Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S691 > S695 > FGC19633 > FGC32575 > BY11747 > FGC32580 > FGC32579

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
VSUNH
19238097-T-C 17126217-T-C FGC50074 YY+
18069195-C-T 15957315-C-T FGC50073 YY+
23795277-T-C 21633391-T-C FGC50075 Y+
3858105-G-C 3990064-G-C FGC50068 +
5070708-C-T 5202667-C-T FGC50069 +
8062347-G-T 8194306-G-T FGC50071 Y*
28746127-A-G 26599980-A-G FGC50076 Y*
24381121-C-A 22234974-C-A **
2750728-C-A 2882687-C-A **
28743261-CAATA-C 26597114-CAATA-C 5×AATA**
28489670-T-C 26343523-T-C **
18425345-T-A 16313465-T-A P6_Gap **
28544874-G-A 26398727-G-A **
7897676-C-T 8029635-C-T **
21975488-G-C 19813602-G-C **
7897671-A-G 8029630-A-G **
19125688-C-T 17013808-C-T **
19125681-A-C 17013801-A-C **
7713324-A-G 7845283-A-G **
21833991-G-T 19672105-G-T **
6056024-A-G 6187983-A-G **
13373496-C-G 11217820-C-G **
21495920-T-C 19334034-T-C **
13500077-C-G 11344401-C-G **
3606812-G-A 3738771-G-A **
26110416-G-A 23964269-G-A P1_Y1 **
18141280-A-T 16029400-A-T **
15952097-A-G 13840217-A-G **
18141213-T-G 16029333-T-G **
4326067-C-T 4458026-C-T **
14880259-G-C 12768329-G-C **
20712287-TACACAC-T 18550401-TACACAC-T P4_Prx 16×AC**
19371753-T-TAC 17259873-T-TAC 9×AC**
13500074-C-A 11344398-C-A **
21824029-A-G 19662143-A-G ***
21608116-A-G 19446230-A-G ***
23005850-G-T 20843964-G-T ***
23003750-T-A 20841864-T-A ***
21846428-T-A 19684542-T-A ***
21569968-A-G 19408082-A-G ***
21501378-G-A 19339492-G-A ***
22962036-G-T 20800150-G-T ***
22873444-G-T 20711558-G-T 8×A***
22873415-C-A 20711529-C-A ***
22262438-T-A 20100552-T-A DYZ19 ***
22873432-G-A 20711546-G-A ***
22713788-G-A 20551902-G-A ***
22360260-G-A 20198374-G-A DYZ19 ***
22873411-A-T 20711525-A-T ***
22360273-T-G 20198387-T-G DYZ19 ***
22365110-C-G 20203224-C-G DYZ19 ***
22873409-A-T 20711523-A-T ***
22365202-T-A 20203316-T-A DYZ19 ***
22873400-T-C 20711514-T-C ***
22365217-T-C 20203331-T-C DYZ19 ***
21480961-A-G 19319075-A-G ***
22366165-C-A 20204279-C-A DYZ19 ***
22490034-T-C 20328148-T-C DYZ19 ***
22534946-T-C 20373060-T-C ***
22365222-G-T 20203336-G-T DYZ19 ***
19206758-A-G 17094878-A-G ***
21435377-G-C 19273491-G-C ***
15588900-C-A 13477020-C-A ***
17030325-G-C 14918445-G-C ***
17002373-T-C 14890493-T-C ***
16786170-A-G 14674290-A-G ***
16711090-T-G 14599210-T-G ***
16594407-A-G 14482527-A-G ***
16528577-G-C 14416697-G-C PF5186 ***
16077626-A-G 13965746-A-G ***
15794976-T-G 13683096-T-G ***
15513524-G-A 13401644-G-A ***
17142150-A-G 15030270-A-G ***
15499376-T-A 13387496-T-A ***
15439984-G-A 13328104-G-A ***
15336978-A-G 13225096-A-G ***
15243339-G-A 13131425-G-A ***
15243284-G-C 13131370-G-C ***
15163524-T-G 13051610-T-G ***
15163519-C-A 13051605-C-A ***
15147196-G-A 13035283-G-A ***
17110091-C-A 14998211-C-A ***
17269879-T-G 15157999-T-G ***
21306365-G-T 19144479-G-T ***
19159945-G-A 17048065-G-A ***
21077229-T-G 18915343-T-G ***
20909000-G-T 18747114-G-T P4_Dst ***
20367148-T-C 18205262-T-C P5_Dst ***
19477529-A-G 17365649-A-G ***
19426887-A-G 17315007-A-G ***
19402103-T-G 17290223-T-G ***
23089567-A-G 20927681-A-G ***
19189700-G-A 17077820-G-A BY127081 ***
19029927-T-G 16918047-T-G ***
17349357-C-T 15237477-C-T ***
18976793-A-T 16864913-A-T Y103227 ***
18624997-T-C 16513117-T-C ***
18517444-T-C 16405564-T-C P6_Dst ***
18205115-C-A 16093235-C-A ***
18196104-G-C 16084224-G-C ***
18119800-G-C 16007920-G-C ***
18085094-C-A 15973214-C-A ***
17429297-T-C 15317417-T-C ***
23078913-T-C 20917027-T-C ***
27127737-T-C 24981590-T-C P1_g3 ***
23099920-G-A 20938034-G-A ***
5795860-CTT-C 5927819-CTT-C 18×T***
13253999-G-GT 11098323-G-GT ***
13141799-C-CATTCG 10631285-C-CATTCG ***
8278990-CTG-C 8410949-CTG-C ***
7373236-CTTT-C 7505195-CTTT-C 29×T***
6792627-TCA-T 6924586-TCA-T ***
6597359-AAAAAAAAAA-C 6729318-AAAAAAAAAA-C ***
6092947-GCTTTTTT-G 6224906-GCTTTTTT-G ***
6091720-ATTTTTTTT-A 6223679-ATTTTTTTT-A 28×T***
5557233-AG-CA 5689192-AG-CA ***
13468046-TGT-AGG 11312370-TGT-AGG ***
5387429-TCA-T 5519388-TCA-T ***
4983777-C-CTT 5115736-C-CTT 22×T***
4705290-GA-G 4837249-GA-G 10×A***
4389403-CCAA-C 4521362-CCAA-C ***
4067507-TC-T 4199466-TC-T ***
3679659-A-AAAATAAAT 3811618-A-AAAATAAAT 10×AAAT***
22360179-TG-T 20198293-TG-T DYZ19 ***
17828086-GT-G 15716206-GT-G 12×T***
13451861-CATCAC-AAGTAT 11296185-CATCAC-AAGTAT ***
13478285-GGGCGCCT-CGGAGCCA 11322609-GGGCGCCT-CGGAGCCA ***
58988136-A-G 56841989-A-G ***
58912945-GGCG-TGCT 56677923-CGCC-AGCA ***
58988121-ATGAAACATTT-TTGGAACTCTA 56841974-ATGAAACATTT-TTGGAACTCTA ***
58988101-CTGCACTGCTCAT-TTCCGCTGATCAC 56841954-CTGCACTGCTCAT-TTCCGCTGATCAC ***
58988083-GGGC-AGGT 56841936-GGGC-AGGT ***
58986475-CATCA-AATCC 56840328-CATCA-AATCC ***
58979270-CTCCATC-TTCCATT 56833123-CTCCATC-TTCCATT ***
58978541-GTTTTGAC-TTTTCGAA 56832394-GTTTTGAC-TTTTCGAA ***
58977383-ATCCACTGA-CTCTACTCC 56831236-ATCCACTGA-CTCTACTCC ***
58977368-CTGT-TTCC 56831221-CTGT-TTCC ***
58869903-TTA-GTG 56720966-TAA-CAC ***
13570555-AGAC-TGAT 11414879-AGAC-TGAT ***
58854602-AAAGTTCATTACATTCTAATACATTCCATTCCATTC-A 56736233-CGAATGGAATGGAATGTATTAGAATGTAATGAACTT-C ***
28798046-TGGAGA-T 26651899-TGGAGA-T ***
23802080-CTCAA-C 21640194-CTCAA-C ***
22873409-ATATACC-TTTTACA 20711523-ATATACC-TTTTACA ***
22264270-CCTC-GCTG 20102384-CCTC-GCTG DYZ19 ***
22164349-GGT-G 20002463-GGT-G ***
19622110-G-GCACACA 17510230-G-GCACACA P5_Prx 23×CA***
15420131-TC-T 13308251-TC-T ***
13728657-GTGG-TTGT 11572981-GTGG-TTGT ***
3086543-GCA-G 3218502-GCA-G ***
58988131-T-A 56841984-T-A ***
23260568-T-G 21098682-T-G ***
26501094-G-A 24354947-G-A P1_Y1 ***
27583051-A-T 25436904-A-T P1_Y2 ***
27583050-G-T 25436903-G-T P1_Y2 ***
27232157-T-C 25086010-T-C P1_g3 ***
27087872-G-A 24941725-G-A P1_r4 ***
26637952-A-T 24491805-A-T P1_g2 ***
26637949-A-C 24491802-A-C P1_g2 ***
26564007-A-G 24417860-A-G P1_g2 ***
26501148-T-C 24355001-T-C P1_Y1 ***
26122157-T-C 23976010-T-C P1_Y1 ***
28033977-C-A 25887830-C-A P1_Y2 ***
25114600-A-C 22968453-A-C g1 ***
24922544-C-G 22776397-C-G g1 ***
24494450-T-C 22348303-T-C ***
24447121-G-A 22300974-G-A ***
15147190-C-T 13035277-C-T ***
24144037-A-G 21997890-A-G P3_b1 ***
23833091-C-A 21671205-C-A ***
23426834-G-C 21264948-G-C ***
27596073-C-A 25449926-C-A P1_Y2 ***
28416434-T-C 26270287-T-C P1_gr2 ***
58988128-A-T 56841981-A-T ***
58910506-G-C 56680365-C-G ***
58988121-A-T 56841974-A-T ***
58988113-T-C 56841966-T-C ***
58988105-A-G 56841958-A-G ***
58988103-G-C 56841956-G-C ***
58988101-C-T 56841954-C-T ***
58988092-C-T 56841945-C-T ***
58988086-C-T 56841939-C-T ***
58986463-C-A 56840316-C-A ***
58908886-A-T 56681985-T-A ***
28544028-T-A 26397881-T-A ***
58892320-G-T 56698551-C-A ***
58892286-G-T 56698585-C-A ***
58888694-C-G 56702177-G-C ***
58880318-C-A 56710553-G-T ***
58862423-C-A 56728448-G-T ***
58854558-C-A 56736313-G-T ***
58838882-T-C 56751989-A-G ***
58832977-C-A 56757894-G-T ***
58826927-T-A 56763944-A-T ***
15147191-C-T 13035278-C-T ***
14488281-T-G 12367550-T-G ***
15147175-G-A 13035262-G-A ***
58882509-A-G 56708362-T-C ***
22757565-T-C 20595679-T-C ***
13468416-TC-CT 11312740-TC-CT ***
13468411-A-G 11312735-A-G ***
58908834-C-A 56682037-G-T ***
58979369-ATG-CTT 56833222-ATG-CTT ***
58979340-CTC-TTA 56833193-CTC-TTA ***
13451872-CCAG-TCAT 11296196-CCAG-TCAT ***
58882523-C-A 56708348-G-T ***
58882444-T-G 56708427-A-C ***
5721422-T-C 5853381-T-C ***
58882422-T-C 56708449-A-G ***
22366568-C-G 20204682-C-G DYZ19 ***
7000909-G-T 7132868-G-T ***
13468038-A-G 11312362-A-G ***
5523917-CTTT-C 5655876-CTTT-C 24×T***
58973695-TTTCCAT-ATGCGAG 56827548-TTTCCAT-ATGCGAG ***
22361071-C-A 20199185-C-A DYZ19 ***
22364455-A-C 20202569-A-C DYZ19 ***
16344426-A-T 14232546-A-T ***
22330027-T-C 20168141-T-C DYZ19 ***
6198235-A-G 6330194-A-G IR3_Dst ***
2810501-G-A 2942460-G-A BY192944 ***
3086728-G-A 3218687-G-A ***
3063726-T-A 3195685-T-A 13×A***
3030464-C-G 3162423-C-G ***
3020339-T-A 3152298-T-A ***
2960304-T-C 3092263-T-C ***
2916992-T-A 3048951-T-A ***
2888861-A-T 3020820-A-T ***
2810505-C-A 2942464-C-A ***
2810483-T-C 2942442-T-C ***
22330025-A-T 20168139-A-T DYZ19 ***
2810469-G-A 2942428-G-A ***
2783735-A-C 2915694-A-C ***
2678764-T-C 2810723-T-C ***
58988124-A-G 56841977-A-G ***
58988109-C-A 56841962-C-A ***
22330026-G-A 20168140-G-A DYZ19 ***
13287961-T-C 11132285-T-C ***
15047498-C-T 12935589-C-T F19498 ***
6725184-T-C 6857143-T-C ***
13641480-CCT-AC 11485804-CCT-AC ***
3220096-T-C 3352055-T-C ***
19138349-CTA-C 17026469-CTA-C 11×TA***
13623180-C-T 11467504-C-T ***
13448450-G-GTTCCA 11292774-G-GTTCCA ***
5178062-CAA-C 5310021-CAA-C 20×A***
22330022-T-C 20168136-T-C DYZ19 ***
22226454-T-G 20064568-T-G DYZ19 ***
26501077-G-A 24354930-G-A P1_Y1 ***
16352456-C-CA 14240576-C-CA 21×A***
28539164-G-A 26393017-G-A M4646 ***
16739069-G-A 14627189-G-A 17×A***
19312772-T-G 17200892-T-G ***
22364435-G-C 20202549-G-C DYZ19 ***
13500110-CA-C 11344434-CA-C 16×A***
58882393-A-C 56708478-T-G ***
22330021-A-C 20168135-A-C DYZ19 ***
58843261-C-A 56747610-G-T ***
58890316-C-A 56700555-G-T ***
58827069-G-C 56763802-C-G ***
58854527-T-C 56736344-A-G ***
15122164-T-G 13010251-T-G ***
20824504-GTA-G 18662618-GTA-G P4_Gap ***
58912771-T-C 56678100-A-G ***
59014206-A-C 56868059-A-C ***
58912757-C-T 56678114-G-A ***
58908853-T-C 56682018-A-G ***
22226442-T-A 20064556-T-A DYZ19 ***
22262586-T-G 20100700-T-G DYZ19 ***
3641037-C-CTTTCT 3772996-C-CTTTCT ***
58979347-TCT-CCA 56833200-TCT-CCA ***
59014251-A-G 56868104-A-G ***
59014226-C-T 56868079-C-T ***
58991859-C-T 56845712-C-T ***
28539173-CCA-C 26393026-CCA-C ***
24447123-A-G 22300976-A-G 6×AAAG***
22360187-C-T 20198301-C-T BY160831 DYZ19 ***
17278277-A-C 15166397-A-C Z12175 ***
13500074-CTGC-ATGG 11344398-CTGC-ATGG ***
58993334-AGG-GGT 56847187-AGG-GGT ***
4817665-A-G 4949624-A-G ***
24573423-CTT-C 22427276-CTT-C P3_t2 21×T***
13446527-CTCCATTCCATTCCAT-C 11290851-CTCCATTCCATTCCAT-C 16×TCCAT***
3089452-C-T 3221411-C-T ***
3237980-A-G 3369939-A-G ***
15078158-A-G 12966248-A-G ***
8739202-A-G 8871161-A-G ***
10050390-A-G 10212781-A-G ***
9990501-A-G 10152892-A-G ***
9911213-G-T 10073604-G-T ***
9541453-G-C 9703844-G-C IR3_Prx ***
9191060-G-A 9353451-G-A ***
9069271-T-A 9231662-T-A ***
9063014-A-G 9225405-A-G ***
9043976-T-C 9206367-T-C ***
8282351-T-A 8414310-T-A ***
13337052-T-G 11181376-T-G ***
8016961-T-G 8148920-T-G ***
7981879-T-A 8113838-T-A ***
7897666-A-C 8029625-A-C ***
7897659-G-A 8029618-G-A ***
7774610-A-T 7906569-A-T ***
7666892-A-G 7798851-A-G ***
7500468-C-A 7632427-C-A IR1_L ***
7451271-T-A 7583230-T-A IR1_L ***
13140175-C-A 10629661-C-A ***
13362443-T-A 11206767-T-A ***
7303501-A-G 7435460-A-G ***
14290767-T-C 12170061-T-C ***
14955552-A-G 12843627-A-G ***
14784873-T-A 12672943-T-A ***
14609592-C-T 12497794-C-T ***
14488297-A-T 12367566-A-T ***
14488288-A-G 12367557-A-G ***
14488287-C-T 12367556-C-T ***
58977383-A-C 56831236-A-C ***
14365712-G-T 12245007-G-T ***
14111710-G-T 11991004-G-T ***
13416096-A-G 11260420-A-G ***
14096488-G-A 11975782-G-A NGC8 ***
14055961-T-C 11935255-T-C ***
14021805-G-A 11901099-G-A ***
13726453-T-C 11570777-T-C ***
13536702-A-G 11381026-A-G ***
13501546-C-G 11345870-C-G ***
13468891-C-T 11313215-C-T ***
13445685-G-C 11290009-G-C ***
7378439-T-G 7510398-T-G ***
7281025-C-T 7412984-C-T ***
3270912-A-G 3402871-A-G ***
3842731-T-A 3974690-T-A ***
5021697-C-A 5153656-C-A ***
4878247-A-C 5010206-A-C ***
4878195-C-A 5010154-C-A ***
4842949-C-T 4974908-C-T ***
4547867-T-G 4679826-T-G ***
4487159-C-T 4619118-C-T ***
4190635-T-C 4322594-T-C ***
4045998-C-G 4177957-C-G ***
3799867-A-G 3931826-A-G ***
5134465-C-A 5266424-C-A ***
3787100-A-G 3919059-A-G ***
3729753-G-A 3861712-G-A ***
3675859-T-C 3807818-T-C ***
3631637-A-T 3763596-A-T ***
3571851-C-A 3703810-C-A ***
3457274-C-T 3589233-C-T ***
3457254-A-G 3589213-A-G ***
3370579-T-G 3502538-T-G ***
5086062-A-G 5218021-A-G ***
5200203-C-T 5332162-C-T ***
6944945-A-C 7076904-A-C ***
5756745-A-G 5888704-A-G ***
6858615-T-G 6990574-T-G ***
6816396-A-C 6948355-A-C ***
6794663-T-G 6926622-T-G ***
6728952-T-C 6860911-T-C ***
6648616-T-A 6780575-T-A ***
6225977-C-T 6357936-C-T IR3_Dst ***
6056501-C-A 6188460-C-A ***
5772201-A-G 5904160-A-G ***
5702717-C-A 5834676-C-A ***
5233532-A-G 5365491-A-G ***
5586218-A-C 5718177-A-C ***
5571165-A-G 5703124-A-G ***
5566117-G-T 5698076-G-T ***
5557227-A-T 5689186-A-T ***
5557218-G-A 5689177-G-A ***
5557214-G-T 5689173-G-T ***
5445722-T-C 5577681-T-C ***
5430344-A-T 5562303-A-T ***
58988149-ATA-GTG 56842002-ATA-GTG ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: VSUNH16751514100173358163078
Used in age calculations16751514100173358163078
Counts of SNPs34
Variant counts last updated 2019-06-16 22:24:13.



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