Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > ZS312 > Z262 > M167 > Z264 > Z205 > ~22224168-A-C > Z206/S235 > Z208/S362 > Z207/S251 > CTS9762 > CTS4299

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
PPT8C
17756285-G-T 15644405-G-T FGC45931 YY+
14605801-T-C 12494003-T-C FGC45923 Y+
5323524-A-G 5455483-A-G FGC45913 +
5329648-T-G 5461607-T-G FGC45914 +
5991391-G-A 6123350-G-A FGC45915 +
24360685-G-T 22214538-G-T FGC45942 +
24360484-C-A 22214337-C-A FGC45941 +
23599328-G-C 21437442-G-C FGC45940 YY+
7148554-A-G 7280513-A-G FGC45918 Y+
22963098-C-T 20801212-C-T FGC45939 YY+
9520207-T-C 9682598-T-C FGC45919 +
21169226-C-T 19007340-C-T FGC45937 YY+
21145245-A-G 18983359-A-G FGC45936 YY+
22562719-A-C 20400833-A-C FGC45938 YY+
14786275-C-G 12674345-C-G FGC45924 YY+
15676177-C-T 13564297-C-T FGC45927 Y+
15112192-T-C 13000279-T-C FGC45926 YY+
16437054-G-A 14325174-G-A FGC45930 YY+
13678643-C-G 11522967-C-G FGC45922 +
16329627-A-G 14217747-A-G FGC45929 YY+
14974124-T-C 12862199-T-C FGC45925 YY+
19232902-T-C 17121022-T-C FGC45934 YY+
16317582-T-G 14205702-T-G FGC45928 Y+
19071428-C-A 16959548-C-A FGC45933 Y+
4387205-A-G 4519164-A-G FGC45911 *
5091954-A-G 5223913-A-G FGC45912 *
2744345-G-GT 2876304-G-GT *
3169322-G-GA 3301281-G-GA *
18382480-G-T 16270600-G-T FGC45932 P6_Gap *
6575123-T-G 6707082-T-G FGC45917 *
6108075-G-A 6240034-G-A FGC45916 *
10083407-T-C 10245798-T-C FGC45920 *
13358152-A-T 11202476-A-T FGC45921 *
19270910-A-G 17159030-A-G FGC45935 YY*
19062844-T-C 16950964-T-C **
21891183-T-C 19729297-T-C **
27022299-A-T 24876152-A-T P1_r4 **
27022298-A-T 24876151-A-T P1_r4 **
22248423-C-A 20086537-C-A DYZ19 **
2771503-C-T 2903462-C-T **
26834796-T-G 24688649-T-G P1_g2 **
4419279-T-C 4551238-T-C **
4419280-G-T 4551239-G-T **
4753429-A-G 4885388-A-G **
5443183-A-G 5575142-A-G **
22222797-T-A 20060911-T-A DYZ19 **
59017510-G-T 56871363-G-T **
5486143-G-A 5618102-G-A **
22235449-A-T 20073563-A-T DYZ19 **
5577263-A-C 5709222-A-C **
5577269-A-C 5709228-A-C **
5679049-C-T 5811008-C-T **
13350673-G-A 11194997-G-A **
9428477-C-T 9590868-C-T **
7984395-A-G 8116354-A-G **
25592861-A-ACT 23446714-A-ACT P1_gr1 20×CT**
22235437-G-A 20073551-G-A FGC81582 DYZ19 **
7382317-C-CAAACA 7514276-C-CAAACA 5×AAACA**
24456472-T-TCACA 22310325-T-TCACA 14×CA**
13494335-A-T 11338659-A-T **
13494487-C-A 11338811-C-A **
58876658-A-C 56714213-T-G **
59012939-A-G 56866792-A-G **
14082047-TTCTA-T 11961341-TTCTA-T 11×TCTA**
59012923-A-G 56866776-A-G **
13494460-A-T 11338784-A-T **
59013006-C-T 56866859-C-T **
9697146-TTGTG-T 9859537-TTGTG-T IR3_Prx 18×TG**
3483637-GACAC-G 3615596-GACAC-G 15×AC**
17678621-CTTTTTT-C 15566741-CTTTTTT-C 26×T**
22341963-C-A 20180077-C-A DYZ19 ***
58982219-A-C 56836072-A-C ***
22481739-A-T 20319853-A-T DYZ19 ***
22341945-C-T 20180059-C-T DYZ19 ***
22337507-T-C 20175621-T-C DYZ19 ***
22333466-G-C 20171580-G-C DYZ19 ***
22325163-T-G 20163277-T-G DYZ19 ***
22297294-C-T 20135408-C-T DYZ19 ***
22284755-A-G 20122869-A-G DYZ19 ***
22250261-A-C 20088375-A-C DYZ19 ***
22235469-T-A 20073583-T-A DYZ19 ***
22481722-T-C 20319836-T-C DYZ19 ***
22504794-C-A 20342908-C-A DYZ19 ***
18290814-CCAAAA-C 16178934-CCAAAA-C P6_Prx ***
22482903-C-G 20321017-C-G DYZ19 ***
22502035-A-C 20340149-A-C DYZ19 ***
17637638-AACACACAC-A 15525758-AACACACAC-A 21×AC***
19213990-GGCAGGTGCCT-G 17102110-GGCAGGTGCCT-G ***
22504809-T-A 20342923-T-A DYZ19 ***
16627720-ATATG-A 14515840-ATATG-A ***
22551147-A-C 20389261-A-C ***
15866268-CAAAAAAAAAAAAAAAAAA-C 13754388-CAAAAAAAAAAAAAAAAAA-C 43×A***
22636568-C-T 20474682-C-T ***
22923365-G-A 20761479-G-A BY48036 ***
14787952-ATTTT-A 12676023-ATTTT-A ***
22974082-T-G 20812196-T-G ***
13820813-GGA-CGC 11700107-GGA-CGC ***
22235468-C-T 20073582-C-T DYZ19 ***
22235463-CAACACT-TACCTTA 20073577-CAACACT-TACCTTA DYZ19 ***
22235467-A-T 20073581-A-T DYZ19 ***
58986660-TCAC-CCACAT 56840513-TCAC-CCACAT ***
58981380-ACACTGCATTC-CCATTACACTG 56835233-ACACTGCATTC-CCATTACACTG ***
58984626-GGA-TGT 56838479-GGA-TGT ***
19377133-A-G 17265253-A-G ***
58984647-AATTG-TATTT 56838500-AATTG-TATTT ***
58984729-GCCTA-TCCTT 56838582-GCCTA-TCCTT ***
58986646-TA-T 56840499-TA-T ***
58986690-GTAACCCATTT-ATAATACTTTC 56840543-GTAACCCATTT-ATAATACTTTC ***
58977570-C-CCATTA 56831423-C-CCATTA ***
18354811-A-T 16242931-A-T P6_Prx ***
18288400-A-C 16176520-A-C P6_Prx ***
58986706-CTCTG-TTCTT 56840559-CTCTG-TTCTT ***
18177923-A-C 16066043-A-C ***
18003191-T-G 15891311-T-G P7_Gap ***
59012826-AAG-CAA 56866679-AAG-CAA ***
19721408-T-C 17609528-T-C P5_Prx ***
20516634-A-C 18354748-A-C P5_Dst ***
22235463-C-T 20073577-C-T DYZ19 ***
22162562-C-G 20000676-C-G ***
20252790-GAAATAC-AAAAAAA 18090904-GAAATAC-AAAAAAA P5_Dst ***
24046468-A-G 21900321-A-G ***
22341944-TC-GT 20180058-TC-GT DYZ19 ***
22235092-A-G 20073206-A-G DYZ19 ***
22234884-G-A 20072998-G-A DYZ19 ***
22341971-AGA-TGT 20180085-AGA-TGT DYZ19 ***
23293594-GTGTGTATATA-G 21131708-GTGTGTATATA-G ***
28474964-TCA-T 26328817-TCA-T ***
21512428-G-T 19350542-G-T ***
21367884-G-T 19205998-G-T ***
21207525-T-G 19045639-T-G ***
23415340-ATATT-A 21253454-ATATT-A ***
27022297-AAA-TTT 24876150-AAA-TTT P1_r4 ***
20752427-T-G 18590541-T-G P4_Prx ***
13708475-T-TGAATG 11552799-T-TGAATG ***
13448660-A-ATGCCT 11292984-A-ATGCCT ***
13484003-AACACG-TACAAA 11328327-AACACG-TACAAA ***
28614785-T-A 26468638-T-A ***
26699173-G-T 24553026-G-T P1_g2 ***
26707109-A-C 24560962-A-C P1_g2 ***
26949231-T-G 24803084-T-G P1_r3 ***
27022297-A-T 24876150-A-T FGC3422 P1_r4 ***
27303474-T-C 25157327-T-C P1_g3 ***
27557437-T-A 25411290-T-A P1_Y2 ***
27641350-C-A 25495203-C-A P1_Y2 ***
27755993-T-G 25609846-T-G P1_Y2 ***
28018068-T-G 25871921-T-G P1_Y2 ***
28084960-A-T 25938813-A-T P1_Y2 ***
28232157-T-A 26086010-T-A P1_b4 ***
28344627-G-T 26198480-G-T P1_gr2 ***
28522751-C-T 26376604-C-T 17×T***
28589184-C-A 26443037-C-A ***
28614786-C-A 26468639-C-A ***
58986067-G-A 56839920-G-A ***
58833419-G-T 56757452-C-A ***
58838677-G-A 56752194-C-T ***
58841130-C-T 56749741-G-A ***
58843448-T-A 56747423-A-T ***
58875327-T-C 56715544-A-G ***
58903137-A-G 56687734-T-C ***
58903912-C-A 56686959-G-T ***
58903948-G-T 56686923-C-A ***
58910155-A-G 56680716-T-C ***
58977245-A-T 56831098-A-T ***
58979827-G-T 56833680-G-T ***
58982209-T-G 56836062-T-G ***
58982210-C-T 56836063-C-T ***
58982212-C-G 56836065-C-G ***
58982265-C-T 56836118-C-T ***
26574550-G-T 24428403-G-T P1_g2 ***
24101794-T-C 21955647-T-C P3_b1 ***
25025923-A-C 22879776-A-C g1 ***
24283259-C-A 22137112-C-A P3_t1 ***
13449059-GTTCCACTGCACTT-ATTCCACTC 11293383-GTTCCACTGCACTT-ATTCCACTC ***
58982217-C-T 56836070-C-T ***
13263879-CGAAA-TGAAG 11108203-CGAAA-TGAAG ***
24599985-A-C 22453838-A-C P3_t2 ***
24600670-C-A 22454523-C-A P3_t2 16×A***
7382344-A-AACAAT 7514303-A-AACAAT ***
5088451-CTTT-C 5220410-CTTT-C 27×T***
4419279-TG-CT 4551238-TG-CT ***
24686452-G-T 22540305-G-T P3_b2 ***
24745142-T-G 22598995-T-G P3_b2 ***
24893540-A-T 22747393-A-T g1 ***
24911073-T-C 22764926-T-C g1 ***
24932071-T-G 22785924-T-G g1 ***
25525085-T-G 23378938-T-G P1_gr1 ***
26565780-G-T 24419633-G-T P1_g2 ***
58986706-C-T 56840559-C-T ***
26538828-G-A 24392681-G-A P1_g2 ***
26499612-G-T 24353465-G-T P1_Y1 ***
26477807-G-C 24331660-G-C P1_Y1 ***
26444904-G-T 24298757-G-T P1_Y1 ***
26444829-G-T 24298682-G-T P1_Y1 ***
17247890-T-C 15136010-T-C ***
26325035-C-A 24178888-C-A P1_Y1 ***
25651628-T-C 23505481-T-C P1_b3 ***
59017650-G-C 56871503-G-C ***
13600979-TGA-T 11445303-TGA-T ***
26262589-T-C 24116442-T-C P1_Y1 ***
26110502-A-G 23964355-A-G P1_Y1 ***
25848216-G-T 23702069-G-T P1_b3 ***
25715596-A-G 23569449-A-G P1_b3 ***
26396868-G-T 24250721-G-T P1_Y1 ***
14308193-A-C 12187487-A-C ***
17114941-T-G 15003061-T-G BZ344 ***
13478324-C-G 11322648-C-G ***
22237266-C-T 20075380-C-T DYZ19 ***
17662050-GTGTT-G 15550170-GTGTT-G ***
8631383-CTTTTTTT-C 8763342-CTTTTTTT-C 26×T***
58908879-C-G 56681992-G-C ***
58840967-A-T 56749904-T-A ***
22501987-A-C 20340101-A-C DYZ19 ***
22297091-C-A 20135205-C-A DYZ19 ***
22503088-ATTT-TTTG 20341202-ATTT-TTTG DYZ19 ***
13272738-TT-CC 11117062-TT-CC ***
25709363-G-T 23563216-G-T P1_b3 ***
59022252-A-G 56876105-A-G ***
59016725-C-T 56870578-C-T ***
58976941-CCACTCCACTT-C 56830794-CCACTCCACTT-C ***
22274066-C-A 20112180-C-A DYZ19 ***
22274064-G-T 20112178-G-T DYZ19 ***
22341930-T-C 20180044-T-C DYZ19 ***
58912874-A-T 56677997-T-A ***
13872786-C-A 11752080-C-A ***
27127653-T-C 24981506-T-C P1_g3 ***
7223194-C-A 7355153-C-A 22×A***
9444689-C-A 9607080-C-A 14×A***
23037258-G-T 20875372-G-T ***
13478317-C-T 11322641-C-T ***
13478262-G-A 11322586-G-A ***
58980331-AGGTT-GGGCTG 56834184-AGGTT-GGGCTG ***
58891429-T-C 56699442-A-G ***
58986670-ATAG-GTAC 56840523-ATAG-GTAC ***
22341973-A-T 20180087-A-T DYZ19 ***
58973793-T-TCCATCCGATTGCATG 56827646-T-TCCATCCGATTGCATG ***
58986769-T-G 56840622-T-G ***
58986417-C-T 56840270-C-T ***
13451994-T-A 11296318-T-A ***
58980343-GTGA-TTTG 56834196-GTGA-TTTG ***
58986417-CT-TG 56840270-CT-TG ***
58838486-G-T 56752385-C-A ***
19377130-T-G 17265250-T-G CTS10293 4×GGAG***
13263872-G-A 11108196-G-A ***
13494297-C-T 11338621-C-T ***
58841096-T-C 56749775-A-G ***
22503165-AGACT-CGACA 20341279-AGACT-CGACA DYZ19 ***
15320655-AGAG-A 13208761-AGAG-A ***
22491445-T-G 20329559-T-G DYZ19 ***
58847681-T-G 56743190-A-C ***
22504690-C-A 20342804-C-A DYZ19 ***
22262664-AC-A 20100778-AC-A DYZ19 ***
13268618-GT-AC 11112942-GT-AC ***
58841093-C-T 56749778-G-A ***
28474965-CAAA-C 26328818-CAAA-C 18×A***
15477248-T-C 13365368-T-C CTS4206 ***
22366185-C-G 20204299-C-G DYZ19 ***
22235465-A-C 20073579-A-C DYZ19 ***
15799251-T-C 13687371-T-C ***
13640914-G-A 11485238-G-A ***
13450931-CATTCT-C 11295255-CATTCT-C ***
58855286-CCCATTCCATT-C 56735539-CAATGGAATGG-C 9×CCATT***
58877030-A-G 56713841-T-C ***
13277616-C-T 11121940-C-T ***
9799197-C-CTTAT 9961588-C-CTTAT 6×TTAT***
13820742-AG-A 11700036-AG-A ***
5235771-GTA-G 5367730-GTA-G ***
58841013-T-C 56749858-A-G ***
13451745-AC-GT 11296069-AC-GT ***
13484057-G-A 11328381-G-A ***
22235090-C-A 20073204-C-A DYZ19 ***
58979775-AT-CA 56833628-AT-CA ***
58974013-TTCCAT-G 56827866-TTCCAT-G ***
13820736-A-T 11700030-A-T ***
13263697-CGTC-TGTT 11108021-CGTC-TGTT ***
13494322-C-T 11338646-C-T ***
13287961-T-A 11132285-T-A ***
5474635-A-C 5606594-A-C FGC52898 ***
22435738-T-A 20273852-T-A DYZ19 ***
22341944-T-G 20180058-T-G DYZ19 ***
58976820-A-T 56830673-A-T ***
22341369-G-T 20179483-G-T DYZ19 ***
58880029-G-A 56710842-C-T ***
3349258-T-G 3481217-T-G ***
17013202-C-A 14901322-C-A ***
10042980-C-G 10205371-C-G ***
13561363-G-A 11405687-G-A ***
13480984-C-T 11325308-C-T ***
13480790-C-A 11325114-C-A ***
13480758-A-C 11325082-A-C ***
13453723-T-A 11298047-T-A ***
13350596-G-A 11194920-G-A ***
13110057-C-A 10599543-C-A ***
9990292-C-A 10152683-C-A ***
13745932-T-A 11590256-T-A ***
9976053-C-A 10138444-C-A ***
9976040-C-A 10138431-C-A ***
9912370-G-A 10074761-G-A ***
9912359-C-A 10074750-C-A ***
9782987-C-A 9945378-C-A ***
9697592-C-G 9859983-C-G IR3_Prx ***
9683810-C-A 9846201-C-A IR3_Prx ***
13701974-G-A 11546298-G-A ***
13820715-A-C 11700009-A-C ***
9605381-C-A 9767772-C-A IR3_Prx ***
15477258-T-C 13365378-T-C ***
16884862-G-A 14772982-G-A ***
16356638-T-C 14244758-T-C ***
16356636-T-A 14244756-T-A ***
15878448-C-T 13766568-C-T ***
15878442-A-C 13766562-A-C ***
15878441-A-G 13766561-A-G ***
15878436-G-A 13766556-G-A ***
15477249-G-A 13365369-G-A ***
13820807-T-C 11700101-T-C ***
15468090-C-A 13356210-C-A ***
15402591-T-A 13290711-T-A ***
14788077-A-C 12676148-A-C ***
14696039-T-A 12584105-T-A ***
14253250-G-T 12132544-G-T ***
14148032-A-C 12027326-A-C ***
13959520-A-C 11838814-A-C ***
9605452-T-A 9767843-T-A IR3_Prx ***
9533457-T-G 9695848-T-G IR3_Prx ***
3374853-A-C 3506812-A-C ***
4634604-T-A 4766563-T-A ***
4927406-C-A 5059365-C-A ***
4880799-G-A 5012758-G-A ***
4880789-T-A 5012748-T-A ***
4880782-G-A 5012741-G-A ***
4784433-C-A 4916392-C-A ***
4700725-A-C 4832684-A-C ***
4650187-A-T 4782146-A-T ***
4618501-A-C 4750460-A-C ***
4932251-G-A 5064210-G-A ***
4412241-A-G 4544200-A-G ***
4336629-T-A 4468588-T-A ***
4144000-G-T 4275959-G-T ***
4098602-T-A 4230561-T-A ***
4021271-T-A 4153230-T-A ***
3843006-G-T 3974965-G-T ***
3746039-C-A 3877998-C-A ***
4928922-A-T 5060881-A-T ***
5214282-T-G 5346241-T-G ***
9465587-C-G 9627978-C-G ***
7232710-T-G 7364669-T-G ***
9440840-G-A 9603231-G-A ***
9420178-T-C 9582569-T-C ***
9347665-G-T 9510056-G-T ***
7649182-T-G 7781141-T-G ***
7451043-T-A 7583002-T-A IR1_L 13×A***
7381277-G-A 7513236-G-A ***
7289379-G-T 7421338-G-T ***
7183904-G-T 7315863-G-T ***
5865560-T-G 5997519-T-G ***
7134895-A-C 7266854-A-C ***
7108579-T-A 7240538-T-A ***
6573598-T-C 6705557-T-C ***
6528172-C-G 6660131-C-G ***
6375478-T-G 6507437-T-G ***
6375473-T-G 6507432-T-G ***
5879944-T-A 6011903-T-A ***
59030171-AGGT-GGGGG 56884024-AGGT-GGGGG ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: PPT8C17266889102078558318821
Used in age calculations17266889102078558318821
Counts of SNPs1813
Variant counts last updated 2019-09-10 00:13:23.



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