Tree Position

R-U106/S21 > Z2265 > Z381/S263 > S264/Z156 > S5520 > BY12135 > FGC11660 > FGC11674

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
1ZRQD
4950404-G-C 5082363-G-C FGC11657 +
23245821-T-G 21083935-T-G FGC11695 YY+
17958242-C-T 15846362-C-T FGC11685 YY+
14633319-C-A 12521388-C-A FGC11671 Y+
21065293-C-G 18903407-C-G FGC11689 YY+
18004692-G-A 15892812-G-A FGC11686 P7_Gap Y+
15876403-C-T 13764523-C-T FGC11677 YY*
15672120-A-G 13560240-A-G FGC11676 Y*
16397095-C-T 14285215-C-T FGC11679 Y*
58823336-C-CA 56767533-A-AT **
17385421-C-A 15273541-C-A 15×A**
14260974-A-T 12140268-A-T **
25877787-A-G 23731640-A-G P1_Y1 **
10036815-G-T 10199206-G-T **
15865946-C-CTTTTTTT 13754066-C-CTTTTTTT 37×T**
17835167-A-C 15723287-A-C **
3256333-C-T 3388292-C-T **
14286913-A-C 12166207-A-C **
14260983-A-T 12140277-A-T **
20758521-G-A 18596635-G-A P4_Prx ***
24608599-T-A 22462452-T-A P3_t2 ***
20292345-C-T 18130459-C-T P5_Dst ***
25681225-C-A 23535078-C-A P1_b3 ***
25681211-T-A 23535064-T-A P1_b3 ***
25680766-A-T 23534619-A-T P1_b3 ***
25383563-C-A 23237416-C-A P2_r2 ***
25333665-C-T 23187518-C-T P2_r1 ***
25207658-C-A 23061511-C-A P2_r1 ***
24608643-C-A 22462496-C-A P3_t2 ***
24608642-C-A 22462495-C-A P3_t2 ***
24581853-T-G 22435706-T-G P3_t2 ***
25681231-C-A 23535084-C-A P1_b3 ***
24581852-C-A 22435705-C-A P3_t2 ***
24422479-A-T 22276332-A-T ***
24381275-A-C 22235128-A-C ***
24305819-A-T 22159672-A-T P3_t1 ***
24193888-A-T 22047741-A-T P3_b1 ***
24193876-G-T 22047729-G-T P3_b1 ***
24193874-A-T 22047727-A-T P3_b1 ***
23521814-T-C 21359928-T-C ***
20424976-G-T 18263090-G-T P5_Dst ***
25681229-C-A 23535082-C-A P1_b3 ***
25842013-T-A 23695866-T-A P1_b3 ***
22695600-A-G 20533714-A-G ***
26481625-C-T 24335478-C-T P1_Y1 ***
27378791-A-G 25232644-A-G P1_g3 ***
27378788-G-A 25232641-G-A P1_g3 ***
20292340-C-G 18130454-C-G P5_Dst ***
27218673-G-T 25072526-G-T P1_g3 ***
27180129-T-A 25033982-T-A P1_g3 ***
27179401-C-A 25033254-C-A P1_g3 ***
27160370-C-A 25014223-C-A P1_g3 ***
26971176-C-T 24825029-C-T P1_r4 ***
26481626-C-T 24335479-C-T P1_Y1 ***
26194497-A-T 24048350-A-T P1_Y1 ***
25850467-T-C 23704320-T-C P1_Y1 ***
26194493-G-T 24048346-G-T P1_Y1 ***
26194491-C-T 24048344-C-T P1_Y1 ***
26194487-C-T 24048340-C-T P1_Y1 ***
26156747-G-T 24010600-G-T P1_Y1 ***
26156713-T-G 24010566-T-G P1_Y1 ***
26156709-T-A 24010562-T-A P1_Y1 ***
26056221-A-T 23910074-A-T P1_Y1 ***
20292341-A-G 18130455-A-G P5_Dst ***
20292342-C-A 18130456-C-A P5_Dst ***
23121025-G-A 20959139-G-A ***
22620152-G-A 20458266-G-A ***
21913219-A-C 19751333-A-C ***
22289458-G-T 20127572-G-T DYZ19 ***
22341502-T-C 20179616-T-C DYZ19 ***
20463401-T-A 18301515-T-A P5_Dst ***
22332782-G-C 20170896-G-C DYZ19 ***
22332782-G-T 20170896-G-T DYZ19 ***
22311396-G-T 20149510-G-T DYZ19 ***
20688288-A-C 18526402-A-C P4_Prx ***
22311366-C-G 20149480-C-G DYZ19 ***
22311343-C-G 20149457-C-G DYZ19 ***
22308320-C-A 20146434-C-A DYZ19 ***
22251744-G-T 20089858-G-T DYZ19 ***
20463394-T-A 18301508-T-A P5_Dst ***
20688303-C-G 18526417-C-G P4_Prx ***
22251719-A-T 20089833-A-T DYZ19 ***
22251716-C-T 20089830-C-T DYZ19 ***
20688305-A-T 18526419-A-T P4_Prx ***
20688378-T-A 18526492-T-A P4_Prx ***
22227089-T-G 20065203-T-G DYZ19 ***
20758518-G-A 18596632-G-A P4_Prx ***
22090494-T-C 19928608-T-C ***
22090428-C-T 19928542-C-T ***
22342824-T-G 20180938-T-G DYZ19 ***
22344693-T-A 20182807-T-A DYZ19 ***
22542880-G-T 20380994-G-T ***
22499877-G-A 20337991-G-A DYZ19 ***
22534146-T-A 20372260-T-A ***
20425390-C-T 18263504-C-T P5_Dst ***
22503926-G-T 20342040-G-T DYZ19 ***
22503114-T-G 20341228-T-G DYZ19 ***
22503081-T-C 20341195-T-C DYZ19 ***
22500140-G-C 20338254-G-C DYZ19 ***
22500133-T-A 20338247-T-A DYZ19 ***
20463384-T-A 18301498-T-A P5_Dst ***
27378801-C-A 25232654-C-A P1_g3 ***
20463385-A-G 18301499-A-G P5_Dst ***
22349222-G-A 20187336-G-A DYZ19 ***
22435774-T-G 20273888-T-G DYZ19 ***
22366560-C-G 20204674-C-G DYZ19 ***
22359810-G-T 20197924-G-T DYZ19 ***
22357230-A-T 20195344-A-T DYZ19 ***
22352881-G-T 20190995-G-T DYZ19 ***
20463386-C-A 18301500-C-A P5_Dst ***
22352656-G-T 20190770-G-T DYZ19 ***
22349319-G-C 20187433-G-C DYZ19 ***
22349315-G-A 20187429-G-A DYZ19 ***
22349244-C-A 20187358-C-A DYZ19 ***
27791968-T-G 25645821-T-G P1_Y2 ***
27423371-C-A 25277224-C-A P1_g3 ***
27423350-T-A 25277203-T-A P1_g3 ***
13465317-AGAGCT-TGAACC 11309641-AGAGCT-TGAACC ***
13716498-GAATAGAATC-CAGTGGAAGG 11560822-GAATAGAATC-CAGTGGAAGG ***
13559741-ACA-CTC 11404065-ACA-CTC ***
13535164-CATT-AATC 11379488-CATT-AATC ***
13513076-GGT-AGG 11357400-GGT-AGG ***
13488556-GGCGCGTT-AGCGGGTG 11332880-GGCGCGTT-AGCGGGTG ***
13483792-TCCTGAC-CCTTGAG 11328116-TCCTGAC-CCTTGAG ***
13481433-GTGC-TTGT 11325757-GTGC-TTGT ***
13481390-TGTAAGCAGAGCCTAGAAAAGA-ATAGGTAGATCCAACACAAGG 11325714-TGTAAGCAGAGCCTAGAAAAGA-ATAGGTAGATCCAACACAAGG ***
13480876-GGTG-CGTA 11325200-GGTG-CGTA ***
13467562-GCCT-ACCC 11311886-GCCT-ACCC ***
7984040-TAAAAAAA-T 8115999-TAAAAAAA-T 21×A***
17030587-TC-T 14918707-TC-T ***
7918033-GT-G 8049992-GT-G ***
7223194-CAAAAA-C 7355153-CAAAAA-C 22×A***
6808134-C-CAA 6940093-C-CAA 22×A***
6786911-ATTTTTT-A 6918870-ATTTTTT-A 17×T***
6720956-GCTCA-ACTCG 6852915-GCTCA-ACTCG ***
6147446-ATTTTTT-A 6279405-ATTTTTT-A IR3_Dst 19×T***
5289090-T-TACACAC 5421049-T-TACACAC 19×AC***
5252833-ATT-A 5384792-ATT-A 16×T***
5138547-C-CAAA 5270506-C-CAAA 17×A***
2888902-A-AAAAC 3020861-A-AAAAC ***
15750521-C-TT 13638641-C-TT ***
13734098-AATG-TATT 11578422-AATG-TATT ***
17332750-C-CCCAAA 15220870-C-CCCAAA 22×A***
58916245-A-T 56674626-T-A ***
22500115-TA-GT 20338229-TA-GT DYZ19 ***
58909104-CA-GC 56681766-TG-GC ***
58907254-AAATTGCA-CGATCT 56683610-TGCAATTT-AGATCG ***
58828104-AATCCC-A 56762761-AGGGAT-A ***
28802755-CATA-AATG 26656608-CATA-AATG ***
28653220-AGC-CCGATCT 26507073-AGC-CCGATCT ***
27971726-CAAA-C 25825579-CAAA-C P1_Y2 27×A***
27753130-CTTCC-TTTCT 25606983-CTTCC-TTTCT P1_Y2 ***
25954079-TTTTTC-ATATTT 23807932-TTTTTC-ATATTT P1_Y1 ***
23192205-TATG-CATA 21030319-TATG-CATA ***
22802868-A-ATTTTTTTTTTTTTTTTTTTTTTTTTTT 20640982-A-ATTTTTTTTTTTTTTTTTTTTTTTTTTT 32×T***
22768819-CTTTTT-C 20606933-CTTTTT-C 20×T***
22435752-TAGTGGTGAGTTTT-CTGG 20273866-TAGTGGTGAGTTTT-CTGG DYZ19 ***
17835137-TC-T 15723257-TC-T ***
22360716-AC-CA 20198830-AC-CA DYZ19 ***
22360028-GAGTTTCTTCC-TTGTGTCCCCT 20198142-GAGTTTCTTCC-TTGTGTCCCCT DYZ19 ***
22352646-CCATCT-TCTTCTG 20190760-CCATCT-TCTTCTG DYZ19 ***
22332781-GG-TT 20170895-GG-TT DYZ19 ***
22297250-TTATGTG-AGATTTC 20135364-TTATGTG-AGATTTC DYZ19 ***
22289482-TG-GA 20127596-TG-GA DYZ19 ***
22289452-C-CT 20127566-C-CT DYZ19 ***
22289441-ACAGACC-GCATAA 20127555-ACAGACC-GCATAA DYZ19 ***
22236716-TAC-CAG 20074830-TAC-CAG DYZ19 ***
19646296-TTGTGC-CTGCTT 17534416-TTGTGC-CTGCTT P5_Prx ***
19130738-C-TTTT 17018858-C-TTTT 33×T***
58916253-A-T 56674618-T-A ***
58913114-A-T 56677757-T-A ***
27423362-G-A 25277215-G-A P1_g3 ***
27782988-C-A 25636841-C-A P1_Y2 ***
28207523-T-C 26061376-T-C P1_b4 ***
27994724-A-T 25848577-A-T P1_Y2 ***
27994723-C-T 25848576-C-T P1_Y2 ***
27994717-A-T 25848570-A-T P1_Y2 ***
27941926-G-A 25795779-G-A P1_Y2 ***
27941925-C-A 25795778-C-A P1_Y2 ***
27941923-G-A 25795776-G-A P1_Y2 ***
27941919-G-A 25795772-G-A P1_Y2 ***
27900729-G-C 25754582-G-C P1_Y2 ***
27900723-C-T 25754576-C-T P1_Y2 ***
27900716-T-A 25754569-T-A P1_Y2 ***
27753134-C-T 25606987-C-T P1_Y2 ***
28435701-C-A 26289554-C-A P1_gr2 ***
27753130-C-T 25606983-C-T P1_Y2 ***
27753117-G-A 25606970-G-A P1_Y2 ***
27753108-C-T 25606961-C-T P1_Y2 ***
27753107-C-T 25606960-C-T P1_Y2 ***
27581322-T-A 25435175-T-A P1_Y2 ***
27576029-G-T 25429882-G-T P1_Y2 ***
27462649-C-T 25316502-C-T P1_Y2 ***
27454112-G-A 25307965-G-A P1_Y2 ***
27454109-T-A 25307962-T-A P1_Y2 ***
27438479-A-T 25292332-A-T P1_Y2 ***
20266149-G-T 18104263-G-T P5_Dst ***
28435653-G-C 26289506-G-C P1_gr2 ***
28435718-G-A 26289571-G-A P1_gr2 ***
58913103-G-T 56677768-C-A ***
58847879-C-T 56742992-G-A ***
58913100-T-C 56677771-A-G ***
58913072-C-T 56677799-G-A ***
58909155-C-A 56681716-G-T ***
58890357-A-T 56700514-T-A ***
58884764-C-T 56706107-G-A ***
58883987-A-C 56706884-T-G ***
58883983-G-C 56706888-C-G ***
58883977-C-G 56706894-G-C ***
58883973-T-C 56706898-A-G ***
58883969-A-T 56706902-T-A ***
58883961-T-A 56706910-A-T ***
58844356-C-A 56746515-G-T ***
28435726-C-T 26289579-C-T P1_gr2 ***
58833827-C-T 56757044-G-A ***
58819857-A-C 56771014-T-G ***
58819844-T-A 56771027-A-T ***
58819828-T-C 56771043-A-G ***
28818905-A-T 26672758-A-T ***
28804461-G-A 26658314-G-A ***
28750930-T-A 26604783-T-A ***
28491409-G-A 26345262-G-A ***
28491408-T-A 26345261-T-A ***
28491406-C-A 26345259-C-A ***
28454320-A-G 26308173-A-G P1_gr2 ***
20292339-A-G 18130453-A-G P5_Dst ***
19958079-G-T 17846199-G-T P5_Prx ***
20262941-G-A 18101055-G-A P5_Dst ***
17926560-G-AAA 15814680-G-AAA ***
13463430-C-A 11307754-C-A ***
13463400-T-A 11307724-T-A ***
13552721-C-T 11397045-C-T ***
20542037-C-T 18380151-C-T P5_Dst ***
13530684-A-T 11375008-A-T ***
13529209-T-A 11373533-T-A Z11553 ***
13292230-C-T 11136554-C-T ***
5588617-C-A 5720576-C-A ***
3481527-C-A 3613486-C-A 12×A***
22503118-G-T 20341232-G-T DYZ19 ***
24485692-G-GTTTTTTTTTTTTTTT 22339545-G-GTTTTTTTTTTTTTTT 13×TTATT***
58907254-A-C 56683617-T-G ***
22273608-G-C 20111722-G-C DYZ19 ***
13319707-C-T 11164031-C-T ***
22703626-GAAAGAAAG-AAAAAAAAA 20541740-GAAAGAAAG-AAAAAAAAA ***
58844027-T-TTCCATTCCA 56746842-A-AATGGAATGG ***
15885016-A-T 13773136-A-T ***
58884736-T-A 56706135-A-T ***
22234713-T-G 20072827-T-G DYZ19 ***
13579546-AAAAAAAAACAGAAAC-A 11423870-AAAAAAAAACAGAAAC-A ***
13140072-TCGAGTGCGTGTGATTCCATTAAATCA-T 10629558-TCGAGTGCGTGTGATTCCATTAAATCA-T ***
28491404-C-A 26345257-C-A ***
58882303-G-A 56708568-C-T ***
58907255-A-G 56683616-T-C ***
13126006-A-T 10615492-A-T ***
58916506-C-T 56674365-G-A ***
9921840-C-T 10084231-C-T ***
13465369-C-A 11309693-C-A ***
13105416-A-T 10594902-A-T ***
13468534-T-A 11312858-T-A ***
18970395-C-T 16858515-C-T ***
13105422-C-T 10594908-C-T ***
13105423-A-T 10594909-A-T ***
2888701-G-A 3020660-G-A BY21821 ***
22251718-T-C 20089832-T-C DYZ19 ***
13481444-T-A 11325768-T-A ***
58844632-A-C 56746239-T-G ***
13465489-G-C 11309813-G-C ***
58908615-A-T 56682256-T-A ***
13470764-C-G 11315088-C-G ***
13654575-CTGGA-GTGGC 11498899-CTGGA-GTGGC ***
58844837-TTTCA-ATTCC 56746030-TGAAA-GGAAT ***
13140091-TTAAA-T 10629577-TTAAA-T ***
25207667-C-A 23061520-C-A P2_r1 ***
25207659-T-A 23061512-T-A P2_r1 ***
22231941-A-T 20070055-A-T DYZ19 ***
22359820-C-T 20197934-C-T DYZ19 ***
3477851-G-GGTGT 3609810-G-GGTGT 17×GT***
23192199-G-T 21030313-G-T ***
14613459-CTTTTTTTTTTTTTT-C 12501657-CTTTTTTTTTTTTTT-C 26×T***
22352624-GCAGA-TTAGT 20190738-GCAGA-TTAGT DYZ19 ***
58913090-T-A 56677781-A-T ***
20368175-G-A 18206289-G-A P5_Dst ***
13635945-TG-T 11480269-TG-T ***
58857159-G-C 56733712-C-G ***
20541527-T-A 18379641-T-A P5_Dst ***
20541524-A-G 18379638-A-G P5_Dst ***
20368243-G-C 18206357-G-C P5_Dst ***
20368200-A-T 18206314-A-T P5_Dst ***
20368191-A-T 18206305-A-T P5_Dst ***
20368187-A-C 18206301-A-C P5_Dst ***
20368186-T-G 18206300-T-G P5_Dst ***
20368177-T-C 18206291-T-C P5_Dst ***
20368174-G-A 18206288-G-A P5_Dst ***
25323141-T-C 23176994-T-C FGC474 P2_r1 ***
20368170-G-A 18206284-G-A P5_Dst ***
20368169-T-C 18206283-T-C P5_Dst ***
20368166-C-A 18206280-C-A P5_Dst ***
20368163-T-A 18206277-T-A P5_Dst ***
20368162-A-G 18206276-A-G P5_Dst ***
28802746-T-A 26656599-T-A ***
22360419-G-A 20198533-G-A DYZ19 ***
58913063-T-C 56677808-A-G ***
13514085-A-G 11358409-A-G ***
22366464-C-T 20204578-C-T DYZ19 ***
20541578-T-C 18379692-T-C P5_Dst ***
22342748-A-C 20180862-A-C DYZ19 ***
20541583-T-C 18379697-T-C P5_Dst ***
22366619-C-T 20204733-C-T DYZ19 ***
20009310-T-A 17897430-T-A P5_Prx ***
9559510-G-A 9721901-G-A IR3_Prx ***
4778194-G-A 4910153-G-A ***
13496777-TGAAG-CGAAA 11341101-TGAAG-CGAAA ***
22297389-T-G 20135503-T-G DYZ19 ***
19646345-G-A 17534465-G-A P5_Prx ***
22367929-C-T 20206043-C-T DYZ19 ***
59007959-C-CAAAAAAAAA 56861812-C-CAAAAAAAAA 26×A***
22366628-C-G 20204742-C-G DYZ19 ***
22366624-A-T 20204738-A-T DYZ19 ***
13311487-C-T 11155811-C-T ***
8660569-G-A 8792528-G-A ***
22359782-G-T 20197896-G-T DYZ19 ***
13728272-C-A 11572596-C-A ***
13292702-C-T 11137026-C-T ***
22361163-G-A 20199277-G-A DYZ19 ***
58858705-G-T 56732166-C-A ***
58844633-T-C 56746238-A-G ***
20368176-G-A 18206290-G-A P5_Dst ***
13473447-C-A 11317771-C-A ***
13223513-G-A 11067837-G-A ***
17477484-G-A 15365604-G-A 14×A***
19025727-CGG-TGT 16913847-CGG-TGT ***
22332781-G-T 20170895-G-T DYZ19 ***
2950254-C-T 3082213-C-T ***
20262923-A-G 18101037-A-G P5_Dst ***
15214217-T-C 13102303-T-C ***
16996715-G-A 14884835-G-A ***
16602714-C-T 14490834-C-T ***
16313417-A-G 14201537-A-G ***
16097369-T-A 13985489-T-A ***
16097364-T-A 13985484-T-A ***
15888068-G-C 13776188-G-C ***
15807089-A-T 13695209-A-T ***
15640409-T-G 13528529-T-G ***
15638673-G-A 13526793-G-A ***
15363916-C-A 13252036-C-A ***
14802974-A-G 12691045-A-G ***
17402481-T-A 15290601-T-A ***
14733804-T-C 12621872-T-C ***
14625850-G-A 12514119-G-A ***
14625848-G-A 12514117-G-A ***
14625824-A-T 12514092-A-T ***
14491217-G-C 12370486-A-C ***
14431598-G-A 12310871-G-A ***
14286910-A-C 12166204-A-C ***
14133646-G-A 12012940-G-A ***
13743218-A-T 11587542-A-T ***
13743213-A-T 11587537-A-T ***
17402473-A-T 15290593-A-T 9×T***
17543757-G-T 15431877-G-T ***
13743206-A-G 11587530-A-G ***
19701407-C-A 17589527-C-A P5_Prx ***
20262905-G-A 18101019-G-A P5_Dst ***
20262894-T-A 18101008-T-A P5_Dst ***
20040615-G-A 17928735-G-A P5_Prx ***
20009309-C-A 17897429-C-A P5_Prx ***
20009290-G-A 17897410-G-A P5_Prx ***
13734106-G-A 11578430-G-A ***
19937307-A-C 17825427-A-C P5_Prx ***
19894071-T-G 17782191-T-G P5_Prx ***
19894062-C-A 17782182-C-A P5_Prx ***
19894006-T-G 17782126-T-G P5_Prx ***
19681992-A-T 17570112-A-T P5_Prx ***
17543778-G-A 15431898-G-A ***
19681970-G-A 17570090-G-A P5_Prx ***
19578967-A-T 17467087-A-T P5_Prx ***
19578953-T-A 17467073-T-A P5_Prx ***
19304825-G-T 17192945-G-T ***
18510981-G-T 16399101-G-T P6_Dst ***
18296389-T-A 16184509-T-A P6_Prx ***
18197648-G-T 16085768-G-T ***
18042682-A-T 15930802-A-T ***
18042566-C-T 15930686-C-T ***
17994954-C-A 15883074-C-A P7_Prx ***
17835064-G-C 15723184-G-C ***
13743208-C-T 11587532-C-T ***
13743193-T-C 11587517-T-C ***
3170617-C-A 3302576-C-A ***
7299242-G-T 7431201-G-T ***
10025037-A-C 10187428-A-C ***
9784671-G-T 9947062-G-T ***
9559509-T-A 9721900-T-A IR3_Prx ***
9529076-A-G 9691467-A-G ***
9432570-G-A 9594961-G-A ***
9302727-C-G 9465118-C-G ***
9216268-A-G 9378659-A-G ***
8137262-A-G 8269221-A-G ***
8007771-C-T 8139730-C-T ***
7536042-C-A 7668001-C-A 28×A***
6699046-G-T 6831005-G-T ***
13255769-G-A 11100093-G-A ***
6493940-T-C 6625899-T-C ***
6392247-T-A 6524206-T-A ***
6328301-A-T 6460260-A-T IR3_Dst ***
6175208-G-A 6307167-G-A IR3_Dst ***
5105922-C-A 5237881-C-A ***
4761062-A-G 4893021-A-G ***
4621674-C-A 4753633-C-A ***
4289724-C-T 4421683-C-T ***
4098452-C-T 4230411-C-T ***
3315648-A-G 3447607-A-G ***
13246543-A-G 11090867-A-G ***
13255772-C-T 11100096-C-T ***
13740747-G-T 11585071-G-T ***
13476008-G-T 11320332-G-T ***
13740726-T-A 11585050-T-A ***
13734626-G-A 11578950-G-A ***
13728302-C-T 11572626-C-T ***
13724949-G-T 11569273-G-T ***
13716487-A-G 11560811-A-G ***
13710273-G-A 11554597-G-A ***
13571913-C-T 11416237-C-T ***
13526326-C-T 11370650-C-T ***
13501212-A-G 11345536-A-G FGC82890 ***
13476360-T-A 11320684-T-A ***
13473632-A-T 11317956-A-T ***
13292617-A-C 11136941-A-C ***
13473585-A-T 11317909-A-T ***
13473574-G-A 11317898-G-A ***
13465618-G-A 11309942-G-A ***
13461638-T-A 11305962-T-A ***
13375563-A-G 11219887-A-G ***
13340813-T-C 11185137-T-C ***
13340809-A-T 11185133-A-T ***
13333074-C-A 11177398-C-A ***
13329321-A-G 11173645-A-G ***
13319725-A-G 11164049-A-G ***
13292640-G-A 11136964-G-A ***
58974056-C-CATTAA 56827909-C-CATTAA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 1ZRQD*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs84
Variant counts last updated 2019-07-19 22:03:22.

* BED data not available. Using default values.


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