Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > Z9 > Z30/S271 > Z2 > Z7 > Z8 > Z1 > Z346 > Z343 > Y19620 > S6881 > FGC42045 > ~22345266-T-A > A11376

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
4W8EP
23161910-G-A 21000024-G-A CTS11562 Y+
23802655-T-G 21640769-T-G FGC50432 Y+
5414796-C-A 5546755-C-A FGC50426 +
5058699-G-A 5190658-G-A FGC50425 +
17941537-T-C 15829657-T-C FGC50430 YY+
8976123-G-A 9138514-G-A FGC50427 Y*
9596566-GC-G 9758957-GC-G IR3_Prx *
3217288-A-T 3349247-A-T FGC50424 *
13670981-T-C 11515305-T-C FGC50428 *
13207399-G-T 11051723-G-T **
21090312-C-A 18928426-C-A **
3831694-G-T 3963653-G-T **
3837638-G-T 3969597-G-T **
22871965-G-C 20710079-G-C **
3991340-C-A 4123299-C-A **
16429872-G-A 14317992-G-A **
4422007-G-T 4553966-G-T **
4431198-T-A 4563157-T-A **
4431199-T-G 4563158-T-G **
3583049-T-TACAC 3715008-T-TACAC 12×AC**
4431200-G-T 4563159-G-T **
9916922-T-C 10079313-T-C **
17024377-C-T 14912497-C-T **
28600380-G-A 26454233-G-A **
28600379-T-C 26454232-T-C **
5704639-T-C 5836598-T-C **
2699548-G-A 2831507-G-A **
21125751-T-A 18963865-T-A **
7925966-T-C 8057925-T-C **
22668266-A-AG 20506380-A-AG **
14819895-T-C 12707962-T-C **
18218789-G-T 16106909-G-T **
13535727-GTA-G 11380051-GTA-G **
15698757-GACACACACACACAC-G 13586877-GACACACACACACAC-G 24×AC**
17459484-GC-G 15347604-GC-G **
13954127-A-AAATAATAATAAT 11833421-A-AAATAATAATAAT 12×AAT**
22023316-A-G 19861430-A-G **
28600408-T-C 26454261-T-C **
17486375-T-C 15374495-T-C ***
17731740-C-A 15619860-C-A ***
23392113-C-A 21230227-C-A ***
17475092-G-A 15363212-G-A ***
17974388-T-G 15862508-T-G ***
23824953-T-A 21663067-T-A ***
18140666-A-T 16028786-A-T ***
24210851-G-A 22064704-G-A P3_b1 ***
24365955-C-A 22219808-C-A ***
17364113-T-A 15252233-T-A ***
23396772-A-C 21234886-A-C ***
17923677-G-A 15811797-G-A ***
19528348-A-G 17416468-A-G ***
23016528-C-T 20854642-C-T ***
21948199-C-A 19786313-C-A ***
20835458-T-C 18673572-T-C BY212790 P4_Gap ***
21061653-T-G 18899767-T-G ***
19318205-T-G 17206325-T-G ***
21086066-A-T 18924180-A-T ***
19129152-G-A 17017272-G-A ***
24485687-T-A 22339540-T-A ***
21468392-T-G 19306506-T-G ***
21880821-C-G 19718935-C-G ***
22341413-G-T 20179527-G-T DYZ19 ***
20570145-G-A 18408259-G-A P5_Dst ***
18580023-A-G 16468143-A-G ***
18443403-T-G 16331523-T-G P6_Dst ***
22341532-A-T 20179646-A-T DYZ19 ***
22342199-C-A 20180313-C-A DYZ19 ***
22668379-G-A 20506493-G-A ***
22767665-A-G 20605779-A-G ***
18443395-T-G 16331515-T-G P6_Dst ***
18265985-T-C 16154105-T-C ***
18222746-T-A 16110866-T-A ***
13452384-T-C 11296708-T-C ***
24970769-A-G 22824622-A-G g1 ***
13453283-TG-CC 11297607-TG-CC ***
3281904-AT-A 3413863-AT-A ***
3411690-CAA-C 3543649-CAA-C 30×A***
4431198-TTG-AGT 4563157-TTG-AGT ***
7775822-TGC-T 7907781-TGC-T ***
13323492-GAC-G 11167816-GAC-G ***
13347926-AACACATAC-A 11192250-AACACATAC-A ***
13448784-CACA-TACT 11293108-CACA-TACT ***
13452369-TTC-CTG 11296693-TTC-CTG ***
13452384-TTC-CTG 11296708-TTC-CTG ***
13453891-TCCAA-AACAT 11298215-TCCAA-AACAT ***
28795074-CA-TG 26648927-CA-TG ***
13957902-AG-CC 11837196-AG-CC ***
14047209-CAT-C 11926503-CAT-C ***
21501083-GTTATT-G 19339197-GTTATT-G ***
22346882-AGTC-CTTT 20184996-AGTC-CTTT DYZ19 ***
28600379-TG-CA 26454232-TG-CA ***
58838630-G-GGGTCC 56752240-T-TGGACC ***
58977041-CATC-TGTT 56830894-CATC-TGTT ***
58977825-CTCG-TTCC 56831678-CTCG-TTCC ***
58980029-TTCCACTCCACG-CTCCACTCCACT 56833882-TTCCACTCCACG-CTCCACTCCACT ***
19042179-C-CAA 16930299-C-CAA 17×A***
59021309-T-G 56875162-T-G ***
26242779-C-A 24096632-C-A P1_Y1 ***
58840812-A-G 56750059-T-C ***
26442058-T-C 24295911-T-C P1_Y1 ***
26495793-C-A 24349646-C-A P1_Y1 ***
26740467-T-A 24594320-T-A P1_g2 ***
28493575-G-A 26347428-G-A ***
28586797-C-G 26440650-C-G ***
28591193-T-C 26445046-T-C ***
58829354-G-C 56761517-C-G ***
58836302-C-T 56754569-G-A ***
58836914-T-C 56753957-A-G ***
58865728-G-A 56725143-C-T ***
59008209-G-T 56862062-G-T ***
58895534-G-T 56695337-C-A ***
58910549-G-C 56680322-C-G ***
58910652-T-G 56680219-A-C ***
58912930-T-C 56677941-A-G ***
58977044-C-T 56830897-C-T ***
58977051-C-G 56830904-C-G ***
58977072-C-T 56830925-C-T ***
58980088-A-C 56833941-A-C ***
58985977-C-T 56839830-C-T ***
58985983-T-C 56839836-T-C ***
28717098-A-G 26570951-A-G ***
15212485-T-G 13100571-T-G ***
16987875-C-T 14875995-C-T ***
3348611-T-A 3480570-T-A ***
25505169-G-A 23359022-G-A P1_gr1 ***
5088916-T-C 5220875-T-C ***
7723881-A-C 7855840-A-C ***
2791559-T-G 2923518-T-G ***
2791564-T-G 2923523-T-G ***
2897924-C-A 3029883-C-A ***
3029558-C-A 3161517-C-A ***
3152096-C-A 3284055-C-A ***
3167613-A-G 3299572-A-G ***
3547878-C-T 3679837-C-T ***
58977079-G-C 56830932-G-C ***
3601439-T-G 3733398-T-G ***
3687213-C-A 3819172-C-A ***
3809089-T-A 3941048-T-A ***
3920801-A-G 4052760-A-G ***
4019997-G-A 4151956-G-A ***
4167179-T-G 4299138-T-G ***
4220412-C-A 4352371-C-A ***
4381421-C-G 4513380-C-G ***
4533626-A-G 4665585-A-G ***
4628183-T-C 4760142-T-C ***
5453911-G-T 5585870-G-T ***
25709345-A-T 23563198-A-T P1_b3 ***
5647765-G-A 5779724-G-A ***
14156604-A-C 12035898-A-C ***
13712907-C-A 11557231-C-A BY156298 ***
13622397-GC-AT 11466721-GC-AT ***
5362579-GAC-G 5494538-GAC-G 13×AC***
16071747-TG-T 13959867-TG-T ***
24447151-AAAG-GAAA 22301004-AAAG-GAAA ***
18612803-A-G 16500923-A-G Y22986ZS5100 ***
3601548-A-C 3733507-A-C FGC9556 ***
7723876-A-T 7855835-A-T ***
13712937-T-C 11557261-T-C ***
59012590-T-G 56866443-T-G ***
22341539-A-T 20179653-A-T DYZ19 ***
22341418-T-C 20179532-T-C DYZ19 ***
58856285-T-A 56734586-A-T ***
58856299-C-A 56734572-G-T ***
22346904-C-G 20185018-C-G DYZ19 ***
58838486-G-T 56752385-C-A ***
4324851-T-A 4456810-T-A ***
58832977-C-A 56757894-G-T ***
28795663-CATC-GATA 26649516-CATC-GATA ***
58986528-TAC-CAT 56840381-TAC-CAT ***
13455783-CA-C 11300107-CA-C ***
5009282-A-G 5141241-A-G ***
5986624-A-G 6118583-A-G ***
16947289-G-T 14835409-G-T ***
14873214-T-G 12761284-T-G ***
14156647-A-G 12035941-A-G ***
14420806-G-T 12300081-G-T ***
14464431-T-G 12343704-T-G ***
14464435-G-C 12343708-G-C ***
14464445-A-G 12343718-A-G ***
14464455-A-G 12343728-A-G ***
14464459-C-A 12343732-C-A ***
14538420-C-T 12426621-C-T ***
14765955-T-G 12654024-T-G ***
14988991-G-A 12877057-G-A ***
14156637-T-C 12035931-T-C ***
23881858-T-C 21719972-T-C Z2884 ***
15235402-T-G 13123488-T-G ***
15685401-T-A 13573521-T-A ***
15696784-A-C 13584904-A-C ***
15731711-G-A 13619831-G-A ***
15734470-A-G 13622590-A-G ***
15805234-T-A 13693354-T-A ***
15871755-C-A 13759875-C-A ***
16316916-C-T 14205036-C-T ***
16397913-G-C 14286033-G-C ***
14156640-T-C 12035934-T-C ***
14156629-C-A 12035923-C-A ***
6198246-C-A 6330205-C-A IR3_Dst ***
9782956-G-C 9945347-G-C ***
6500818-A-G 6632777-A-G ***
6537889-A-G 6669848-A-G ***
6863840-G-T 6995799-G-T ***
7004842-G-T 7136801-G-T ***
7120629-C-A 7252588-C-A ***
7450808-A-G 7582767-A-G IR1_L ***
7852495-T-A 7984454-T-A ***
9034222-T-G 9196613-T-G ***
9338340-A-C 9500731-A-C ***
9870088-T-A 10032479-T-A ***
14156577-T-G 12035871-T-G ***
13141930-C-A 10631416-C-A ***
13333852-C-A 11178176-C-A ***
13452386-C-G 11296710-C-G ***
13452860-A-G 11297184-A-G ***
13453079-C-G 11297403-C-G ***
13468485-T-C 11312809-T-C ***
13493800-T-A 11338124-T-A ***
13547340-G-T 11391664-G-T ***
13714393-A-T 11558717-A-T ***
13855481-G-A 11734775-G-A ***
58980061-CCTTTCCATT-TCATTCTATA 56833914-CCTTTCCATT-TCATTCTATA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 4W8EP16930073100525538191863
Used in age calculations16930073100525538191863
Counts of SNPs23
Variant counts last updated 2019-06-16 23:15:20.



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