Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > ZZ40 > FGC23342 > FGC23344

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
3QRRX
13353698-CA-C 11198022-CA-C **
13351186-CAAAAAAAAA-C 11195510-CAAAAAAAAA-C 20×A**
13296184-GTTTT-G 11140508-GTTTT-G 14×T**
20815408-C-CATAT 18653522-C-CATAT P4_Gap 22×AT**
18008645-C-T 15896765-C-T P7_Dst 30×T**
13353708-A-G 11198032-A-G A3345 **
13274696-C-T 11119020-C-T **
13274673-T-TG 11118997-T-TG **
10101660-A-G 10264051-A-G **
20865354-C-CCACACA 18703468-C-CCACACA P4_Dst 18×CA**
13274598-T-C 11118922-T-C **
25089106-C-A 22942959-C-A g1 ***
24595178-C-T 22449031-C-T P3_t2 ***
24212104-G-A 22065957-G-A P3_b1 ***
24535679-A-T 22389532-A-T P3_t2 ***
25379162-A-T 23233015-A-T P2_r2 ***
24551410-A-G 22405263-A-G P3_t2 ***
25322767-A-G 23176620-A-G P2_r1 ***
24646658-C-G 22500511-C-G P3_b2 ***
25080829-A-C 22934682-A-C g1 ***
24646677-T-C 22500530-T-C P3_b2 ***
25273928-C-T 23127781-C-T P2_r1 ***
25273892-A-T 23127745-A-T P2_r1 ***
24668498-A-G 22522351-A-G P3_b2 ***
24931002-G-T 22784855-G-T g1 ***
25145461-T-G 22999314-T-G g1 ***
7106982-G-GCT 7238941-G-GCT 15×CT***
23227289-T-G 21065403-T-G ***
24174230-T-A 22028083-T-A P3_b1 ***
20366631-A-G 18204745-A-G P5_Dst ***
13194004-A-C 11038328-A-C ***
13353658-A-T 11197982-A-T ***
13747077-A-T 11591401-A-T ***
15491989-C-A 13380109-C-A ***
18297828-A-T 16185948-A-T P6_Prx ***
19006136-C-A 16894256-C-A A3443 21×A***
19515821-A-G 17403941-A-G A3883 ***
19721483-T-A 17609603-T-A P5_Prx ***
20470130-C-T 18308244-C-T P5_Dst ***
24111793-A-C 21965646-A-C P3_b1 ***
20510939-A-T 18349053-A-T P5_Dst ***
20574379-T-A 18412493-T-A P5_Dst ***
21347068-G-C 19185182-G-C ***
21840539-G-A 19678653-G-A ***
22263634-A-T 20101748-A-T DYZ19 ***
22366119-G-A 20204233-G-A DYZ19 ***
22367729-T-A 20205843-T-A DYZ19 ***
26056101-C-T 23909954-C-T P1_Y1 ***
26056053-G-C 23909906-G-C P1_Y1 ***
26500014-C-T 24353867-C-T P1_Y1 ***
26059997-C-A 23913850-C-A P1_Y1 ***
58904433-A-T 56686438-T-A ***
58851517-T-C 56739354-A-G ***
58851564-C-T 56739307-G-A ***
58861939-G-C 56728932-C-G ***
58861941-C-T 56728930-G-A ***
58861988-C-A 56728883-G-T ***
58870255-C-A 56720616-G-T ***
58885474-T-C 56705397-A-G ***
13278993-G-GAA 11123317-G-GAA ***
58839502-G-C 56751369-C-G ***
13728491-A-AATGGC 11572815-A-AATGGC ***
16344404-C-CTTCTTA 14232524-C-CTTCTTA ***
19412010-A-AAGAG 17300130-A-AAGAG ***
22367714-CCG-ACT 20205828-CCG-ACT DYZ19 ***
22367726-ATGT-GTGA 20205840-ATGT-GTGA DYZ19 ***
26056025-CTAT-GTAA 23909878-CTAT-GTAA P1_Y1 ***
26056061-GA-AC 23909914-GA-AC P1_Y1 ***
27641766-C-CTT 25495619-C-CTT P1_Y2 14×T***
58847826-A-T 56743045-T-A ***
58831608-A-T 56759263-T-A ***
26273407-A-C 24127260-A-C P1_Y1 ***
27317972-A-C 25171825-A-C P1_g3 ***
26415828-G-T 24269681-G-T P1_Y1 ***
26433169-T-G 24287022-T-G P1_Y1 ***
9325072-G-C 9487463-G-C ***
26507633-C-G 24361486-C-G P1_Y1 ***
27162014-T-A 25015867-T-A P1_g3 ***
27303277-A-G 25157130-A-G P1_g3 ***
27307411-G-A 25161264-G-A P1_g3 ***
27433031-T-C 25286884-T-C P1_g3 ***
58831603-G-T 56759268-C-A ***
27515660-G-C 25369513-G-C P1_Y2 ***
27693154-A-G 25547007-A-G P1_Y2 ***
27936123-T-A 25789976-T-A P1_Y2 ***
28063728-C-T 25917581-C-T P1_Y2 ***
28120605-C-T 25974458-C-T P1_b4 ***
28168547-A-G 26022400-A-G P1_b4 ***
28201351-T-C 26055204-T-C P1_b4 ***
28818241-C-A 26672094-C-A ***
9703145-C-T 9865536-C-T IR3_Prx ***
6210826-G-C 6342785-G-C IR3_Dst ***
9303203-A-C 9465594-A-C ***
24278260-A-G 22132113-A-G P3_b1 ***
13255809-TGGGGGG-T 11100133-TGGGGGG-T 12×G***
13277901-A-G 11122225-A-G ***
13286507-A-G 11130831-A-G Z8965 ***
13296715-A-G 11141039-A-G ***
58823348-A-AT 56767520-G-GA ***
23293594-GTGTGTA-G 21131708-GTGTGTA-G ***
28117202-A-T 25971055-A-T P1_b4 ***
10022237-T-A 10184628-T-A ***
22237241-G-C 20075355-G-C DYZ19 ***
22358779-G-A 20196893-G-A DYZ19 ***
26124507-G-A 23978360-G-A P1_Y1 ***
24646652-A-G 22500505-A-G P3_b2 ***
24646656-T-G 22500509-T-G P3_b2 ***
13296701-A-T 11141025-A-T ***
13353780-G-A 11198104-G-A ***
22237184-GAA-CAC 20075298-GAA-CAC DYZ19 ***
10022283-A-G 10184674-A-G ***
10020698-GTC-TTG 10183089-GTC-TTG ***
22237213-C-T 20075327-C-T DYZ19 ***
58824671-A-T 56766200-T-A ***
5689704-C-CATT 5821663-C-CATT 14×ATT***
27810250-A-AAG 25664103-A-AAG P1_Y2 ***
14101345-CCTTCTTCTT-C 11980639-CCTTCTTCTT-C 19×CTT***
13266695-CA-AC 11111019-CA-AC ***
19126436-C-CAAAAAAAAA 17014556-C-CAAAAAAAAA 25×A***
24535250-T-C 22389103-T-C P3_t2 ***
28237969-T-C 26091822-T-C P1_b4 ***
19610124-C-T 17498244-C-T P5_Prx 32×T***
13274792-T-C 11119116-T-C ***
22237184-G-C 20075298-G-C DYZ19 ***
9179397-A-C 9341788-A-C ***
9179421-C-G 9341812-C-G ***
13255184-A-G 11099508-A-G ***
19803584-T-C 17691704-T-C P5_Prx ***
22237119-G-T 20075233-G-T DYZ19 ***
22237142-A-C 20075256-A-C DYZ19 ***
22237149-A-G 20075263-A-G DYZ19 ***
22237161-C-T 20075275-C-T DYZ19 ***
10022311-T-G 10184702-T-G ***
58899798-G-C 56691073-C-G ***
7483009-C-T 7614968-C-T IR1_L ***
13276810-G-A 11121134-G-A ***
3822962-G-GATATATATAT 3954921-G-GATATATATAT 26×AT***
19609676-T-G 17497796-T-G P5_Prx ***
5905890-C-CA 6037849-C-CA 27×A***
10020707-T-C 10183098-T-C A3306 ***
10022202-A-C 10184593-A-C ***
10037991-ACT-GCCG 10200382-ACT-GCCG ***
58892669-C-T 56698202-G-A ***
13223004-A-G 11067328-A-G ***
7601010-TGTAA-T 7732969-TGTAA-T ***
26056168-T-G 23910021-T-G P1_Y1 ***
10022219-A-G 10184610-A-G ***
13747074-T-G 11591398-T-G ***
6167375-C-G 6299334-C-G IR3_Dst ***
26124489-G-A 23978342-G-A P1_Y1 ***
6210880-A-T 6342839-A-T IR3_Dst ***
6336138-G-T 6468097-G-T IR3_Dst ***
6387498-A-G 6519457-A-G ***
13291811-TG-CA 11136135-TG-CA ***
13535639-G-GTA 11379963-G-GTA 21×TA***
9191051-T-C 9353442-T-C ***
20510937-G-T 18349051-G-T P5_Dst ***
5936159-G-GATAT 6068118-G-GATAT 19×AT***
22366093-TG-AA 20204207-TG-AA DYZ19 ***
22358786-GT-TC 20196900-GT-TC DYZ19 ***
13291805-G-C 11136129-G-C ***
19488919-T-C 17377039-T-C ***
10038028-ACA-GCG 10200419-ACA-GCG ***
5308778-C-CTATA 5440737-C-CTATA 11×TA***
58908789-C-G 56682082-G-C ***
27837954-C-T 25691807-C-T P1_Y2 8×T***
3930563-GTATATA-G 4062522-GTATATA-G 21×TA***
58846333-CTCC-TTCA 56744535-GGAG-TGAA ***
26099827-G-C 23953680-G-C BY48322 P1_Y1 27×TC***
9782201-A-T 9944592-A-T FGC78614 ***
22237131-ATGAA-TTGAT 20075245-ATGAA-TTGAT DYZ19 ***
58849881-C-G 56740990-G-C ***
9830994-C-CA 9993385-C-CA ***
28628432-A-T 26482285-A-T ***
58853144-ATCCATTCGAT-A 56737704-TGAATCGAATG-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 3QRRX17641517103356118436606
Used in age calculations17641517103356118436606
Counts of SNPs21
Variant counts last updated 2019-08-08 22:13:52.



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