-A **
10858750-C-A **
10870471-C-A **
10874520-C-A **
10877969-C-T **
10878076-ACT-A **
10880466-C-A **
10890249-A-G **
10895946-C-G **
10898407-T-C **
10776692-C-G **
10775967-T-C **
9498551-T-G 9660942-T-G **
10657496-T-C **
9732916-TC-T 9895307-TC-T IR3_Prx **
9885351-T-A 10047742-T-A **
9890310-T-G 10052701-T-G **
9938539-A-C 10100930-A-C **
9939590-G-T 10101981-G-T **
9955626-C-A 10118017-C-A **
9975177-A-C 10137568-A-C **
9977387-C-A 10139778-C-A **
10051387-C-A 10213778-C-A **
10657647-C-A **
10775595-T-A **
10660144-T-A **
10666435-C-A **
10666662-T-C **
10673267-T-A **
10673288-T-A **
10673292-C-G **
10673307-T-A **
10690930-C-A **
10757430-C-A **
15201513-A-G 13089599-A-G **
16058850-CTG-C 13946970-CTG-C **
15477287-G-A 13365407-G-A **
22865302-C-A 20703416-C-A **
22235562-A-T 20073676-A-T DYZ19 **
22235569-T-A 20073683-T-A DYZ19 **
22235583-A-G 20073697-A-G DYZ19 **
22366257-A-C 20204371-A-C DYZ19 **
22587841-C-A 20425955-C-A **
22649419-C-A 20487533-C-A **
22660981-C-T 20499095-C-T **
22768123-T-G 20606237-T-G **
23004777-T-C 20842891-T-C **
22172814-T-G 20010928-T-G **
23019575-G-T 20857689-G-T **
23041261-A-G 20879375-A-G **
23052475-C-A 20890589-C-A **
23062357-C-T 20900471-C-T **
23092632-G-T 20930746-G-T **
23098772-G-C 20936886-G-C **
23206863-A-T 21044977-A-T **
23290274-T-G 21128388-T-G **
23340195-C-A 21178309-C-A **
22235550-C-T 20073664-C-T DYZ19 **
22172812-T-G 20010926-T-G **
23358735-C-T 21196849-C-T **
21268316-T-A 19106430-T-A **
20574853-T-C 18412967-T-C P5_Dst **
20692864-T-TG 18530978-T-TG P4_Prx **
20692877-A-C 18530991-A-C P4_Prx **
20692881-G-T 18530995-G-T P4_Prx **
20692885-C-A 18530999-C-A P4_Prx **
20692886-A-C 18531000-A-C P4_Prx **
20692890-C-T 18531004-C-T P4_Prx **
21248023-C-A 19086137-C-A **
21391584-C-G 19229698-C-G **
22164534-T-C 20002648-T-C **
21475045-G-T 19313159-G-T **
21488938-C-A 19327052-C-A **
21540688-G-T 19378802-G-T **
21584589-T-A 19422703-T-A **
21629570-C-A 19467684-C-A **
21848713-T-A 19686827-T-A **
21888749-A-G 19726863-A-G **
21939716-C-A 19777830-C-A **
21939873-G-T 19777987-G-T **
23341671-C-G 21179785-C-G **
23564694-G-T 21402808-G-T **
19758760-A-G 17646880-A-G P5_Prx **
28644486-C-A 26498339-C-A **
28515497-T-A 26369350-T-A **
28551812-G-T 26405665-G-T **
28570488-C-G 26424341-C-G **
28585608-A-G 26439461-A-G **
28591764-G-A 26445617-G-A **
28591765-A-C 26445618-A-C **
28591803-G-T 26445656-G-T **
28620812-C-T 26474665-C-T **
28700812-A-C 26554665-A-C **
28507332-TA-T 26361185-TA-T **
28754387-G-A 26608240-G-A **
28763187-C-A 26617040-C-A **
56749999-TCGA-T **
56844899-C-A **
56854635-A-G **
56861831-A-ACAAAC **
56871029-C-A **
56874948-T-C **
56880854-A-T **
28515474-C-T 26369327-C-T **
28467054-C-A 26320907-C-A **
23579332-G-T 21417446-G-T **
25819513-A-AG 23673366-A-AG P1_b3 **
23898705-C-A 21736819-C-A **
23898729-C-A 21736843-C-A **
24259769-G-C 22113622-G-C P3_b1 **
24389735-GTT-G 22243588-GTT-G 14×T**
24389955-T-A 22243808-T-A **
24389961-C-G 22243814-C-G **
24403278-G-T 22257131-G-T **
24403910-A-C 22257763-A-C **
24671183-C-G 22525036-C-G P3_b2 **
25954226-G-T 23808079-G-T P1_Y1 **
28332428-G-T 26186281-G-T P1_b4 **
25954344-T-G 23808197-T-G P1_Y1 **
25985432-T-TG 23839285-T-TG P1_Y1 **
25985443-G-T 23839296-G-T P1_Y1 **
27035110-C-T 24888963-C-T P1_r4 **
27035137-C-T 24888990-C-T P1_r4 **
27484492-TTGTGTG-T 25338345-TTGTGTG-T P1_Y2 14×TG**
27585940-A-G 25439793-A-G P1_Y2 **
27641460-C-A 25495313-C-A P1_Y2 **
27974345-T-TC 25828198-T-TC P1_Y2 **
20376683-C-A 18214797-C-A P5_Dst **
19758750-T-C 17646870-T-C P5_Prx **
15627128-G-T 13515248-G-T **
16860743-TC-T 14748863-TC-T **
16462533-A-T 14350653-A-T **
16503669-T-C 14391789-T-C **
16550957-C-A 14439077-C-A **
16573035-C-A 14461155-C-A **
16621864-A-G 14509984-A-G **
16665385-T-G 14553505-T-G **
16676708-T-A 14564828-T-A **
16710248-G-C 14598368-G-C **
16932084-C-A 14820204-C-A **
16450216-T-A 14338336-T-A Y96376 **
16974306-G-A 14862426-G-A **
17030856-A-G 14918976-A-G **
17061692-C-A 14949812-C-A **
17095398-A-G 14983518-A-G **
17103642-G-A 14991762-G-A **
17157574-T-A 15045694-T-A 10×A**
17181929-A-T 15070049-A-T **
17181937-T-G 15070057-T-G **
17181940-G-C 15070060-G-C **
16462522-T-C 14350642-T-C **
16423733-C-A 14311853-C-A **
17264979-G-T 15153099-G-T **
16020893-A-G 13909013-A-G **
15669842-C-A 13557962-C-A **
15683625-T-A 13571745-T-A **
15697001-A-T 13585121-A-T **
15730724-C-T 13618844-C-T **
15733572-G-C 13621692-G-C **
15733620-A-T 13621740-A-T **
15777150-A-G 13665270-A-G **
15943340-C-G 13831460-C-G **
15987919-C-A 13876039-C-A **
16023380-C-A 13911500-C-A **
16422120-C-G 14310240-C-G **
6505044-T-C 6637003-T-C **
16058924-C-A 13947044-C-A **
16094764-G-T 13982884-G-T **
16177073-C-G 14065193-C-G **
16351829-T-G 14239949-T-G **
16351830-A-C 14239950-A-C **
16351835-C-G 14239955-C-G **
16351913-A-G 14240033-A-G **
16356614-C-A 14244734-C-A **
17229396-T-A 15117516-T-A **
17317448-C-A 15205568-C-A **
19424063-G-T 17312183-G-T **
18730736-G-T 16618856-G-T **
18427775-C-A 16315895-C-A P6_Dst **
18541912-C-T 16430032-C-T **
18577919-G-C 16466039-G-C **
18577960-A-C 16466080-A-C **
18701778-T-G 16589898-T-G **
18707256-C-A 16595376-C-A **
18710377-C-A 16598497-C-A **
18710393-A-G 16598513-A-G **
18791630-A-G 16679750-A-G **
18291004-C-A 16179124-C-A P6_Prx **
18825652-G-A 16713772-G-A **
18849178-G-T 16737298-G-T **
18925314-TATTG-T 16813434-TATTG-T **
18988288-C-A 16876408-C-A **
18988342-A-C 16876462-A-C **
18988457-A-T 16876577-A-T **
19071856-A-G 16959976-A-G **
19073735-C-A 16961855-C-A **
19398214-A-G 17286334-A-G **
18355252-A-AG 16243372-A-AG P6_Prx **
18280258-A-T 16168378-A-T P6_Prx **
17440478-A-G 15328598-A-G **
17701528-TTTCTTGC-T 15589648-TTTCTTGC-T **
17449969-G-T 15338089-G-T **
17450143-C-T 15338263-C-T **
17453791-CT-C 15341911-CT-C 9×T**
17480077-T-G 15368197-T-G **
17501473-G-A 15389593-G-A FGC40316 **
17523988-T-G 15412108-T-G **
17538252-G-T 15426372-G-T **
17546068-G-T 15434188-G-T **
17600583-TA-T 15488703-TA-T **
17782553-T-A 15670673-T-A **
18218807-G-T 16106927-G-T **
17782559-G-C 15670679-G-C **
17886004-T-G 15774124-T-G **
17933719-C-A 15821839-C-A **
18013953-C-CAT 15902073-C-CAT P7_Dst **
18121739-A-C 16009859-A-C 8×T**
18159352-C-A 16047472-C-A **
18183764-C-T 16071884-C-T **
18185290-A-C 16073410-A-C **
18211658-A-G 16099778-A-G **
6587254-G-T 6719213-G-T **
6722009-A-T 6853968-A-T **
6492147-T-A 6624106-T-A **
11674351-G-A **
4388468-T-A 4520427-T-A **
21617737-C-A 19455851-C-A **
8172722-C-A 8304681-C-A **
10825353-G-T **
23098783-C-A 20936897-C-A **
5471846-C-A 5603805-C-A **
15622614-G-A 13510734-G-A **
11038169-C-A **
9088957-G-T 9251348-G-T **
10971856-G-T **
28612210-G-T 26466063-G-T **
14371454-C-A 12250750-C-A **
16860747-TGCA-T 14748867-TGCA-T **
6516822-C-A 6648781-C-A **
23198037-C-A 21036151-C-A **
13257498-C-A 11101822-C-A **
18194431-A-T 16082551-A-T **
9991162-C-A 10153553-C-A **
10900648-T-A **
18407033-C-A 16295153-C-A P6_Gap **
9732936-C-T 9895327-C-T IR3_Prx **
10958678-C-T **
26073060-G-GTT 23926913-G-GTT P1_Y1 **
14986539-C-A 12874607-C-A **
10766155-C-A **
16429660-G-T 14317780-G-T **
21425363-TA-T 19263477-TA-T **
23898727-C-A 21736841-C-A **
10983158-A-C **
19745037-C-G 17633157-C-G P5_Prx **
15683615-C-G 13571735-C-G **
3424099-C-A 3556058-C-A **
19271580-T-G 17159700-T-G **
16091296-C-A 13979416-C-A **
20252776-C-A 18090890-C-A P5_Dst **
26345795-C-A 24199648-C-A P1_Y1 **
7160892-A-C 7292851-A-C **
27808426-A-G 25662279-A-G P1_Y2 **
10874860-C-A **
17130038-C-A 15018158-C-A **
3075248-C-A 3207207-C-A **
2812883-G-T 2944842-G-T **
2853478-G-A 2985437-G-A **
2853485-G-T 2985444-G-T **
2947864-A-G 3079823-A-G **
3005547-C-A 3137506-C-A **
3033409-C-A 3165368-C-A **
3055620-C-A 3187579-C-A **
3078435-C-T 3210394-C-T **
16033547-C-A 13921667-C-A **
3170039-C-A 3301998-C-A **
3195406-G-T 3327365-G-T **
3232017-C-T 3363976-C-T **
3248401-G-T 3380360-G-T **
3262282-G-T 3394241-G-T **
3267322-T-G 3399281-T-G **
3340743-T-G 3472702-T-G **
3347649-C-A 3479608-C-A **
3500555-C-A 3632514-C-A **
9231778-C-A 9394169-C-A **
27266316-G-T 25120169-G-T P1_g3 **
6481366-A-G 6613325-A-G **
6096449-A-T 6228408-A-T **
28514763-C-A 26368616-C-A **
18194533-C-A 16082653-C-A **
15952707-C-A 13840827-C-A **
10982668-A-C **
16602696-C-A 14490816-C-A **
26201116-T-TG 24054969-T-TG P1_Y1 **
4661690-TA-T 4793649-TA-T 10×A**
14933554-A-T 12821619-A-T **
9351139-C-T 9513530-C-T **
5470326-C-A 5602285-C-A FGC5805 **
15180166-G-T 13068252-G-T **
15773959-C-A 13662079-C-A **
6236144-A-AC 6368103-A-AC IR3_Dst **
27585941-C-T 25439794-C-T P1_Y2 **
18905343-C-A 16793463-C-A **
13858361-A-G 11737655-A-G **
5926847-A-G 6058806-A-G FT18168 **
27872564-T-G 25726417-T-G P1_Y2 **
3396947-C-A 3528906-C-A **
4721267-C-A 4853226-C-A **
18196273-G-T 16084393-G-T **
21709158-A-AT 19547272-A-AT 10×T**
10768531-G-T **
21584110-G-T 19422224-G-T **
10777194-G-T FGC78762FGC78762 **
23807565-C-G 21645679-C-G **
14719599-T-A 12607667-T-A **
7109446-C-A 7241405-C-A **
27585950-G-T 25439803-G-T P1_Y2 **
14717602-G-T 12605670-G-T **
27872567-GAC-G 25726420-GAC-G P1_Y2 **
10652948-T-C **
7240932-C-A 7372891-C-A **
4357446-C-A 4489405-C-A **
28500806-C-CTT 26354659-C-CTT 18×T**
16164476-A-AC 14052596-A-AC P8_Dst **
10770692-C-T **
10766143-G-T **
22205030-C-A 20043144-C-A PF4219 ****
22167213-T-A 20005327-T-A **
22240959-C-CA 20079073-C-CA DYZ19 **
20533423-G-T 18371537-G-T P5_Dst **
9943801-A-C 10106192-A-C **
3655081-C-G 3787040-C-G **
6485707-ATG-A 6617666-ATG-A **
7195307-C-A 7327266-C-A 16×A**
7723993-A-T 7855952-A-T **
13222004-AG-A 11066328-AG-A **
27585952-A-C 25439805-A-C P1_Y2 **
19013820-G-A 16901940-G-A CTS9650 ****
16092736-T-C 13980856-T-C Z13099 **
18194381-C-G 16082501-C-G MF1370 **
59000777-T-G 56854630-T-G **
8333623-CCTACTT-C 8465582-CCTACTT-C **
21953535-CTTTT-C 19791649-CTTTT-C 15×T**
20796384-C-A 18634498-C-A P4_Prx **
24415718-TTATATATA-T 22269571-TTATATATA-T 31×TA**
17466766-C-A 15354886-C-A ****
24671177-T-G 22525030-T-G P3_b2 **
13941686-A-T 11820980-A-T **
11016419-C-G **
14765154-T-C 12653223-T-C **
10745924-A-C **
8403271-GC-G 8535230-GC-G **
20252746-T-A 18090860-T-A P5_Dst **
15285778-C-A 13173877-C-A **
14696980-C-A 12585046-C-A **
6580058-GTT-G 6712017-GTT-G 14×T**
19415636-C-A 17303756-C-A **
10974273-C-A **
6756900-C-G 6888859-C-G **
56763523-A-G **
27915185-A-AC 25769038-A-AC P1_Y2 **
22767465-C-A 20605579-C-A **
28581157-C-A 26435010-C-A **
19286368-C-A 17174488-C-A **
10815797-C-A **
16428023-G-T 14316143-G-T **
18086858-C-A 15974978-C-A **
18710320-A-G 16598440-A-G **
27808429-A-G 25662282-A-G P1_Y2 **
14933549-G-T 12821614-G-T **
10766127-C-T **
18186261-C-A 16074381-C-A **
25733078-G-T 23586931-G-T P1_b3 **
9732923-C-A 9895314-C-A IR3_Prx **
15671149-G-T 13559269-G-T **
2853475-A-C 2985434-A-C **
28714966-G-A 26568819-G-A **
19758800-T-TA 17646920-T-TA P5_Prx **
10766132-C-T **
15918465-C-A 13806585-C-A **
10766133-A-T **
10766142-T-C **
10766152-C-T **
11016429-T-C **
16071213-C-A 13959333-C-A **
6293383-G-T 6425342-G-T IR3_Dst **
7723976-G-A 7855935-G-A **
13963334-C-A 11842628-C-A **
3396505-C-G 3528464-C-G **
10661956-C-A **
3400733-C-A 3532692-C-A **
5081087-C-A 5213046-C-A **
4959942-T-C 5091901-T-C **
4976074-T-G 5108033-T-G **
3420164-C-A 3552123-C-A **
4999393-G-T 5131352-G-T **
5033661-A-G 5165620-A-G **
5040437-A-T 5172396-A-T **
5045904-G-T 5177863-G-T **
5101860-G-T 5233819-G-T **
4948333-T-C 5080292-T-C **
5121726-A-G 5253685-A-G **
5122075-G-T 5254034-G-T **
5125800-T-C 5257759-T-C **
5151035-T-C 5282994-T-C **
5186627-G-T 5318586-G-T **
5214126-C-A 5346085-C-A **
5222095-G-T 5354054-G-T **
5222341-C-T 5354300-C-T **
4959526-CT-C 5091485-CT-C **
4937007-C-A 5068966-C-A **
5287941-G-T 5419900-G-T **
4804711-G-A 4936670-G-A **
4679595-T-C 4811554-T-C **
4679636-C-T 4811595-C-T **
4679646-A-G 4811605-A-G **
4701306-T-G 4833265-T-G **
4705158-C-A 4837117-C-A **
4712494-T-A 4844453-T-A **
4729803-C-A 4861762-C-A **
4794508-A-G 4926467-A-G **
4805277-C-A 4937236-C-A **
4926165-A-T 5058124-A-T **
4805284-T-G 4937243-T-G **
4805320-A-T 4937279-A-T **
4805351-T-A 4937310-T-A **
4835931-C-G 4967890-C-G **
4888450-T-A 5020409-T-A **
4890181-A-T 5022140-A-T **
4898007-G-C 5029966-G-C **
4900387-T-C 5032346-T-C **
5287490-G-T 5419449-G-T **
5308278-C-A 5440237-C-A **
4635112-T-C 4767071-T-C **
6032453-A-G 6164412-A-G **
5926852-G-T 6058811-G-T **
5964196-T-G 6096155-T-G **
5969127-T-C 6101086-T-C **
6001945-C-A 6133904-C-A **
6018684-G-T 6150643-G-T **
6026194-G-T 6158153-G-T **
6026255-A-G 6158214-A-G **
6120281-A-G 6252240-A-G **
5871938-C-A 6003897-C-A **
6205614-C-G 6337573-C-G IR3_Dst **
6236192-T-C 6368151-T-C IR3_Dst **
6289168-T-C 6421127-T-C IR3_Dst **
6445000-G-C 6576959-G-C **
6457141-G-T 6589100-G-T **
6460832-C-A 6592791-C-A **
6471686-G-A 6603645-G-A **
6473205-A-T 6605164-A-T **
5888477-A-C 6020436-A-C **
5840586-G-T 5972545-G-T **
5376623-C-T 5508582-C-T **
5661251-C-A 5793210-C-A **
5415149-G-T 5547108-G-T **
5470663-G-T 5602622-G-T **
5507916-C-T 5639875-C-T **
5560042-G-A 5692001-G-A **
5597492-CCA-C 5729451-CCA-C **
5597516-T-C 5729475-T-C **
5605003-G-T 5736962-G-T **
5620104-G-A 5752063-G-A **
5682792-A-T 5814751-A-T **
5828079-G-T 5960038-G-T **
5682794-G-T 5814753-G-T **
5682798-A-T 5814757-A-T **
5682811-G-A 5814770-G-A 12×A**
5694298-C-A 5826257-C-A **
5743761-C-A 5875720-C-A **
5750459-A-T 5882418-A-T **
5763240-C-A 5895199-C-A **
5772998-A-G 5904957-A-G **
4679579-T-C 4811538-T-C **
4976099-CAA-C 5108058-CAA-C 16×A**
4598050-C-G 4730009-C-G **
3977653-C-T 4109612-C-T **
3656832-G-T 3788791-G-T **
3941512-C-T 4073471-C-T **
3656788-C-G 3788747-C-G **
3968974-A-G 4100933-A-G **
3969094-T-C 4101053-T-C **
3971363-G-C 4103322-G-C **
3996053-T-G 4128012-T-G **
3906168-G-T 4038127-G-T **
3629297-C-A 3761256-C-A **
3628037-C-G 3759996-C-G **
4076278-T-G 4208237-T-G **
4076282-A-G 4208241-A-G **
4083607-G-T 4215566-G-T **
3596964-G-T 3728923-G-T **
4083719-G-T 4215678-G-T **
3914116-TCA-T 4046075-TCA-T **
3900334-A-T 4032293-A-T **
3549999-G-T 3681958-G-T **
3821872-C-A 3953831-C-A **
3700316-T-G 3832275-T-G **
3684379-G-A 3816338-G-A **
3727236-C-A 3859195-C-A **
3656862-G-A 3788821-G-A **
3656839-G-T 3788798-G-T **
3792834-G-T 3924793-G-T **
3830928-T-C 3962887-T-C **
3900298-C-A 4032257-C-A **
3831636-G-T 3963595-G-T **
3833413-C-A 3965372-C-A **
3849245-C-A 3981204-C-A **
3858441-A-T 3990400-A-T **
4597970-A-T 4729929-A-T **
3862961-C-A 3994920-C-A **
3868488-GA-G 4000447-GA-G **
3550027-A-G 3681986-A-G **
4076256-C-A 4208215-C-A 21×A**
3700285-G-A 3832244-G-A **
4215436-A-T 4347395-A-T **
4417633-C-A 4549592-C-A **
4424250-G-A 4556209-G-A **
4439458-T-C 4571417-T-C **
4353938-C-A 4485897-C-A **
4340868-G-T 4472827-G-T **
4439825-C-A 4571784-C-A **
3507190-G-T 3639149-G-T **
3452133-A-G 3584092-A-G **
4461751-C-A 4593710-C-A **
3514703-G-T 3646662-G-T **
4373102-T-C 4505061-T-C **
4483637-G-T 4615596-G-T **
4189716-C-A 4321675-C-A **
4115131-C-A 4247090-C-A **
4129710-C-T 4261669-C-T **
4561556-A-G 4693515-A-G **
3528010-C-A 3659969-C-A **
4209319-T-G 4341278-T-G **
4509244-G-T 4641203-G-T **
14232971-TC-T 12112265-TC-T ***
56844320-G-A ***
22442591-TC-T 20280705-TC-T DYZ19 ***
13453084-TG-T 11297408-TG-T ***
10022156-T-C 10184547-T-C FGC19274 ***
22261722-G-A 20099836-G-A DYZ19 ***
22217231-T-A 20055345-T-A DYZ19 ***
13809913-A-T 11689207-A-T ***
13456400-T-C 11300724-T-C ***
13456420-C-A 11300744-C-A ***
13829586-G-A 11708880-G-A ***
9945223-A-AT 10107614-A-AT ***
13808515-A-C 11687809-A-C ***
13695704-T-C 11540028-T-C ***
13866159-G-A 11745453-G-A ***
13991772-CT-C 11871066-CT-C 10×T***
13832264-G-GGAATAAAAAC 11711558-G-GGAATAAAAAC ***
13814146-G-T 11693440-G-T ***
14425543-C-T 12304818-C-T ***
28580419-C-A 26434272-C-A ***
13678316-G-C 11522640-G-C ***
13456658-G-T 11300982-G-T ***
6731339-G-T 6863298-G-T ***
22451883-G-C 20289997-G-C DYZ19 ***
13844484-C-T 11723778-C-T ***
13475884-G-T 11320208-G-T ***
13585800-A-G 11430124-A-G ***
13851001-G-A 11730295-G-A ***
13859765-G-A 11739059-G-A ***
13832259-C-G 11711553-C-G ***
10018623-TACTG-T,TATTG 10181014-TACTG-T,TATTG ***
22312054-C-A 20150168-C-A DYZ19 ***
13507041-T-A 11351365-T-A ***
13885813-C-A 11765107-C-A ***
13507038-AGG-A 11351362-AGG-A ***
15604354-CAAAAAAA-C 13492474-CAAAAAAA-C 20×A***
13832298-C-G 11711592-C-G ***
28549917-C-A 26403770-C-A ***
13832302-A-G 11711596-A-G ***
13828665-CGAATG-C 11707959-CGAATG-C 4×GAATG***
10017375-G-T 10179766-G-T ***
4740758-C-A 4872717-C-A ***
25049552-C-T 22903405-C-T g1 ***
18191349-A-T 16079469-A-T ***
16929604-C-A 14817724-C-A FGC70263 ***
13485713-T-A 11330037-T-A ***
4999165-T-C 5131124-T-C ***
23997570-C-A 21851423-C-A ***
21146269-A-T 18984383-A-T ***
18567990-T-A 16456110-T-A ***
18539184-G-T 16427304-G-T ***
10661434-G-T ***
10986912-C-T ***
10974131-T-C ***
10693088-C-A ***
4241767-C-T 4373726-C-T ***
9944757-C-A 10107148-C-A ***
10918462-T-C ***
10918459-A-G ***
14473763-G-A 12353032-G-A ***
10801727-CATTCC-C,GATTCT ***
10808079-T-C ***
10821848-ACTCCG-A,AATCCA ***
10935548-AC-AT,T ***
10914515-G-C ***
7768780-C-A 7900739-C-A ***
17319880-GAAGAAAGAAAGAAAGA-G,GAAGA 15208000-GAAGAAAGAAAGAAAGA-G,GAAGA 16×AAGA***
10796228-GTTCCA-G ***
17264843-C-CTTATTATTA 15152963-C-CTTATTATTA 15×TTA***
15786564-G-T 13674684-G-T ***
14286816-G-A 12166110-G-A ***
23590742-G-A 21428856-G-A ***
16620339-C-A 14508459-C-A ***
11672498-G-A ***
10846061-C-A ***
10821952-T-C,G ***
22797913-A-T 20636027-A-T ***
11654380-A-G ***
11650531-C-T ***
7363441-C-T 7495400-C-T ***
14735126-G-T 12623194-G-T ***
8970841-T-A 9133232-T-A ***
14934306-CTTT-C,CTT 12822371-CTTT-C,CTT 15×T***
21579787-TA-T 19417901-TA-T ***
5409700-C-A 5541659-C-A ***
10846054-T-C ***
10625034-G-A ***
13208777-GA-G ***
21189676-A-AG 19027790-A-AG ***
10846048-G-T ***
13319573-C-A 11163897-C-A ***
10918457-T-C ***
15658215-GTATA-G 13546335-GTATA-G ***
9221697-A-ATATG 9384088-A-ATATG ***
9398095-T-C 9560486-T-C ***
20326037-GCA-T,TTT 18164151-GCA-T,TTT P5_Dst ***
19499034-G-A 17387154-G-A ***
10808085-C-A ***
13800613-T-G 11679907-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual13979841-G-A11859135-G-AYSEQ test positive

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B1775051088440479157568008938
Kit: B1775051005701781123237960784
Used in age calculations1088440481123238008938
Counts of SNPs1111
Variant counts last updated 2019-06-17 00:12:45.



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