Givney
FTDNA: 544260, BigY2: 544260Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 544260 | BigY2 544260 |
---|---|---|---|---|---|---|---|---|---|
6212252-T-C | 6344211-T-C | IR3_Dst | *** | A* | |||||
13687855-T-C | 11532179-T-C | DYZ17 | A* | ||||||
22446268-G-A | 20284382-G-A | BY192874 | DYZ19 | *** | + | ||||
8674750-C-A | 8806709-C-A | Y | Y | + | ** | ||||
13617248-A-T | 11461572-A-T | BY86696 | ** | + | |||||
15048821-G-T | 12936912-G-T | BY99402 | Y | Y | + | + | |||
18204842-T-A | 16092962-T-A | BY120837 | Y | Y | + | + | |||
18566538-A-G | 16454658-A-G | Y102110 | Y | Y | + | + | |||
18637510-A-G | 16525630-A-G | BY122750 | Y | Y | + | + | |||
19144848-T-G | 17032968-T-G | BY126696 | Y | Y | + | + | |||
21389527-G-A | 19227641-G-A | BY132522 | Y | Y | + | + | |||
21395063-A-G | 19233177-A-G | BY132556 | Y | Y | + | + | |||
21916424-G-T | 19754538-G-T | BY136435 | Y | Y | + | + | |||
19170371-A-G | 17058491-A-G | Y | *** | * | |||||
10004846-C-A | 10167237-C-A | PF419 | ** | ||||||
15491889-C-A | 13380009-C-A | FTB19282 | 9×TA | ** | |||||
6753360-CA-C | 6885319-CA-C | ** | |||||||
58908890-C-T | 56681981-G-A | ** | |||||||
4583023-C-T | 4714982-C-T | ** | |||||||
6765639-GGT-G | 6897598-GGT-G | ** | |||||||
14473753-G-A | 12353022-G-A | ** | |||||||
17201756-A-T | 15089876-A-T | ** | |||||||
7087861-C-T | 7219820-C-T | ** | |||||||
13809185-A-C | 11688479-A-C | FT328418 | DYZ17 | ** | |||||
14372075-C-A | 12251371-C-A | ** | |||||||
21134906-C-T | 18973020-C-T | YP6169 | ** | ||||||
10019865-C-A | 10182256-C-A | ** | |||||||
2959998-T-A | 3091957-T-A | ** | |||||||
5241254-G-T | 5373213-G-T | ** | |||||||
20252786-C-A | 18090900-C-A | P5_Dst | ** | ||||||
28482917-T-G | 26336770-T-G | ** | |||||||
16271830-C-A | 14159950-C-A | ** | |||||||
13960976-C-A | 11840270-C-A | 14×A | ** | ||||||
19125684-G-A | 17013804-G-A | ** | |||||||
19507146-C-A | 17395266-C-A | ** | |||||||
8216430-A-G | 8348389-A-G | ** | |||||||
22783177-G-A | 20621291-G-A | ** | |||||||
21713458-T-C | 19551572-T-C | ** | |||||||
14176420-G-T | 12055714-G-T | ** | |||||||
4521603-C-A | 4653562-C-A | ** | |||||||
10750663-T-A | ** | ||||||||
10750667-C-A | ** | ||||||||
10750671-T-G | ** | ||||||||
10750684-T-C | ** | ||||||||
10955503-A-AT | ** | ||||||||
10846660-C-A | ** | ||||||||
10846668-T-G | ** | ||||||||
10846673-C-G | ** | ||||||||
14933559-A-T | 12821624-A-T | ** | |||||||
15769037-C-A | 13657157-C-A | ** | |||||||
14077144-C-A | 11956438-C-A | ** | |||||||
25990666-C-T | 23844519-C-T | P1_Y1 | ** | ||||||
8230611-TA-T | 8362570-TA-T | 8×A | ** | ||||||
16855363-T-A | 14743483-T-A | ** | |||||||
7922592-G-T | 8054551-G-T | ** | |||||||
23476320-C-A | 21314434-C-A | ** | |||||||
5853507-G-T | 5985466-G-T | ** | |||||||
20603882-A-G | 18441996-A-G | P5_Dst | ** | ||||||
4485733-G-A | 4617692-G-A | ** | |||||||
24523593-CAAA-C | 22377446-CAAA-C | 13×A | ** | ||||||
10780429-G-T | ** | ||||||||
13259058-C-A | 11103382-C-A | ** | |||||||
11027051-C-T | ** | ||||||||
5842220-C-A | 5974179-C-A | ** | |||||||
10899865-G-T | ** | ||||||||
9602672-T-G | 9765063-T-G | IR3_Prx | ** | ||||||
18307719-A-AT | 16195839-A-AT | P6_Prx | ** | ||||||
19125693-T-C | 17013813-T-C | ** | |||||||
14784737-A-T | 12672807-A-T | ** | |||||||
18628150-C-A | 16516270-C-A | ** | |||||||
21224927-C-T | 19063041-C-T | ** | |||||||
10827078-G-T | ** | ||||||||
21482782-G-TTT | 19320896-G-TTT | ** | |||||||
11009756-G-T | ** | ||||||||
19187420-C-T | 17075540-C-T | ** | |||||||
10955494-TCTACTC-T | ** | ||||||||
6916357-C-A | 7048316-C-A | ** | |||||||
17567357-C-A | 15455477-C-A | ** | |||||||
6831329-C-A | 6963288-C-A | ** | |||||||
10821856-CAAT-C | ** | ||||||||
11035987-A-G | ** | ||||||||
11035990-A-C | ** | ||||||||
11035999-CTTCTT-C | ** | ||||||||
11036015-C-A | ** | ||||||||
11036032-CTATATTCCTT-C | ** | ||||||||
23127414-CAAA-C | 20965528-CAAA-C | 24×A | ** | ||||||
14073977-C-A | 11953271-C-A | ** | |||||||
23476305-T-TA | 21314419-T-TA | 10×A | ** | ||||||
56847139-TC-T | ** | ||||||||
5560254-C-A | 5692213-C-A | ** | |||||||
11027043-C-A | ** | ||||||||
13462326-C-T | 11306650-C-T | ** | |||||||
3696373-C-A | 3828332-C-A | ** | |||||||
23790347-A-C | 21628461-A-C | ** | |||||||
11034861-TGAC-T | ** | ||||||||
11034887-C-A | ** | ||||||||
16783412-TAAA-T | 14671532-TAAA-T | 13×A | ** | ||||||
3158927-C-A | 3290886-C-A | ** | |||||||
15146400-C-A | 13034487-C-A | ** | |||||||
11012257-G-A | FT393643 | ** | |||||||
15733877-C-A | 13621997-C-A | ** | |||||||
4929207-G-A | 5061166-G-A | ** | |||||||
10673725-C-A | ** | ||||||||
10986591-G-T | ** | ||||||||
28780319-T-A | 26634172-T-A | Y130167 | ** | ||||||
21839987-C-T | 19678101-C-T | ** | |||||||
22093144-A-T | 19931258-A-T | ** | |||||||
22093156-G-T | 19931270-G-T | ** | |||||||
22774889-TTC-T | 20613003-TTC-T | ** | |||||||
27398508-CTCA-C | 25252361-CTCA-C | P1_g3 | ** | ||||||
10964319-C-A | ** | ||||||||
13268790-G-T | 11113114-G-T | ** | |||||||
15530222-C-A | 13418342-C-A | ** | |||||||
7864367-C-A | 7996326-C-A | ** | |||||||
15068888-G-C | 12956979-G-C | ** | |||||||
15061728-G-T | 12949820-G-T | ** | |||||||
21211965-C-A | 19050079-C-A | ** | |||||||
8376391-C-A | 8508350-C-A | ** | |||||||
22783187-T-A | 20621301-T-A | ** | |||||||
23625628-T-C | 21463742-T-C | ** | |||||||
10678598-C-A | ** | ||||||||
10986400-A-T | ** | ||||||||
5785878-C-A | 5917837-C-A | ** | |||||||
8314178-A-G | 8446137-A-G | ** | |||||||
3834680-C-A | 3966639-C-A | ** | |||||||
20603901-A-G | 18442015-A-G | P5_Dst | ** | ||||||
9014283-C-A | 9176674-C-A | ** | |||||||
7105005-A-T | 7236964-A-T | ** | |||||||
9316747-C-A | 9479138-C-A | ** | |||||||
9700762-C-A | 9863153-C-A | IR3_Prx | ** | ||||||
10879305-G-T | ** | ||||||||
11002052-C-G | ** | ||||||||
11002060-C-T | ** | ||||||||
20751882-T-TC | 18589996-T-TC | P4_Prx | ** | ||||||
14701340-C-A | 12589406-C-A | ** | |||||||
18926911-T-A | 16815031-T-A | ** | |||||||
10654133-G-C | ** | ||||||||
7829594-C-A | 7961553-C-A | ** | |||||||
14184373-C-A | 12063667-C-A | ** | |||||||
21224970-C-T | 19063084-C-T | ** | |||||||
10943763-G-T | ** | ||||||||
2652036-G-A | 2783995-G-A | ** | |||||||
2693256-C-A | 2825215-C-A | ** | |||||||
2708288-T-A | 2840247-T-A | ** | |||||||
2876866-A-G | 3008825-A-G | ** | |||||||
2885818-C-A | 3017777-C-A | ** | |||||||
2903396-C-A | 3035355-C-A | ** | |||||||
3151889-T-C | 3283848-T-C | ** | |||||||
3158918-A-G | 3290877-A-G | ** | |||||||
3248844-C-A | 3380803-C-A | ** | |||||||
3471062-G-T | 3603021-G-T | ** | |||||||
3550570-AAC-A | 3682529-AAC-A | ** | |||||||
3591619-A-G | 3723578-A-G | ** | |||||||
3660129-A-G | 3792088-A-G | ** | |||||||
3712126-C-A | 3844085-C-A | ** | |||||||
3728054-C-A | 3860013-C-A | ** | |||||||
3900938-G-T | 4032897-G-T | ** | |||||||
4144111-G-T | 4276070-G-T | ** | |||||||
4243620-A-G | 4375579-A-G | ** | |||||||
4302545-A-C | 4434504-A-C | ** | |||||||
4361289-T-A | 4493248-T-A | ** | |||||||
4473047-C-G | 4605006-C-G | ** | |||||||
4537415-A-T | 4669374-A-T | ** | |||||||
4537871-G-A | 4669830-G-A | ** | |||||||
4542566-C-A | 4674525-C-A | ** | |||||||
4583015-A-C | 4714974-A-C | ** | |||||||
4752990-G-T | 4884949-G-T | ** | |||||||
4952098-T-A | 5084057-T-A | ** | |||||||
4952109-C-A | 5084068-C-A | ** | |||||||
4958306-C-T | 5090265-C-T | ** | |||||||
4959863-C-A | 5091822-C-A | ** | |||||||
4970045-G-T | 5102004-G-T | ** | |||||||
5073579-C-A | 5205538-C-A | ** | |||||||
5191321-C-T | 5323280-C-T | ** | |||||||
5220495-T-C | 5352454-T-C | ** | |||||||
5220537-T-G | 5352496-T-G | ** | |||||||
5221122-C-A | 5353081-C-A | ** | |||||||
5232589-C-A | 5364548-C-A | ** | |||||||
5241261-A-G | 5373220-A-G | ** | |||||||
5243394-C-A | 5375353-C-A | ** | |||||||
5264216-A-G | 5396175-A-G | ** | |||||||
5271821-A-G | 5403780-A-G | ** | |||||||
5292709-C-G | 5424668-C-G | ** | |||||||
5320785-C-A | 5452744-C-A | ** | |||||||
5335897-A-C | 5467856-A-C | ** | |||||||
5421021-G-A | 5552980-G-A | ** | |||||||
5495418-A-G | 5627377-A-G | ** | |||||||
5495580-T-C | 5627539-T-C | ** | |||||||
5586042-T-A | 5718001-T-A | ** | |||||||
5600942-C-A | 5732901-C-A | ** | |||||||
5645050-C-T | 5777009-C-T | ** | |||||||
5645104-C-T | 5777063-C-T | FTB20116 | ** | ||||||
5822836-G-T | 5954795-G-T | ** | |||||||
5858538-A-C | 5990497-A-C | ** | |||||||
5859003-C-T | 5990962-C-T | ** | |||||||
5859037-C-T | 5990996-C-T | ** | |||||||
5890760-A-T | 6022719-A-T | ** | |||||||
5927049-G-T | 6059008-G-T | ** | |||||||
5966047-A-C | 6098006-A-C | ** | |||||||
6091977-G-T | 6223936-G-T | ** | |||||||
6149682-T-C | 6281641-T-C | IR3_Dst | ** | ||||||
6352016-A-C | 6483975-A-C | ** | |||||||
6357797-C-T | 6489756-C-T | ** | |||||||
6457861-G-A | 6589820-G-A | FGC72361 | ** | ||||||
6462436-G-A | 6594395-G-A | ** | |||||||
6467390-TCC-T | 6599349-TCC-T | ** | |||||||
6467414-G-T | 6599373-G-T | ** | |||||||
6576593-G-T | 6708552-G-T | ** | |||||||
6576627-A-T | 6708586-A-T | ** | |||||||
6621480-G-T | 6753439-G-T | ** | |||||||
6634223-G-C | 6766182-G-C | ** | |||||||
6651363-C-A | 6783322-C-A | ** | |||||||
6697278-C-A | 6829237-C-A | ** | |||||||
6715142-C-A | 6847101-C-A | ** | |||||||
6730180-AT-A | 6862139-AT-A | ** | |||||||
6753366-A-T | 6885325-A-T | ** | |||||||
6753368-TA-T | 6885327-TA-T | ** | |||||||
6878865-A-G | 7010824-A-G | ** | |||||||
6919907-G-T | 7051866-G-T | ** | |||||||
6998027-G-C | 7129986-G-C | ** | |||||||
7030007-A-C | 7161966-A-C | ** | |||||||
7052397-C-A | 7184356-C-A | ** | |||||||
7080944-A-T | 7212903-A-T | ** | |||||||
7085194-C-A | 7217153-C-A | ** | |||||||
7105007-T-C | 7236966-T-C | ** | |||||||
7105009-T-A | 7236968-T-A | ** | |||||||
7105013-AG-A | 7236972-AG-A | ** | |||||||
7105021-T-G | 7236980-T-G | ** | |||||||
7105034-T-C | 7236993-T-C | ** | |||||||
7105035-G-A | 7236994-G-A | ** | |||||||
7105039-C-T | 7236998-C-T | ** | |||||||
7105045-T-G | 7237004-T-G | ** | |||||||
7123463-C-T | 7255422-C-T | FT99127 | ** | ||||||
7157141-T-A | 7289100-T-A | ** | |||||||
7184902-C-A | 7316861-C-A | ** | |||||||
7196299-C-A | 7328258-C-A | ** | |||||||
7214542-C-A | 7346501-C-A | ** | |||||||
7235081-A-C | 7367040-A-C | ** | |||||||
7239322-A-G | 7371281-A-G | ** | |||||||
7239723-C-A | 7371682-C-A | ** | |||||||
7248647-T-A | 7380606-T-A | ** | |||||||
7253280-G-A | 7385239-G-A | ** | |||||||
7287857-T-C | 7419816-T-C | ** | |||||||
7311053-C-A | 7443012-C-A | ** | |||||||
7331368-T-G | 7463327-T-G | ** | |||||||
7335597-C-A | 7467556-C-A | ** | |||||||
7358331-C-A | 7490290-C-A | ** | |||||||
7377680-C-G | 7509639-C-G | ** | |||||||
7389382-T-C | 7521341-T-C | ** | |||||||
7431634-C-A | 7563593-C-A | ** | |||||||
7432469-C-A | 7564428-C-A | ** | |||||||
7471036-A-T | 7602995-A-T | IR1_L | ** | ||||||
7582091-A-G | 7714050-A-G | ** | |||||||
7645117-G-T | 7777076-G-T | ** | |||||||
7664706-G-GT | 7796665-G-GT | ** | |||||||
7695799-C-A | 7827758-C-A | ** | |||||||
7695808-T-G | 7827767-T-G | ** | |||||||
7704729-C-G | 7836688-C-G | ** | |||||||
7735094-C-A | 7867053-C-A | ** | |||||||
7986648-C-T | 8118607-C-T | ** | |||||||
8001994-C-A | 8133953-C-A | ** | |||||||
8043106-G-C | 8175065-G-C | ** | |||||||
8078624-G-T | 8210583-G-T | ** | |||||||
8140318-G-T | 8272277-G-T | ** | |||||||
8217928-C-A | 8349887-C-A | ** | |||||||
8314170-TG-T | 8446129-TG-T | ** | |||||||
8314180-T-G | 8446139-T-G | ** | |||||||
8321578-C-G | 8453537-C-G | ** | |||||||
8351543-G-A | 8483502-G-A | ** | |||||||
8568505-G-T | 8700464-G-T | ** | |||||||
8706024-T-A | 8837983-T-A | ** | |||||||
8710103-C-A | 8842062-C-A | ** | |||||||
8736282-C-A | 8868241-C-A | ** | |||||||
8776546-G-A | 8908505-G-A | ** | |||||||
8799600-T-C | 8931559-T-C | ** | |||||||
8842432-C-A | 8974391-C-A | ** | |||||||
8849671-C-A | 8981630-C-A | ** | |||||||
8856282-G-T | 8988241-G-T | ** | |||||||
8900959-A-T | 9032918-A-T | ** | |||||||
8981580-A-C | 9143971-A-C | ** | |||||||
9094574-C-G | 9256965-C-G | ** | |||||||
9116920-G-T | 9279311-G-T | ** | |||||||
9316738-T-G | 9479129-T-G | ** | |||||||
9316744-G-A | 9479135-G-A | ** | |||||||
9316748-AAG-A | 9479139-AAG-A | ** | |||||||
9354171-C-A | 9516562-C-A | ** | |||||||
9453933-T-C | 9616324-T-C | ** | |||||||
9465274-C-A | 9627665-C-A | ** | |||||||
9522562-C-A | 9684953-C-A | ** | |||||||
9577120-T-C | 9739511-T-C | IR3_Prx | ** | ||||||
9602683-A-T | 9765074-A-T | IR3_Prx | ** | ||||||
9700764-G-A | 9863155-G-A | IR3_Prx | ** | ||||||
9700775-C-A | 9863166-C-A | IR3_Prx | ** | ||||||
9751461-AAAAAAATC-A | 9913852-AAAAAAATC-A | ** | |||||||
9855928-C-A | 10018319-C-A | ** | |||||||
9885050-T-A | 10047441-T-A | ** | |||||||
9887039-T-G | 10049430-T-G | ** | |||||||
9926821-C-A | 10089212-C-A | ** | |||||||
9938293-T-C | 10100684-T-C | ** | |||||||
9940531-C-A | 10102922-C-A | ** | |||||||
10018055-A-C | 10180446-A-C | ** | |||||||
10661330-C-CCCATT | ** | ||||||||
10671898-A-G | ** | ||||||||
10677939-C-T | ** | ||||||||
10688118-C-A | ** | ||||||||
10690165-T-G | ** | ||||||||
10744409-C-T | ** | ||||||||
10744430-A-C | ** | ||||||||
10750512-C-A | ** | ||||||||
10750575-C-A | ** | ||||||||
10764912-A-T | ** | ||||||||
10765646-G-T | ** | ||||||||
10781762-G-T | ** | ||||||||
10787158-C-A | ** | ||||||||
10799545-C-T | ** | ||||||||
10802157-A-C | ** | ||||||||
10814841-T-A | ** | ||||||||
10814854-C-A | ** | ||||||||
10814855-T-A | ** | ||||||||
10814859-A-T | ** | ||||||||
10814872-TC-T | ** | ||||||||
10814875-ACTTC-A | ** | ||||||||
10816351-C-A | ** | ||||||||
10835368-T-G | ** | ||||||||
10835375-C-A | ** | ||||||||
10836627-T-C | ** | ||||||||
10844749-A-C | ** | ||||||||
10847883-G-C | ** | ||||||||
10850303-T-A | ** | ||||||||
10860816-C-A | ** | ||||||||
10869993-A-G | ** | ||||||||
10873162-C-A | ** | ||||||||
10879328-C-A | ** | ||||||||
10885325-C-A | ** | ||||||||
10914290-T-C | ** | ||||||||
10932589-C-T | ** | ||||||||
10932612-T-A | ** | ||||||||
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23311371-A-C | 21149485-A-C | ** | |||||||
23345712-T-C | 21183826-T-C | ** | |||||||
23411300-A-G | 21249414-A-G | ** | |||||||
23411404-T-C | 21249518-T-C | ** | |||||||
23433527-G-T | 21271641-G-T | ** | |||||||
23441239-C-T | 21279353-C-T | ** | |||||||
23790211-A-G | 21628325-A-G | ** | |||||||
23790246-T-G | 21628360-T-G | ** | |||||||
23802269-A-C | 21640383-A-C | ** | |||||||
23875303-G-T | 21713417-G-T | ** | |||||||
23875653-C-A | 21713767-C-A | ** | |||||||
21757768-T-C | ** | ||||||||
23996895-C-T | 21850748-C-T | ** | |||||||
24291299-T-C | 22145152-T-C | P3_t1 | ** | ||||||
24371906-G-T | 22225759-G-T | ** | |||||||
24405244-C-A | 22259097-C-A | ** | |||||||
24407229-A-T | 22261082-A-T | ** | |||||||
24421996-G-A | 22275849-G-A | ** | |||||||
24422053-G-A | 22275906-G-A | ** | |||||||
24432864-A-C | 22286717-A-C | ** | |||||||
24664407-T-G | 22518260-T-G | P3_b2 | ** | ||||||
24836734-G-GGGAA | 22690587-G-GGGAA | P3_b2 | 15×GGAA | ** | |||||
24884196-A-T | 22738049-A-T | g1 | ** | ||||||
25096445-A-AAG | 22950298-A-AAG | g1 | ** | ||||||
25096448-G-A | 22950301-G-A | FGC64809 | g1 | 20×GAAA | ** | ||||
25592926-A-C | 23446779-A-C | P1_gr1 | ** | ||||||
25956008-G-A | 23809861-G-A | P1_Y1 | ** | ||||||
25956009-TAC-T | 23809862-TAC-T | P1_Y1 | ** | ||||||
26400784-T-C | 24254637-T-C | P1_Y1 | ** | ||||||
26415779-A-T | 24269632-A-T | P1_Y1 | ** | ||||||
26415786-A-C | 24269639-A-C | P1_Y1 | ** | ||||||
26415788-T-A | 24269641-T-A | P1_Y1 | ** | ||||||
27021913-C-A | 24875766-C-A | P1_r4 | ** | ||||||
27398506-G-A | 25252359-G-A | P1_g3 | ** | ||||||
27423452-G-T | 25277305-G-T | P1_g3 | ** | ||||||
27521950-T-C | 25375803-T-C | P1_Y2 | ** | ||||||
27546772-T-G | 25400625-T-G | P1_Y2 | ** | ||||||
27838564-T-G | 25692417-T-G | P1_Y2 | ** | ||||||
27952019-G-T | 25805872-G-T | P1_Y2 | ** | ||||||
28473916-G-A | 26327769-G-A | ** | |||||||
28473925-A-C | 26327778-A-C | ** | |||||||
28478747-T-C | 26332600-T-C | ** | |||||||
28482916-A-G | 26336769-A-G | ** | |||||||
28482919-A-C | 26336772-A-C | ** | |||||||
28482921-C-T | 26336774-C-T | ** | |||||||
28497055-C-A | 26350908-C-A | ** | |||||||
28510416-C-A | 26364269-C-A | ** | |||||||
28531460-A-G | 26385313-A-G | ** | |||||||
28550016-G-T | 26403869-G-T | ** | |||||||
28598516-C-A | 26452369-C-A | ** | |||||||
28608520-C-A | 26462373-C-A | ** | |||||||
28612175-G-T | 26466028-G-T | ** | |||||||
28635613-C-A | 26489466-C-A | ** | |||||||
28643918-A-T | 26497771-A-T | ** | |||||||
28719446-C-A | 26573299-C-A | Y113318 | ** | ||||||
28724740-T-C | 26578593-T-C | ** | |||||||
28724779-C-A | 26578632-C-A | ** | |||||||
28746958-C-G | 26600811-C-G | ** | |||||||
28754988-C-A | 26608841-C-A | ** | |||||||
28758262-A-C | 26612115-A-C | ** | |||||||
28767221-A-G | 26621074-A-G | ** | |||||||
28773983-C-A | 26627836-C-A | ** | |||||||
28791360-GTGCAGAGGAA-G | 26645213-GTGCAGAGGAA-G | ** | |||||||
56681976-G-T | ** | ||||||||
56681977-G-T | ** | ||||||||
56681990-T-TCACCCGACA | ** | ||||||||
56682013-A-G | ** | ||||||||
56682015-T-A | ** | ||||||||
56771158-G-A | ** | ||||||||
56837827-A-C | ** | ||||||||
56839114-C-T | ** | ||||||||
56842126-G-T | ** | ||||||||
56847164-C-T | ** | ||||||||
56847222-A-T | ** | ||||||||
56847223-C-T | ** | ||||||||
13464360-A-AC | 11308684-A-AC | *** | |||||||
9983012-A-G | 10145403-A-G | *** | |||||||
13489990-C-A | 11334314-C-A | *** | |||||||
19990928-A-C | 17879048-A-C | P5_Prx | *** | ||||||
9961029-T-C | 10123420-T-C | *** | |||||||
10016285-G-T | 10178676-G-T | *** | |||||||
9961049-G-C | 10123440-G-C | *** | |||||||
14772676-A-T | 12660745-A-T | FT311941 | 21×T | *** | *** | ||||
16588668-T-TA | 14476788-T-TA | 10×A | *** | ||||||
3279629-C-T | 3411588-C-T | *** | |||||||
5976793-AGT-A | 6108752-AGT-A | 8×GT | *** | ||||||
14772674-C-T | 12660743-C-T | *** | |||||||
28792982-A-C | 26646835-A-C | *** | |||||||
28801948-A-T | 26655801-A-T | *** | |||||||
7769254-CT-C | 7901213-CT-C | 10×T | *** | ||||||
28801907-G-GC | 26655760-G-GC | *** | |||||||
9784749-T-A | 9947140-T-A | FTB16865 | 11×A | *** | |||||
17680075-A-T | 15568195-A-T | *** | |||||||
13859374-G-A | 11738668-G-A | DYZ17 | *** | ||||||
9937274-T-C | 10099665-T-C | *** | |||||||
22221015-G-T | 20059129-G-T | DYZ19 | *** | ||||||
22368026-T-A | 20206140-T-A | DYZ19 | *** | ||||||
22436112-G-T | 20274226-G-T | DYZ19 | *** | ||||||
25095987-G-A | 22949840-G-A | g1 | *** | ||||||
25310525-G-T | 23164378-G-T | P2_r1 | *** | ||||||
26199115-G-A | 24052968-G-A | P1_Y1 | *** | ||||||
10796661-C-A | *** | ||||||||
10796662-C-G | *** | ||||||||
10796687-C-A | *** | ||||||||
7134894-CAAA-C | 7266853-CAAA-C | 13×A | *** | ||||||
19486877-A-T | 17374997-A-T | *** | |||||||
14898429-A-T | 12786495-A-T | *** | |||||||
19486891-C-T | 17375011-C-T | *** | |||||||
15581110-G-T | 13469230-G-T | *** | |||||||
13483322-T-C | 11327646-T-C | *** | |||||||
16194776-ATT-A | 14082896-ATT-A | 13×T | *** | ||||||
13485912-C-G | 11330236-C-G | *** | |||||||
10786433-T-C | *** | ||||||||
19183530-G-T | 17071650-G-T | *** | |||||||
2840088-G-A | 2972047-G-A | *** | |||||||
3389014-C-A | 3520973-C-A | *** | |||||||
4063921-C-A | 4195880-C-A | *** | |||||||
4408497-C-A | 4540456-C-A | *** | |||||||
4769498-C-A | 4901457-C-A | *** | |||||||
5967726-C-A | 6099685-C-A | *** | |||||||
6368908-G-T | 6500867-G-T | *** | |||||||
6732384-C-A | 6864343-C-A | *** | |||||||
6882679-CT-C | 7014638-CT-C | *** | |||||||
6983589-CTGTG-C,CTG | 7115548-CTGTG-C,CTG | 20×TG | *** | ||||||
7166634-A-T | 7298593-A-T | FT294792 | *** | ||||||
7311484-C-T | 7443443-C-T | *** | |||||||
7409907-A-G | 7541866-A-G | *** | |||||||
7765626-C-A | 7897585-C-A | *** | |||||||
8649899-G-A | 8781858-G-A | *** | |||||||
8773858-CAAAA-C,CAAAAA | 8905817-CAAAA-C,CAAAAA | 16×A | *** | ||||||
10080392-G-T | 10242783-G-T | *** | |||||||
10693991-A-AATTCCATTCC | *** | ||||||||
10796106-C-A | *** | ||||||||
10796135-T-G | *** | ||||||||
10844619-A-T | *** | ||||||||
10918309-G-T | *** | ||||||||
10937827-T-C | *** | ||||||||
10937829-T-C | *** | ||||||||
10937839-G-A | *** | ||||||||
10937840-T-A | *** | ||||||||
10962875-C-A | *** | ||||||||
11031335-C-A | *** | ||||||||
13304170-T-C | 11148494-T-C | *** | |||||||
13483890-T-C | 11328214-T-C | *** | |||||||
13927559-C-A | 11806853-C-A | *** | |||||||
14059583-C-A | 11938877-C-A | *** | |||||||
14220516-C-A | 12099810-C-A | *** | |||||||
14359926-A-G | 12239221-A-G | *** | |||||||
14425992-TGCCACTGC-T | 12305267-TGCCACTGC-T | *** | |||||||
14527002-C-A | 12415203-C-A | *** | |||||||
14594180-C-A | 12482380-C-A | *** | |||||||
14627347-C-A | 12515415-C-A | *** | |||||||
14742060-G-T | 12630128-G-T | *** | |||||||
14827255-GTT-G,GT | 12715322-GTT-G,GT | 14×T | *** | ||||||
14916890-CAAA-C,CAAAA | 12804957-CAAA-C,CAAAA | 15×A | *** | ||||||
14995720-A-C | 12883805-A-C | *** | |||||||
14995726-G-A | 12883811-G-A | *** | |||||||
14995734-C-T | 12883819-C-T | *** | |||||||
15156440-C-A | 13044527-C-A | *** | |||||||
15276882-GAAA-G,GAAAAA | 13164971-GAAA-G,GAAAAA | 18×A | *** | ||||||
15309805-G-A | 13197910-G-A | *** | |||||||
15685135-C-T | 13573255-C-T | *** | |||||||
15901648-C-A | 13789768-C-A | *** | |||||||
15932362-C-A | 13820482-C-A | *** | |||||||
16506563-C-A | 14394683-C-A | *** | |||||||
16943387-C-A | 14831507-C-A | *** | |||||||
17170187-TTG-T | 15058307-TTG-T | *** | |||||||
17673082-C-A | 15561202-C-A | *** | |||||||
17911837-C-A | 15799957-C-A | *** | |||||||
19183542-G-A | 17071662-G-A | *** | |||||||
19216224-C-A | 17104344-C-A | *** | |||||||
19268348-C-A | 17156468-C-A | *** | |||||||
19536919-C-A | 17425039-C-A | *** | |||||||
20063941-TAAAA-T,TAA | 17952061-TAAAA-T,TAA | P5_Gap | 18×A | *** | |||||
20804883-GTG-G,GTA | 18642997-GTG-G,GTA | P4_Gap | *** | ||||||
22300732-T-C | 20138846-T-C | DYZ19 | *** | ||||||
22723371-T-C | 20561485-T-C | *** | |||||||
22723379-T-C | 20561493-T-C | *** | |||||||
22814056-C-A | 20652170-C-A | *** | |||||||
23076220-A-G | 20914334-A-G | *** | |||||||
23206993-G-T | 21045107-G-T | *** | |||||||
23535520-C-A | 21373634-C-A | FT205789 | *** | ||||||
23544818-C-T | 21382932-C-T | *** | |||||||
23802444-A-T | 21640558-A-T | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.