Callaghan

FTDNA: B59960, BigY2: B59960, FGC: KA2ZZ

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z2959 > Z46375 > DF106 > DF104 > DF105 > A18726 > A259 > Y19870 > A5902

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
B59960		BigY2
B59960		FGC
KA2ZZ
13449858-A-G 11294182-A-G A*
20776675-A-G 18614789-A-G P4_Prx ***A*
6334539-T-A 6466498-T-A IR3_Dst ***A*
18551133-A-AT 16439253-A-AT 9×T++**
15992284-A-G 13880404-A-G FGC67685 YY+++
13848848-C-T 11728142-C-T FGC67683 +++
8697192-G-A 8829151-G-A FGC67682 YY+++
22460726-G-C 20298840-G-C FGC67687 DYZ19 ++*
22179331-A-G 20017445-A-G FGC67686 YY+++
7289475-C-T 7421434-C-T FGC67681 YY***
15963498-G-T 13851618-G-T FGC67684 Y***
10843363-A-C **
6830088-G-A 6962047-G-A **
6798818-C-A 6930777-C-A **
6790235-A-G 6922194-A-G **
6786701-C-A 6918660-C-A Y60964 **
6699019-TA-C 6830978-TA-C **
6654991-T-A 6786950-T-A **
6608316-A-C 6740275-A-C **
6608329-C-T 6740288-C-T **
6984027-C-A 7115986-C-A **
6608234-T-G 6740193-T-G **
6582804-A-T 6714763-A-T **
6580116-T-G 6712075-T-G **
6576534-T-C 6708493-T-C **
6492022-G-A 6623981-G-A **
6470776-G-A 6602735-G-A **
6918525-G-C 7050484-G-C **
7048593-A-T 7180552-A-T **
6992631-C-A 7124590-C-A **
7313468-T-G 7445427-T-G **
7475306-C-T 7607265-C-T IR1_L **
7475298-C-A 7607257-C-A IR1_L **
7450256-G-T 7582215-G-T IR1_L **
7362491-A-G 7494450-A-G **
7362425-C-A 7494384-C-A **
7320261-C-G 7452220-C-G **
7313412-G-A 7445371-G-A **
6414311-A-T 6546270-A-T **
7312627-A-T 7444586-A-T **
7235869-G-A 7367828-G-A **
7183803-A-C 7315762-A-C **
7169853-A-T 7301812-A-T **
7160946-T-A 7292905-T-A **
7132018-A-G 7263977-A-G **
7127399-T-C 7259358-T-C **
6454744-C-A 6586703-C-A **
6392536-T-A 6524495-T-A **
6405212-T-C 6537171-T-C **
5603753-A-T 5735712-A-T **
5753141-T-A 5885100-T-A **
5728237-C-A 5860196-C-A **
5698641-T-G 5830600-T-G **
5663436-C-A 5795395-C-A **
5645972-G-A 5777931-G-A **
5606149-A-G 5738108-A-G **
5593083-A-G 5725042-A-G **
5792966-A-T 5924925-A-T **
10843734-G-T **
10843750-C-G **
5587263-C-A 5719222-C-A **
10851193-C-T **
10851195-T-C **
5585102-C-A 5717061-C-A **
10861115-C-T **
5787339-A-T 5919298-A-T **
5817905-A-C 5949864-A-C **
7590737-A-C 7722696-A-C **
6028140-T-G 6160099-T-G **
6366486-A-C 6498445-A-C **
6366431-G-A 6498390-G-A **
6358402-A-C 6490361-A-C **
6358396-G-T 6490355-G-T **
6357975-C-G 6489934-C-G **
6310766-C-T 6442725-C-T IR3_Dst **
6267665-T-C 6399624-T-C IR3_Dst **
5996982-A-C 6128941-A-C **
5817928-A-G 5949887-A-G **
5981232-A-C 6113191-A-C **
5965450-G-A 6097409-G-A **
5867350-TC-T 5999309-TC-T **
5867265-C-A 5999224-C-A **
5859168-C-A 5991127-C-A **
5849310-C-A 5981269-C-A **
5817951-C-G 5949910-C-G **
7579623-A-G 7711582-A-G FTB79827 **
7645408-T-A 7777367-T-A **
7629954-C-T 7761913-C-T **
10693523-T-G **
10756221-C-T **
10756163-A-T FT429820 **
10756056-G-A **
10756044-C-A **
10755980-T-A **
10749032-A-G **
10687153-A-C **
10761828-T-C **
10686177-C-A **
10678451-C-A **
10668269-C-A **
10657163-T-C **
10656170-T-G **
10656094-C-G **
10656093-A-G **
10761824-C-G **
10762411-A-C **
10653669-C-A **
10809206-T-G **
10832633-T-G **
10831281-C-G **
10826945-A-G **
10820117-C-A **
10820044-C-A **
10815187-G-T **
10814632-C-A **
10806953-A-C **
10768318-C-T **
10806935-C-T **
10801940-C-A **
10801818-A-T **
10801220-A-T **
10796539-T-C **
10771069-C-A **
10768376-C-A **
10656063-C-A **
10651652-A-AC **
10843355-T-C **
7969529-C-T 8101488-C-T **
8525177-T-A 8657136-T-A **
8481103-AT-A 8613062-AT-A **
8481077-TA-T 8613036-TA-T **
8481074-A-AT 8613033-A-AT **
8314144-A-G 8446103-A-G **
8154168-G-T 8286127-G-T **
7969189-T-A 8101148-T-A **
8739131-C-G 8871090-C-G **
7923772-A-C 8055731-A-C **
7923738-T-C 8055697-T-C **
7873950-A-T 8005909-A-T **
10843726-A-AACTACATTCCT **
7861243-A-T 7993202-A-T **
7829040-G-T 7960999-G-T **
7656740-T-G 7788699-T-G **
8661314-C-T 8793273-C-T **
8739220-A-G 8871179-A-G **
10625708-C-A **
9514413-G-C 9676804-G-C **
10057020-A-C 10219411-A-C **
9942344-A-T 10104735-A-T **
9928315-T-C 10090706-T-C FT165025 **
9887915-T-A 10050306-T-A **
9832626-C-T 9995017-C-T **
9639052-G-T 9801443-G-T IR3_Prx **
9566728-A-G 9729119-A-G IR3_Prx **
9509716-C-A 9672107-C-A FT233986 **
8824079-C-A 8956038-C-A **
9472275-C-A 9634666-C-A **
9436953-C-A 9599344-C-A **
9211372-C-T 9373763-C-T **
9211362-C-G 9373753-C-G **
10843686-C-A **
8983721-G-C 9146112-G-C **
9113745-A-C **
7869121-A-T 8001080-A-T **
6267716-G-A 6399675-G-A IR3_Dst **
5534746-T-C 5666705-T-C **
18966217-C-A 16854337-C-A **
18201146-A-G 16089266-A-G **
27423950-T-A 25277803-T-A P1_g3 **
10814590-C-A **
25246609-A-T 23100462-A-T P2_r1 **
10889190-A-C **
15179003-T-A 13067089-T-A **
10889187-A-C **
18480352-A-C 16368472-A-C P6_Dst **
24013904-C-A 21867757-C-A **
18201127-G-A 16089247-G-A **
13578392-C-A 11422716-C-A FT445731 **
9183743-C-A 9346134-C-A **
11018268-C-A **
4416892-T-G 4548851-T-G **
28611452-C-A 26465305-C-A **
23825090-GA-G 21663204-GA-G **
2699426-G-C 2831385-G-C **
5727899-C-A 5859858-C-A **
3109320-A-G 3241279-A-G **
3366272-G-C 3498231-G-C **
3287247-C-A 3419206-C-A **
3285170-G-T 3417129-G-T **
3271681-G-T 3403640-G-T **
3271675-C-T 3403634-C-T **
3267347-G-A 3399306-G-A **
3241744-C-A 3373703-C-A **
3093191-T-A 3225150-T-A **
2773899-A-C 2905858-A-C **
3091735-C-A 3223694-C-A **
3032476-T-C 3164435-T-C **
2973059-G-T 3105018-G-T **
2948819-T-A 3080778-T-A **
2948800-A-T 3080759-A-T **
2860491-G-T 2992450-G-T **
2839979-C-A 2971938-C-A **
23848280-G-T 21686394-G-T **
4230247-C-A 4362206-C-A **
3463879-T-G 3595838-T-G **
6770773-G-T 6902732-G-T **
10969488-C-T **
4871743-C-A 5003702-C-A **
19592223-C-A 17480343-C-A P5_Prx **
3536395-G-T 3668354-G-T **
19304703-C-A 17192823-C-A **
20637669-C-T 18475783-C-T P4_Prx **
7269641-A-G 7401600-A-G **
6267674-T-C 6399633-T-C IR3_Dst **
11029376-G-C **
10865853-C-A **
13846728-T-A 11726022-T-A **
4081612-A-G 4213571-A-G **
4416886-T-G 4548845-T-G **
16545412-AC-A 14433532-AC-A **
6150064-C-T 6282023-C-T IR3_Dst **
4521611-C-A 4653570-C-A **
7269652-C-T 7401611-C-T **
15128121-C-CTT 13016208-C-CTT 18×T**
16421585-C-A 14309705-C-A **
28633565-C-A 26487418-C-A **
4521605-T-C 4653564-T-C **
10804749-T-A **
15406933-C-A 13295053-C-A **
21133482-G-C 18971596-G-C **
10980574-G-A **
23099854-C-A 20937968-C-A **
18890451-TCAA-T 16778571-TCAA-T 5×CAA**
2948150-C-A 3080109-C-A **
13642633-C-A 11486957-C-A **
10992260-C-G **
10812492-C-A **
28730088-C-A 26583941-C-A **
6816748-A-C 6948707-A-C **
10889215-A-T **
14639045-A-G 12527114-A-G **
21328846-A-T 19166960-A-T **
3368353-A-T 3500312-A-T **
3463881-T-G 3595840-T-G **
10862964-C-T **
5025473-C-A 5157432-C-A **
5186966-T-A 5318925-T-A **
5169863-T-A 5301822-T-A **
5069761-G-T 5201720-G-T **
5056547-G-T 5188506-G-T **
5035826-G-T 5167785-G-T **
5025579-G-C 5157538-G-C **
5025531-T-G 5157490-T-G **
4968902-T-G 5100861-T-G **
5186971-T-C 5318930-T-C **
4940720-G-A 5072679-G-A **
4929156-C-A 5061115-C-A **
4902253-C-G 5034212-C-G **
4882645-G-C 5014604-G-C **
4882530-G-A 5014489-G-A **
4862866-T-C 4994825-T-C **
4804245-T-A 4936204-T-A **
5186969-G-A 5318928-G-A **
5187002-T-A 5318961-T-A **
4679014-G-A 4810973-G-A **
5367154-C-A 5499113-C-A **
5524330-T-G 5656289-T-G **
5471943-AG-A 5603902-AG-A **
5471929-AAAGAAAGAAAG-A 5603888-AAAGAAAGAAAG-A **
5471793-C-A 5603752-C-A **
5420588-T-G 5552547-T-G **
5420481-T-C 5552440-T-C **
5376434-A-C 5508393-A-C **
5367069-G-A 5499028-G-A FT49265 **
5187024-A-C 5318983-A-C **
5238663-A-C 5370622-A-C **
5238455-A-G 5370414-A-G **
5238387-A-T 5370346-A-T **
5221041-G-T 5353000-G-T **
5221029-C-T 5352988-C-T **
5205369-C-A 5337328-C-A **
5200168-C-A 5332127-C-A **
4760676-G-T 4892635-G-T **
4638795-C-T 4770754-C-T **
3492781-A-T 3624740-A-T **
3697220-G-T 3829179-G-T **
3875977-C-T 4007936-C-T **
3848589-T-A 3980548-T-A **
3848301-C-T 3980260-C-T **
3835091-A-C 3967050-A-C **
3828969-G-C 3960928-G-C **
3820831-C-G 3952790-C-G **
3784682-T-A 3916641-T-A **
3697095-T-C 3829054-T-C **
4062268-C-A 4194227-C-A **
3667165-C-G 3799124-C-G **
3642700-C-A 3774659-C-A **
3555737-C-A 3687696-C-A **
3550815-G-T 3682774-G-T **
3550774-G-T 3682733-G-T **
3534923-A-C 3666882-A-C **
3492838-G-T 3624797-G-T **
3966802-A-G 4098761-A-G **
4063237-G-T 4195196-G-T **
4625737-A-T 4757696-A-T **
4270719-C-A 4402678-C-A **
4523831-A-C 4655790-A-C **
4423637-C-A 4555596-C-A **
4368794-G-T 4500753-G-T **
4357695-T-C 4489654-T-C **
4351536-T-G 4483495-T-G **
4302989-T-C 4434948-T-C FTA52141 **
4302979-T-C 4434938-T-C **
4225939-A-G 4357898-A-G **
4072679-T-A 4204638-T-A **
4133950-T-C 4265909-T-C **
4124113-A-G 4256072-A-G **
4120594-C-CA 4252553-C-CA **
4114877-G-C 4246836-G-C **
4109524-G-T 4241483-G-T **
4091814-C-T 4223773-C-T **
4081706-C-A 4213665-C-A **
10861895-AATTCC-A **
10866178-A-T **
10862969-CTGATT-C **
19592203-T-G 17480323-T-G P5_Prx **
19899581-G-A 17787701-G-A P5_Prx **
19705301-T-TA 17593421-T-TA P5_Prx **
19705244-C-A 17593364-C-A P5_Prx **
19644653-A-G 17532773-A-G P5_Prx **
19592338-T-TA 17480458-T-TA P5_Prx **
19592242-T-A 17480362-T-A P5_Prx **
19532796-C-A 17420916-C-A **
19899626-A-AAGGC 17787746-A-AAGGC P5_Prx **
19518723-T-G 17406843-T-G **
19486905-T-C 17375025-T-C **
19464528-T-G 17352648-T-G **
19245678-C-T 17133798-C-T **
19146601-G-C 17034721-G-C **
19137582-C-T 17025702-C-T **
19127687-CA-C 17015807-CA-C **
19899589-G-T 17787709-G-T P5_Prx **
19948109-T-A 17836229-T-A P5_Prx **
18791529-A-T 16679649-A-T **
20707615-A-G 18545729-A-G P4_Prx **
21367737-A-T 19205851-A-T **
21353276-C-G 19191390-C-G **
21353274-G-A 19191388-G-A **
21328837-TC-T 19166951-TC-T **
21241756-TA-T 19079870-TA-T **
20888629-G-A 18726743-G-A P4_Dst **
20854469-T-TG 18692583-T-TG P4_Dst **
20637673-T-A 18475787-T-A P4_Prx **
19948113-T-C 17836233-T-C P5_Prx **
20569557-G-T 18407671-G-T P5_Dst **
20493594-T-A 18331708-T-A P5_Dst **
20493554-A-C 18331668-A-C P5_Dst **
20354926-T-G 18193040-T-G P5_Dst **
19948131-C-CT 17836251-C-CT P5_Prx **
19948127-C-CAT 17836247-C-CAT P5_Prx **
19948117-T-TC 17836237-T-TC P5_Prx **
19107445-TA-T 16995565-TA-T **
18791431-T-C 16679551-T-C **
21583839-C-T 19421953-C-T **
16989100-A-C 14877220-A-C **
17244335-A-G 15132455-A-G **
17153332-T-A 15041452-T-A **
17125910-G-T 15014030-G-T **
17052984-C-A 14941104-C-A **
17020553-T-A 14908673-T-A **
17020552-A-C 14908672-A-C **
16941986-C-A 14830106-C-A **
17317780-G-A 15205900-G-A **
16709783-G-T 14597903-G-T **
16709782-T-G 14597902-T-G **
16709778-C-A 14597898-C-A **
16707101-C-A 14595221-C-A **
16417281-T-C 14305401-T-C **
16410241-C-A 14298361-C-A **
16354921-A-G 14243041-A-G **
17246494-T-C 15134614-T-C **
17382319-A-T 15270439-A-T **
18791340-T-A 16679460-T-A **
18201107-C-A 16089227-C-A **
18753060-G-C 16641180-G-C **
18753052-A-C 16641172-A-C **
18753011-C-T 16641131-C-T **
18624486-A-T 16512606-A-T **
18565059-CTCA-C 16453179-CTCA-C **
18518159-G-T 16406279-G-T P6_Dst **
18465446-A-G 16353566-A-G P6_Dst **
18196394-G-T 16084514-G-T **
17402472-TA-T 15290592-TA-T **
18185022-C-G 16073142-C-G **
18094167-A-G 15982287-A-G **
18094042-A-G 15982162-A-G **
17883950-A-C 15772070-A-C **
17576227-T-G 15464347-T-G **
17503974-G-T 15392094-G-T **
17426599-T-C 15314719-T-C **
21503288-T-C 19341402-T-C **
21584621-T-G 19422735-T-G **
16320387-T-G 14208507-T-G **
27232159-C-A 25086012-C-A P1_g3 **
28361372-T-A 26215225-T-A P1_gr2 **
28064066-A-G 25917919-A-G P1_Y2 **
27873594-G-T 25727447-G-T P1_Y2 **
27633620-G-A 25487473-G-A P1_Y2 **
27552538-C-A 25406391-C-A P1_Y2 **
27423964-C-A 25277817-C-A P1_g3 **
26477985-C-A 24331838-C-A P1_Y1 **
28429404-C-G 26283257-C-G P1_gr2 **
26139997-T-G 23993850-T-G P1_Y1 **
26098016-A-AAAAAG 23951869-A-AAAAAG P1_Y1 **
26041918-A-T 23895771-A-T P1_Y1 **
25995443-A-AAT 23849296-A-AAT P1_Y1 **
25934585-T-C 23788438-T-C P1_Y1 **
24751259-A-G 22605112-A-G P3_b2 **
24525867-A-AG 22379720-A-AG P3_t2 **
28361445-T-TA 26215298-T-TA P1_gr2 **
28480193-A-T 26334046-A-T **
24458769-A-AG 22312622-A-AG **
28706304-G-A 26560157-G-A **
56881340-A-T **
56848355-A-T **
56848333-G-C **
56845900-C-A **
56839066-C-A **
28758167-C-T 26612020-C-T **
28707815-G-T 26561668-G-T FT353961 **
28660669-T-A 26514522-T-A **
28486145-G-A 26339998-G-A **
28645099-A-T 26498952-A-T **
28611460-C-A 26465313-C-A **
28611450-A-T 26465303-A-T **
28581112-A-G 26434965-A-G **
28545334-T-G 26399187-T-G **
28521663-C-A 26375516-C-A **
28513798-C-A 26367651-C-A **
24512272-A-G 22366125-A-G BY204642 **
24406509-A-T 22260362-A-T **
21602805-G-T 19440919-G-T **
21969526-T-A 19807640-T-A **
22713813-C-A 20551927-C-A **
22713120-G-T 20551234-G-T **
22611307-A-G 20449421-A-G **
22210513-T-C 20048627-T-C **
22171511-C-T 20009625-C-T **
22146489-C-T 19984603-C-T **
22080673-G-T 19918787-G-T **
21963817-C-T 19801931-C-T **
22775048-G-A 20613162-G-A **
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7167159-T-A 7299118-T-A ***
7172242-C-T 7304201-C-T ALK120 ***
14077168-C-A 11956462-C-A ***
7270341-A-G 7402300-A-G ***
18019855-G-T 15907975-G-T ***
3274723-C-A 3406682-C-A ***
24654520-A-G 22508373-A-G P3_b2 ***
13460687-G-A 11305011-G-A ***
10063382-T-C 10225773-T-C FT427105 ***
10063382-TG-CA 10225773-TG-CA ***
6319373-G-A 6451332-G-A IR3_Dst ***
13196388-C-A 11040712-C-A ***
25054364-C-T 22908217-C-T g1 ***
25110099-G-A 22963952-G-A g1 ***
10063723-A-T 10226114-A-T ***
10063734-A-T 10226125-A-T ***
10063761-T-G 10226152-T-G ***
22267544-A-G 20105658-A-G DYZ19 ***
2730114-G-A 2862073-G-A ***
58989875-C-T 56843728-C-T ***
10063778-G-A 10226169-G-A ***
13132246-A-G 10621732-A-G FT427833 ***
10063762-G-C 10226153-G-C ***
16768530-T-A 14656650-T-A ***
13460578-T-A 11304902-T-A ***
27320941-A-AT 25174794-A-AT P1_g3 11×T***
22342356-A-T 20180470-A-T DYZ19 ***
15733965-T-C 13622085-T-C ***
2758718-C-A 2890677-C-A ***
22340041-G-A 20178155-G-A DYZ19 ***
10021449-C-T 10183840-C-T ***
13729554-C-G 11573878-C-G ***
22502126-T-G 20340240-T-G DYZ19 ***
58982012-GTGCCAC-ATGTCAA 56835865-GTGCCAC-ATGTCAA ***
10071073-C-A 10233464-C-A ***
10064129-T-G 10226520-T-G ***
22334409-A-C 20172523-A-C DYZ19 ***
13744885-C-T 11589209-C-T ***
13299976-A-C 11144300-A-C ***
7113261-G-T 7245220-G-T ***
10063473-T-C 10225864-T-C ***
10071114-G-A 10233505-G-A ***
26880327-A-T 24734180-A-T P1_r3 ***
59021583-ATAAT-GTAA 56875436-ATAAT-GTAA ***
9540282-G-T 9702673-G-T IR3_Prx ***
13744999-C-T 11589323-C-T ***
15047588-C-A 12935679-C-A ***
27016219-A-T 24870072-A-T P1_r4 ***
13855066-AGAG-GGAA 11734360-AGAG-GGAA ***
22364761-CT-TG 20202875-CT-TG DYZ19 ***
26880358-A-C 24734211-A-C P1_r3 ***
13846940-TAT-GAA 11726234-TAT-GAA ***
9369169-A-T 9531560-A-T ***
25446036-A-T 23299889-A-T P2_r2 ***
6403564-ATAT-GTAC 6535523-ATAT-GTAC ***
13846883-CGGAC-TGGAT 11726177-CGGAC-TGGAT ***
13859590-GAACAGATTCG-AAACGGACTC 11738884-GAACAGATTCG-AAACGGACTC ***
22234267-AAGAAAT-TAGTAAC 20072381-AAGAAAT-TAGTAAC DYZ19 ***
22431818-G-T 20269932-G-T DYZ19 ***
27527178-C-A 25381031-C-A P1_Y2 ***
22972997-T-C 20811111-T-C ***
26905497-CAA-C 24759350-CAA-C P1_r3 19×A***
58882865-C-T 56708006-G-A ***
56851618-T-C ***
28791280-A-G 26645133-A-G A4504 ***
25628466-G-T 23482319-G-T P1_b3 ***
56847053-C-T ***
13321117-G-A 11165441-G-A ***
56843522-C-A ***
28791259-C-A 26645112-C-A ***
22337965-A-C 20176079-A-C DYZ19 ***
58858773-A-T 56732098-T-A ***
13739635-A-T 11583959-A-T ***
58858775-T-C 56732096-A-G ***
24177697-T-TTG 22031550-T-TTG P3_b1 17×TG******
22277772-T-C 20115886-T-C ZS4707 DYZ19 ***
26992936-C-T 24846789-C-T P1_r4 ***
24711544-GT-G 22565397-GT-G P3_b2 11×T***
28008591-C-CA 25862444-C-CA P1_Y2 11×A***
58912635-G-C 56678236-C-G ***
22501937-A-C 20340051-A-C DYZ19 ***
13485890-CCCA-ACC 11330214-CCCA-ACC ***
13263371-CAGC-TAGG 11107695-CAGC-TAGG ***
13320070-A-T 11164394-A-T ***
22431801-T-A 20269915-T-A DYZ19 ***
22360196-C-A 20198310-C-A DYZ19 ***
13326039-G-A 11170363-G-A ***
27435279-AGT-A 25289132-AGT-A P1_g3 11×GT***
9952019-AT-A 10114410-AT-A ***
18831702-G-A 16719822-G-A ***
14429405-TTATATA-T 12308680-TTATA-T 15×TA***
20892284-C-A 18730398-C-A FGC14545 P4_Dst 9×A***
22309924-G-T 20148038-G-T DYZ19 ***
25323046-A-G 23176899-A-G P2_r1 ***
9944617-CTT-C 10107008-CTT-C ***
9944637-TG-T 10107028-TG-T ***
10071117-G-A 10233508-G-A ***
10063420-G-GT 10225811-G-GT ***
10063424-A-T 10225815-A-T ***
24595421-C-T 22449274-C-T P3_t2 ***
10685772-C-A ***
22431886-C-A 20270000-C-A DYZ19 ***
9218522-TTGTGTG-T,TTG 9380913-TTGTGTG-T,TTG 12×TG***
22277811-A-T 20115925-A-T DYZ19 ***
13481937-C-A 11326261-C-A ***
9920473-GC-TT 10082864-GC-TT ***
19546149-G-A 17434269-G-A ***
9324835-C-T 9487226-C-T ***
10068075-TGTTG-CGTTT 10230466-TGTTG-CGTTT ***
22340054-G-A 20178168-G-A JN96 DYZ19 ***
13718334-T-A 11562658-T-A ***
10037619-C-T 10200010-C-T A18565 ***
10037620-A-G 10200011-A-G ***
58841046-C-A 56749825-G-T ***
9944912-T-A 10107303-T-A ***
18855427-T-C 16743547-T-C ***
22277828-A-C 20115942-A-C DYZ19 ***
22277808-A-G 20115922-A-G DYZ19 ***
10014886-C-T 10177277-C-T ***
13132206-G-C 10621692-G-C ***
10042410-A-T 10204801-A-T ***
10063453-C-T 10225844-C-T FT258183 ***
10063823-G-A 10226214-G-A ***
10064070-G-T 10226461-G-T ***
10064115-T-A 10226506-T-A ***
10071193-C-A 10233584-C-A ***
10071223-T-C 10233614-T-C ***
10071252-G-A 10233643-G-A ***
10071278-T-C 10233669-T-C ***
10071295-A-C 10233686-A-C ***
14067620-TAC-T 11946914-TAC-T ***
21946458-T-C,G 19784572-T-C,G ***
13132226-G-C 10621712-G-C ***
22234403-G-A 20072517-G-A DYZ19 ***
19187495-C-T 17075615-C-T ***
22431808-T-C 20269922-T-C DYZ19 ***
13684447-T-A 11528771-T-A ***
22342344-C-A 20180458-C-A DYZ19 ***
9540266-A-G 9702657-A-G IR3_Prx ***
9577007-C-A 9739398-C-A IR3_Prx ***
13132235-G-A 10621721-G-A ***
25466379-T-A 23320232-T-A P2_r2 ***
58837619-C-T 56753252-G-A ***
58844561-C-A 56746310-G-T ***
22504082-CCAGT-GCAGA 20342196-CCAGT-GCAGA DYZ19 ***
22421191-G-A 20259305-G-A DYZ19 ***
10756129-C-T ***
25602263-T-A 23456116-T-A P1_gr1 ***
9398059-C-A 9560450-C-A ***
8398986-TG-T 8530945-TG-T ***
27262724-G-A 25116577-G-A P1_g3 ***
27186316-C-A 25040169-C-A P1_g3 ***
27154710-G-T 25008563-G-T P1_g3 ***
19594580-A-G 17482700-A-G P5_Prx ***
19620655-C-T 17508775-C-T P5_Prx ***
19647567-A-T 17535687-A-T P5_Prx ***
8550834-T-G 8682793-T-G ***
19700272-T-A 17588392-T-A P5_Prx ***
19773539-C-A 17661659-C-A P5_Prx ***
19860888-C-A 17749008-C-A P5_Prx ***
20142918-T-G 18031038-T-G P5_Dst ***
20384647-T-A 18222761-T-A P5_Dst ***
27337977-G-A 25191830-G-A P1_g3 ***
20732251-C-A 18570365-C-A P4_Prx ***
20744673-C-A 18582787-C-A P4_Prx ***
27127696-A-T 24981549-A-T P1_g3 ***
20931406-C-T 18769520-C-T P4_Dst ***
20947502-A-C 18785616-A-C P4_Dst ***
27016224-G-T 24870077-G-T P1_r4 ***
21170314-G-A 19008428-G-A ***
26991237-T-A 24845090-T-A P1_r4 ***
26990989-A-G 24844842-A-G P1_r4 ***
26990974-G-T 24844827-G-T P1_r4 ***
26990961-A-C 24844814-A-C P1_r4 ***
26948608-C-A 24802461-C-A P1_r3 ***
27289694-G-T 25143547-G-T P1_g3 ***
27714511-G-T 25568364-G-T P1_Y2 ***
26888460-A-T 24742313-A-T P1_r3 ***
17591815-A-G 15479935-A-G ***
10756119-T-TTTAAC ***
10756103-A-G ***
10756078-A-T ***
28804054-C-A 26657907-C-A ***
28791307-G-A 26645160-G-A ***
28791275-G-C 26645128-G-C ***
10755388-ACTCATCTCTGTTTCATTCCG-A,ACTCCTCTCTGTTCCATTCCG ***
10744381-G-C,T ***
4561176-TAACCTCGACCCAAATAATCTATAACA-T 4693135-TAACCTCGACCCAAATAATCTATAACA-T ***
10677750-AC-A ***
10676941-C-A ***
17629764-C-A 15517884-C-A ***
27841969-C-A 25695822-C-A P1_Y2 ***
28567393-G-T 26421246-G-T ***
17994782-G-T 15882902-G-T P7_Prx ***
28556329-G-T 26410182-G-T ***
9978958-C-A 10141349-C-A ***
28234302-A-T 26088155-A-T P1_b4 ***
4919329-G-T 5051288-G-T ***
28204106-A-T 26057959-A-T P1_b4 ***
18443075-A-T 16331195-A-T P6_Dst ***
27994928-A-G 25848781-A-G P1_Y2 ***
27916430-T-A 25770283-T-A P1_Y2 ***
18565029-T-A 16453149-T-A ***
27916422-C-A 25770275-C-A P1_Y2 ***
26906653-T-C 24760506-T-C P1_r3 ***
26887082-G-T 24740935-G-T P1_r3 ***
58891015-C-G 56699856-G-C ***
24028294-G-A 21882147-G-A ***
25699320-G-T 23553173-G-T P1_b3 ***
25677297-C-T 23531150-C-T P1_b3 ***
25651206-T-A 23505059-T-A P1_b3 ***
25628726-G-T 23482579-G-T P1_b3 ***
25626745-G-A 23480598-G-A P1_b3 ***
23682279-G-T 21520393-G-T ***
23810486-C-A 21648600-C-A ***
23831335-T-C 21669449-T-C ***
23879996-G-A 21718110-G-A ***
24013816-G-A 21867669-G-A ***
24013834-T-A 21867687-T-A ***
24038362-G-A 21892215-G-A ***
26105783-C-T 23959636-C-T P1_Y1 ***
24353293-T-A 22207146-T-A P3_t1 ***
24587621-C-A 22441474-C-A P3_t2 ***
24696149-A-G 22550002-A-G P3_b2 ***
25223790-A-C 23077643-A-C P2_r1 ***
25223947-G-A 23077800-G-A P2_r1 ***
25228196-G-T 23082049-G-T P2_r1 ***
25273912-A-T 23127765-A-T P2_r1 ***
25296562-A-T 23150415-A-T P2_r1 ***
25369409-A-T 23223262-A-T P2_r2 ***
25380279-T-G 23234132-T-G P2_r2 ***
25446052-C-T 23299905-C-T P2_r2 ***
25466404-T-G 23320257-T-G P2_r2 ***
26032791-C-A 23886644-C-A P1_Y1 ***
26219813-T-A 24073666-T-A P1_Y1 ***
26880435-G-C 24734288-G-C P1_r3 ***
22433116-T-A 20271230-T-A DYZ19 ***
26880374-A-T 24734227-A-T P1_r3 ***
26880365-G-T 24734218-G-T P1_r3 ***
26880363-A-C 24734216-A-C P1_r3 ***
26880361-A-T 24734214-A-T P1_r3 ***
22235316-C-A 20073430-C-A BY213616 DYZ19 ***
22301151-T-C 20139265-T-C DYZ19 ***
22327188-G-T 20165302-G-T DYZ19 ***
22334517-A-C 20172631-A-C DYZ19 ***
22334529-C-A 20172643-C-A DYZ19 ***
22421090-G-T 20259204-G-T DYZ19 ***
22421109-G-T 20259223-G-T DYZ19 ***
22421121-G-T 20259235-G-T DYZ19 ***
22481826-G-C 20319940-G-C DYZ19 ***
26308622-C-A 24162475-C-A P1_Y1 ***
7040196-G-T 7172155-G-T ***
7040029-G-T 7171988-G-T ***
22488858-T-G 20326972-T-G DYZ19 ***
22493065-G-C 20331179-G-C DYZ19 ***
22537329-C-A 20375443-C-A ***
26880343-A-T 24734196-A-T P1_r3 ***
26880267-G-T 24734120-G-T P1_r3 ***
26874719-G-A 24728572-G-A P1_r3 ***
26874067-C-A 24727920-C-A P1_r3 ***
26594387-A-C 24448240-A-C P1_g2 ***
26580614-G-T 24434467-G-T P1_g2 ***
26462979-T-C 24316832-T-C P1_Y1 ***
58891006-C-T 56699865-G-A ***
58908830-C-A 56682041-G-T ***
7466561-C-A 7598520-C-A IR1_L ***
13114746-T-A 10604232-T-A ***
10043794-T-A 10206185-T-A ***
10043821-T-C 10206212-T-C ***
10043846-G-A 10206237-G-A ***
10063458-G-T 10225849-G-T ***
10063719-T-C 10226110-T-C ***
10063752-G-C 10226143-G-C ***
10068058-G-T 10230449-G-T ***
10072036-T-C 10234427-T-C ***
10072073-T-C 10234464-T-C ***
10086268-C-A 10248659-C-A ***
10086355-C-T 10248746-C-T ***
13132244-C-T 10621730-C-T ***
10043237-T-C 10205628-T-C ***
11003677-C-A ***
13132248-G-A 10621734-G-A FT427834 ***
13132280-T-C 10621766-T-C ***
58970174-AA-T 56824027-AA-T ***
58908842-TCCCAT-CTCCAC 56682024-ATGGGA-GTGGAG ***
58883943-TATC-CATT 56706925-GATA-AATG ***
58862760-CG-AA 56728110-CG-TT ***
27095986-GTA-TTT 24949839-GTA-TTT P1_r4 ***
13433800-C-T 11278124-C-T ***
13446072-G-A 11290396-G-A ***
13460841-A-C 11305165-A-C ***
27016157-CC-TT 24870010-CC-TT P1_r4 ***
10043265-T-C 10205656-T-C FT178380 ***
10043063-C-T 10205454-C-T ***
13521512-A-C 11365836-A-C ***
9916257-T-A 10078648-T-A ***
7493850-A-T 7625809-A-T IR1_L ***
13454742-C-A 11299066-C-A ***
16406873-TG-T 14294993-TG-T ***
25592624-C-A 23446477-C-A P1_gr1 ***
9209009-G-T 9371400-G-T ***
9354950-A-G 9517341-A-G ***
9540270-T-C 9702661-T-C IR3_Prx ***
9540292-C-T 9702683-C-T IR3_Prx ***
9731848-C-G 9894239-C-G IR3_Prx ***
9916163-A-G 10078554-A-G ***
9916247-T-A 10078638-T-A ***
9916297-A-T 10078688-A-T ***
9947666-G-T 10110057-G-T ***
9920507-A-C 10082898-A-C ***
9920593-T-A 10082984-T-A ***
9924567-C-G 10086958-C-G ***
9924584-G-C 10086975-G-C ***
9924611-C-A 10087002-C-A ***
9931448-G-A 10093839-G-A ***
13487151-C-T 11331475-C-T FGC58454 ***
15279206-GTTT-G 13167305-GTTT-G 13×T***
9943740-G-C 10106131-G-C ***
9944900-G-T 10107291-G-T ***
9945452-T-C 10107843-T-C ***
9945458-A-G 10107849-A-G ***
13510078-T-C 11354402-T-C ***
26283209-CAA-C 24137062-CAA-C P1_Y1 21×A***
58908849-C-A 56682022-G-T ***
9916198-GT-AA 10078589-GT-AA ***
10037786-GGCTC-AGCTT 10200177-GGCTC-AGCTT ***
9930096-GG-AA 10092487-GG-AA ***
9924554-CAGAG-AAAAT 10086945-CAGAG-AAAAT ***
9924546-ACAC-TCAA 10086937-ACAC-TCAA ***
9920618-CC-GT 10083009-CC-GT ***
9920578-ACT-GCC 10082969-ACT-GCC ***
9920498-CTGTT-TTGTC 10082889-CTGTT-TTGTC ***
9916277-CTTT-C 10078668-CTTT-C ***
9916262-AAA-CAG 10078653-AAA-CAG ***
9916210-C-CTGAGATAGTT 10078601-C-CTGAGATAGTT ***
16015243-A-G 13903363-A-G ***
9474544-CA-C 9636935-CA-C ***
10063453-CGACAG-TGACT 10225844-CGACAG-TGACT ***
16104925-C-A 13993045-C-A P8_Prx ***
16136115-G-T 14024235-G-T P8_Dst ***
16136116-C-A 14024236-C-A P8_Dst ***
6780897-C-AA 6912856-C-AA ***
5059692-GACT-CACC 5191651-GACT-CACC ***
13705584-TA-AG 11549908-TA-AG ***
9923867-AT-GA 10086258-AT-GA ***
19693510-AT-A 17581630-AT-A P5_Prx 12×T***
21464556-G-AA 19302670-G-AA ***
10780664-C-G ***
58912617-C-A 56678254-G-T ***
58908862-T-C 56682009-A-G ***
10043209-AA-GG 10205600-AA-GG ***
10068056-AAG-TAT 10230447-AAG-TAT ***
13729758-T-A 11574082-T-A ***
21386171-TTA-T 19224285-TTA-T ***
13733676-T-G 11578000-T-G ***
13733686-T-A 11578010-T-A ***
13740321-T-G 11584645-T-G ***
13744989-T-C 11589313-T-C ***
13745001-G-A 11589325-G-A ***
2768043-TACAG-T 2900002-TACAG-T ***
25096454-A-AAAGC 22950307-A-AAAGC g1 ***
24325455-A-AT 22179308-A-AT P3_t1 11×T***
2845950-T-C 2977909-T-C ***
24013786-CATGG-TATGT 21867639-CATGG-TATGT ***
22504487-CGTT-AGTG 20342601-CGTT-AGTG DYZ19 ***
22324931-TCAT-GCAC 20163045-TCAT-GCAC DYZ19 ***
19948181-CCTTTCTTT-C 17836301-CCTTTCTTT-C P5_Prx 21×CTTT***
10072025-AGGA-GGGC 10234416-AGGA-GGGC ***
18325701-ATTTT-A 16213821-ATTTT-A P6_Prx 27×T***
17672318-GAAAAA-G 15560438-GAAAAA-G 16×A***
17663107-CAAG-AAAA 15551227-CAAG-AAAA ***
14391874-TAAAAAA-T 12271170-TAAAAAA-T 15×A***
13842646-C-CGGAATGGAAT 11721940-C-CGGAATGGAAT 12×GGAAT***
13809254-GAATAT-AAATGG 11688548-GAATAT-AAATGG ***
13737509-GATTG-AATTC 11581833-GATTG-AATTC ***
13461249-TATGT-AATGC 11305573-TATGT-AATGC ***
14785522-C-T 12673592-C-T ***
13460649-TCC-CCT 11304973-TCC-CCT ***
10086271-CCATA-ACATT 10248662-CCATA-ACATT ***
10072047-CCC-TCA 10234438-CCC-TCA ***
9166864-T-G 9329255-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B599601085252578854057971731
Kit: KA2ZZ*16000000100000008300000
Kit: B59960992567180567157923662
Used in age calculations16000000100000008300000
Counts of SNPs54
Variant counts last updated 2022-11-22 04:01:19.

* BED data not available. Using default values.

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