Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > L513/S215/DF1 > Z23532 > FGC32624 > FGC32631

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
104294
BigY2
104294
BigY3
104294
18284648-A-C 16172768-A-C BY175765 P6_Prx A+
10094113-C-A 10256504-C-A A*
19710246-G-T 17598366-G-T P5_Prx A*
4618895-C-T 4750854-C-T A*
19969813-C-T 17857933-C-T P5_Prx ***A*
20721470-A-T 18559584-A-T P4_Prx A*
20486772-G-GA 18324886-G-GA P5_Dst 11×AA*
16163592-T-TA 14051712-T-TA P8_Dst 13×AA*
7444297-A-AT 7576256-A-AT A*
20939318-C-T 18777432-C-T P4_Dst A*
25604270-C-T 23458123-C-T P1_gr1 A*
28345690-T-TAC 26199543-T-TAC P1_gr2 19×ACA*
18501374-A-AT 16389494-A-AT P6_Dst 10×TA*
13314601-C-T 11158925-C-T BY85152 ++
13996205-C-T 11875499-C-T Y**+
15222-G-C +
6727483-G-A 6859442-G-A Y+
19161999-T-C 17050119-T-C Y103855 YY**+
3317961-G-C 3449920-G-C +
16865950-T-C 14754070-T-C Y97532 YY**+
23827541-AC-A 21665655-AC-A +
13309706-G-A 11154030-G-A FGC75416 **+
9886605-G-T 10048996-G-T Y89476 YY+++
13991772-CT-C 11871066-CT-C 10×T+++
6860881-G-A 6992840-G-A BY11530 YY+++
2694283-C-T 2826242-C-T BY11529 YY+++
23075338-G-A 20913452-G-A Y110540 YY+++
22805215-T-C 20643329-T-C Y109800 YY+++
19713183-CT-C 17601303-CT-C P5_Prx 17×T+
21403507-C-A 19241621-C-A Y106382 YY+++
17983676-G-T 15871796-G-T Y100875 Y+++
9443959-G-A 9606350-G-A Y88991 YY+++
8736001-C-A 8867960-C-A Y87861 Y**++
14485936-A-G 12365205-A-G **
14395231-C-A 12274527-C-A **
14431591-C-A 12310864-C-A **
9998040-C-G 10160431-C-G **
14492738-G-T 12380935-G-T **
14585696-G-T 12473896-G-T **
14279086-C-G 12158380-C-G **
14618676-C-A 12506874-C-A **
14633182-C-A 12521251-C-A **
14283608-C-A 12162902-C-A **
14021359-T-A 11900653-T-A **
14224351-A-G 12103645-A-G **
14218582-A-G 12097876-A-G **
14195808-C-T 12075102-C-T **
14195801-A-G 12075095-A-G **
14755710-C-T 12643779-C-T **
14006763-T-C 11886057-T-C **
13999226-T-C 11878520-T-C **
20647539-G-T 18485653-G-T A202 ZS2500 P4_Prx **
13985587-A-G 11864881-A-G **
13924454-C-A 11803748-C-A **
13920874-G-A 11800168-G-A **
13909208-G-C 11788502-G-C **
14698365-T-C 12586431-T-C **
15442428-A-G 13330548-A-G **
14871291-C-A 12759361-C-A **
16048806-A-G 13936926-A-G **
16701468-A-C 14589588-A-C **
16674860-G-T 14562980-G-T **
16636720-C-A 14524840-C-A **
16619852-C-A 14507972-C-A **
16573449-G-A 14461569-G-A **
16573303-A-G 14461423-A-G **
16421700-G-T 14309820-G-T **
16399207-C-A 14287327-C-A **
16176722-T-C 14064842-T-C **
16171842-T-A 14059962-T-A **
16044503-C-A 13932623-C-A **
14949081-A-G 12837155-A-G **
15967600-C-A 13855720-C-A **
15937105-G-T 13825225-G-T **
15926972-C-A 13815092-C-A **
15909306-TA-T 13797426-TA-T **
15842787-C-A 13730907-C-A **
15791197-TA-T 13679317-TA-T **
15776931-T-C 13665051-T-C **
15743690-G-C 13631810-G-C **
13902977-G-T 11782271-G-T **
15210974-G-T 13099060-G-T **
15178969-C-A 13067055-C-A **
13908659-G-T 11787953-G-T **
13642259-T-C 11486583-T-C **
13860879-G-A 11740173-G-A **
10780551-C-A **
10908313-G-T **
10907564-G-T **
10905655-C-A **
10872914-G-A **
10849453-C-T **
10842538-T-C **
10833481-C-T **
10818548-C-A **
10794148-C-A **
10786890-G-T **
10777808-C-A **
10934495-C-A **
10770806-C-A **
10768958-C-A **
10759387-C-GAA **
10753065-C-G **
10686394-C-A **
10661206-G-A **
10659708-C-T **
10656172-T-C **
10653039-C-A **
10051373-G-A 10213764-G-A **
10018284-C-G 10180675-C-G **
10921986-T-A **
10936413-G-T **
13855782-A-T 11735076-A-T **
13317462-C-A 11161786-C-A **
11677086-G-A **
11651925-C-A **
13576265-C-A 11420589-C-A **
13485734-T-A 11330058-T-A **
13485713-T-C 11330037-T-C **
13476069-C-A 11320393-C-A **
13469551-C-A 11313875-C-A **
13424501-T-C 11268825-T-C **
13424495-T-A 11268819-T-A **
13424491-T-C 11268815-T-C **
9885129-A-G 10047520-A-G **
10943516-C-A **
16971352-T-A 14859472-T-A **
13229840-A-G 11074164-A-G **
13222050-G-T 11066374-G-T **
13196505-C-A 11040829-C-A **
13196260-C-A 11040584-C-A **
11029661-C-A **
11028293-C-A **
11009571-C-A **
10988240-T-G **
10952485-C-A **
10946509-C-A **
16931974-C-A 14820094-C-A **
18688299-T-G 16576419-T-G **
17175304-C-A 15063424-C-A **
24611544-TTTTTTG-T 22465397-TTTTTTG-T P3_t2 **
28529329-G-T 26383182-G-T **
28515240-G-A 26369093-G-A **
28500982-T-C 26354835-T-C **
28498001-T-C 26351854-T-C **
28484685-C-A 26338538-C-A **
28429313-T-C 26283166-T-C P1_gr2 **
28361502-A-T 26215355-A-T P1_gr2 **
28361455-T-A 26215308-T-A P1_gr2 **
27607067-G-T 25460920-G-T P1_Y2 **
25858393-AAC-A 23712246-AAC-A P1_Y1 **
25593002-T-C 23446855-T-C P1_gr1 **
24582248-G-GTT 22436101-G-GTT P3_t2 **
28536354-C-T 26390207-C-T **
24406389-A-T 22260242-A-T **
24109195-T-A 21963048-T-A P3_b1 **
21783779-G-T **
23838618-G-A 21676732-G-A **
23609466-C-A 21447580-C-A FGC3152 **
23514074-C-A 21352188-C-A **
23401344-T-C 21239458-T-C **
23285183-C-A 21123297-C-A **
23143228-C-A 20981342-C-A **
22956026-A-G 20794140-A-G **
22854685-G-T 20692799-G-T **
28529345-G-T 26383198-G-T **
28580237-TC-T 26434090-TC-T **
22619501-C-T 20457615-C-T **
24491473-C-A 22345326-C-A **
22287558-A-G 20125672-A-G DYZ19 **
22279535-T-A 20117649-T-A DYZ19 **
20248090-A-AT 18086204-A-AT P5_Dst **
19600394-T-TGGTG 17488514-T-TGGTG P5_Prx **
18348678-AT-A 16236798-AT-A P6_Prx 8×T**
17502893-T-A 15391013-T-A **
13476449-T-C 11320773-T-C **
6233751-C-A 6365710-C-A IR3_Dst **
3561500-CAAA-C 3693459-CAAA-C 25×A**
25520340-C-CTT 23374193-C-CTT P1_gr1 16×T**
26329239-A-C 24183092-A-C P1_Y1 **
26003049-T-TC 23856902-T-TC P1_Y1 **
28599029-C-A 26452882-C-A **
19713215-C-A 17601335-C-A P5_Prx **
56887029-C-A **
56843843-A-T **
56825740-C-CATATAT 12×AT**
28763996-C-A 26617849-C-A **
28706113-C-T 26559966-C-T **
28688106-T-C 26541959-T-C **
28671460-G-T 26525313-G-T **
28625486-C-A 26479339-C-A **
28624545-C-A 26478398-C-A **
28609638-C-A 26463491-C-A **
22649541-C-A 20487655-C-A **
22518361-A-G 20356475-A-G **
17255164-C-A 15143284-C-A **
9636547-T-A 9798938-T-A IR3_Prx **
19053298-C-A 16941418-C-A **
18989622-C-A 16877742-C-A **
18971222-A-G 16859342-A-G **
18969176-T-C 16857296-T-C **
18847807-T-A 16735927-T-A **
18846564-G-T 16734684-G-T **
18795062-C-A 16683182-C-A **
18780181-C-A 16668301-C-A **
18753265-G-A 16641385-G-A **
18702388-G-T 16590508-G-T Y102464 **
18688302-T-C 16576422-T-C **
18230621-C-A 16118741-C-A **
19056230-G-A 16944350-G-A **
18165738-C-T 16053858-C-T **
18155688-C-A 16043808-C-A **
17779457-C-A 15667577-C-A **
17739823-A-G 15627943-A-G **
17716838-C-A 15604958-C-A **
17701230-A-C 15589350-A-C **
17684330-C-A 15572450-C-A **
17575526-C-A 15463646-C-A **
17568423-A-G 15456543-A-G **
17512603-C-A 15400723-C-A **
17491931-C-A 15380051-C-A **
19056221-C-T 16944341-C-T **
19063362-G-T 16951482-G-T **
22134302-A-G 19972416-A-G **
21054367-G-C 18892481-G-C **
22134056-C-A 19972170-C-A **
22084728-A-G 19922842-A-G **
22076971-A-G 19915085-A-G **
21935095-C-A 19773209-C-A **
21885990-A-C 19724104-A-C **
21677156-C-A 19515270-C-A **
21488923-T-C 19327037-T-C **
21297799-T-A 19135913-T-A **
21209042-G-A 19047156-G-A **
21152348-C-A 18990462-C-A **
21068450-AAAT-A 18906564-AAAT-A **
21031254-C-A 18869368-C-A P4_Dst **
19065983-T-A 16954103-T-A **
20809635-A-T 18647749-A-T P4_Gap **
20614722-T-A 18452836-T-A P4_Prx **
20255094-T-TAAAA 18093208-T-TAAAA P5_Dst 20×A**
20073832-T-TAC 17961952-T-TAC P5_Dst **
20073827-C-T 17961947-C-T P5_Dst **
20073808-A-C 17961928-A-C P5_Dst **
19416560-C-G 17304680-C-G **
19252416-G-T 17140536-G-T **
19235578-T-A 17123698-T-A **
19083042-C-T 16971162-C-T **
19083013-C-A 16971133-C-A **
19073789-A-G 16961909-A-G **
9636563-T-G 9798954-T-G IR3_Prx **
9664213-C-A 9826604-C-A IR3_Prx **
9499032-A-G 9661423-A-G **
10849815-C-A **
13221998-G-A 11066322-G-A **
15379272-CT-C 13267392-CT-C 9×T**
7107533-C-A 7239492-C-A **
16171583-C-A 14059703-C-A **
28536213-C-A 26390066-C-A **
28613024-C-A 26466877-C-A **
9140161-C-A 9302552-C-A **
19544187-C-A 17432307-C-A **
14468436-C-A 12347705-C-A **
2665601-C-A 2797560-C-A **
19130773-C-T 17018893-C-T **
4757206-C-A 4889165-C-A **
17103371-C-A 14991491-C-A **
27829222-A-T 25683075-A-T P1_Y2 **
4900246-C-A 5032205-C-A **
6856759-C-A 6988718-C-A **
13226572-C-A 11070896-C-A **
8214082-C-A 8346041-C-A **
10018348-A-C 10180739-A-C **
19562606-C-A 17450726-C-A **
10769004-G-C **
10768999-G-GTT **
10768994-G-T **
14527717-C-A 12415918-C-A **
14100288-C-A 11979582-C-A **
10768959-A-AATCCG **
9441219-C-A 9603610-C-A **
3028762-G-T 3160721-G-T **
3020640-A-G 3152599-A-G **
3020607-G-T 3152566-G-T **
2974361-C-A 3106320-C-A **
2926471-T-C 3058430-T-C **
2856821-C-A 2988780-C-A **
2855467-ATTTT-A 2987426-ATTTT-A 16×T**
2773801-G-T 2905760-G-T **
6424943-C-A 6556902-C-A **
28610141-C-A 26463994-C-A **
4928902-A-G 5060861-A-G **
23291026-C-A 21129140-C-A **
26314667-C-A 24168520-C-A P1_Y1 **
3592062-C-A 3724021-C-A **
6882397-C-A 7014356-C-A **
18121683-C-A 16009803-C-A **
14607575-G-T 12495777-G-T **
6688673-C-A 6820632-C-A **
25088487-C-A 22942340-C-A g1 **
14563460-A-G 12451660-A-G **
3534526-CAA-C 3666485-CAA-C 15×A**
7280928-C-A 7412887-C-A **
25029894-C-A 22883747-C-A g1 **
16450249-C-A 14338369-C-A **
10768986-T-A **
14446678-C-A 12325951-C-A **
3044057-G-T 3176016-G-T **
14832176-CA-C 12720243-CA-C **
10952448-T-A **
10952425-T-C **
10952419-C-G **
14518431-C-A 12406632-C-A **
7172494-G-T 7304453-G-T **
10789209-C-A **
28812177-A-G 26666030-A-G **
13871389-C-A 11750683-C-A **
13324700-T-C 11169024-T-C **
13512335-C-A 11356659-C-A **
10952421-T-A **
23006634-C-A 20844748-C-A **
14948976-T-A 12837050-T-A **
14570756-A-G 12458956-A-G 22×T**
11264-C-T **
11657425-C-A **
13809489-C-A 11688783-C-A **
19693510-AT-A 17581630-AT-A P5_Prx 12×T**
26379411-CAAAA-C 24233264-CAAAA-C P1_Y1 22×A**
13981983-A-AT 11861277-A-AT **
22252503-C-A 20090617-C-A DYZ19 **
15394995-T-C 13283115-T-C **
22279537-G-T 20117651-G-T BY215883 DYZ19 **
17224433-G-A 15112553-G-A CTS6989 ****
10952454-C-A **
10691528-C-A **
10753052-C-A **
16180368-C-A 14068488-C-A **
15732992-C-A 13621112-C-A **
6582146-C-A 6714105-C-A **
14107096-C-A 11986390-C-A **
23096645-C-A 20934759-C-A **
5852352-C-A 5984311-C-A **
10952467-T-A **
15946689-C-A 13834809-C-A **
13937125-C-A 11816419-C-A **
4123995-C-A 4255954-C-A **
6856801-C-A 6988760-C-A **
14385059-C-A 12264355-C-A **
21391554-C-A 19229668-C-A **
9697539-A-ACT 9859930-A-ACT IR3_Prx **
10988840-C-T **
21672111-C-A 19510225-C-A **
4509398-C-A 4641357-C-A **
8912007-G-T 9043966-G-T **
25617175-T-TTGTG 23471028-T-TTGTG P1_gr1 19×TG**
24406448-G-T 22260301-G-T **
28764920-C-A 26618773-C-A **
4004896-G-T 4136855-G-T **
4999579-C-A 5131538-C-A **
10782788-C-A **
10653048-C-T BY31705 **
3028763-A-G 3160722-A-G **
19597210-T-TATC 17485330-T-TATC P5_Prx **
3227010-A-T 3358969-A-T **
6147437-A-T 6279396-A-T IR3_Dst **
6926267-C-A 7058226-C-A **
6922789-A-G 7054748-A-G **
6915999-A-G 7047958-A-G **
6831958-C-A 6963917-C-A **
6829589-T-A 6961548-T-A **
6752379-G-C 6884338-G-C **
6752069-T-C 6884028-T-C **
6748825-C-A 6880784-C-A **
6608748-G-T 6740707-G-T **
6541443-T-C 6673402-T-C **
6369975-C-A 6501934-C-A **
6064744-G-T 6196703-G-T **
7021334-C-T 7153293-C-T **
3286558-A-T 3418517-A-T **
5944241-C-T 6076200-C-T **
5931953-C-A 6063912-C-A **
5931916-C-CTT 6063875-C-CTT 32×T**
5867221-G-T 5999180-G-T **
5842804-G-T 5974763-G-T **
5815002-C-A 5946961-C-A **
5728529-G-T 5860488-G-T **
5650719-T-A 5782678-T-A **
5650468-C-A 5782427-C-A **
5563023-T-C 5694982-T-C **
6977178-C-A 7109137-C-A **
7043996-C-A 7175955-C-A **
5537210-G-T 5669169-G-T **
8291003-A-T 8422962-A-T **
9427614-A-AT 9590005-A-AT **
9414146-G-A 9576537-G-A **
9403008-C-A 9565399-C-A **
8976988-A-G 9139379-A-G **
9110595-G-T **
9056630-C-A **
8856769-C-A 8988728-C-A **
8806947-C-G 8938906-C-G **
8724982-G-A 8856941-G-A **
8699696-C-A 8831655-C-A **
8291003-A-AG 8422962-A-AG **
8290999-T-C 8422958-T-C **
7085684-C-A 7217643-C-A **
8290980-A-G 8422939-A-G **
8279777-G-T 8411736-G-T **
8076074-C-A 8208033-C-A **
8061671-A-T 8193630-A-T **
7436226-C-T 7568185-C-T **
7436149-C-T 7568108-C-T **
7377496-G-A 7509455-G-A **
7236476-C-T 7368435-C-T **
7202252-C-A 7334211-C-A **
7148708-G-T 7280667-G-T **
7134093-C-A 7266052-C-A **
7131848-T-A 7263807-T-A **
5550278-G-T 5682237-G-T **
6037960-T-C 6169919-T-C **
5497514-T-C 5629473-T-C **
3817389-G-A 3949348-G-A **
4216753-C-T 4348712-C-T **
4216691-T-A 4348650-T-A **
4139995-G-T 4271954-G-T **
4062666-A-G 4194625-A-G **
4034586-C-T 4166545-C-T **
5469111-T-A 5601070-T-A **
4004713-G-T 4136672-G-T **
3904951-T-C 4036910-T-C **
3853464-C-A 3985423-C-A **
3734591-G-T 3866550-G-T **
4374889-G-A 4506848-G-A **
3734548-G-T 3866507-G-T **
3709885-C-A 3841844-C-A **
3664064-A-G 3796023-A-G **
3664007-C-A 3795966-C-A **
3651647-G-T 3783606-G-T **
3528473-G-T 3660432-G-T **
3528421-G-T 3660380-G-T **
3514523-T-TC 3646482-T-TC **
3492787-C-A 3624746-C-A **
3295649-T-C 3427608-T-C **
4294562-T-C 4426521-T-C **
4004727-G-T 4136686-G-T **
11881-T-G **
4628027-T-A 4759986-T-A **
5368363-G-A 5500322-G-A **
5359656-T-C 5491615-T-C **
5318742-C-A 5450701-C-A **
5212738-C-A 5344697-C-A **
5185468-C-G 5317427-C-G **
5161685-G-T 5293644-G-T **
5126523-C-A 5258482-C-A **
4969096-C-A 5101055-C-A **
4874011-C-A 5005970-C-A **
4805809-G-T 4937768-G-T **
4700228-C-A 4832187-C-A **
4930481-T-C 5062440-T-C **
4467243-C-A 4599202-C-A **
4473701-A-C 4605660-A-C **
4466588-C-A 4598547-C-A **
13456275-G-GT 11300599-G-GT ***
5905890-CA-C 6037849-CA-C 27×A***
14764914-ATT-A,AT 12652983-ATT-A,AT 23×T***
3253170-CTTT-C,CTT 3385129-CTTT-C,CTT 22×T***
17503548-A-C 15391668-A-C ***
17100411-C-A 14988531-C-A ***
27030364-C-A 24884217-C-A P1_r4 ***
6634259-GTT-G,GT 6766218-GTT-G,GT 15×T***
16981161-T-C 14869281-T-C ***
27053578-T-TA 24907431-T-TA P1_r4 11×A***
11009162-G-T ***
26237245-T-G 24091098-T-G P1_Y1 ***
24951607-G-C 22805460-G-C g1 ***
23827541-AC-A,AA 21665655-AC-A,AA ***
5625520-T-A 5757479-T-A ***
3500495-G-T 3632454-G-T ***
58969395-A-G 56823248-A-G ***
13456254-C-CATACCA 11300578-C-CATACCA ***
16705141-A-T 14593261-A-T ***
10968488-C-A ***
5147441-C-CA 5279400-C-CA 30×A***
22536842-G-T 20374956-G-T ***
10999918-C-CGAGTA ***
14391851-C-A 12271147-C-A ***
10938690-A-T ***
14986686-C-A 12874754-C-A ***
16008124-C-A 13896244-C-A ***
23827540-TAC-T,TA 21665654-TAC-T,TA ***
3930683-TTA-T 4062642-TTA-T ***
28658694-T-C 26512547-T-C ***
15744062-C-A 13632182-C-A ***
7336096-T-C 7468055-T-C ***
18892145-T-A 16780265-T-A ***
30207-C-A ***
10805219-G-T ***
56833857-CTCCACTCCAATCCAT-C ***
7534643-CAAAA-C,CAA 7666602-CAAAA-C,CAA 17×A***
56830759-CCATTCTATCCCATTC-C,CCATTCCATCCCATTG ***
5022035-C-A 5153994-C-A ***
8166813-C-T 8298772-C-T ***
19508177-CTTTT-C,CTTT 17396297-CTTTT-C,CTTT 19×T***
13489619-ACCCCCACCACCACCCACCACCC-A 11333943-ACCCCCACCACCACCCACCACCC-A ***
8170530-G-A 8302489-G-A ***
15975124-C-A 13863244-C-A ***
56829429-C-T ***
14586013-C-A 12474213-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 1042941089941279300738015596
Kit: 104294996843480964117967551
Kit: 1042941484422093217498294074
Used in age calculations1484422093217498294074
Counts of SNPs139
Variant counts last updated 2019-07-19 22:33:42.



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