Maher

FGC: 11R9D

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > S5488 > FGC11358 > Z17568 > L1336 > FGC11336 > FGC11312

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
11R9D
21277502-C-T 19115616-C-T FGC11351 Y+
21824415-G-A 19662529-G-A FGC11354 Y+
13921727-A-G 11801021-A-G FGC11326 YY+
13127400-C-T 10616886-C-T FGC11325 +
15369202-C-T 13257322-C-T FGC11332 Y+
15731087-C-A 13619207-C-A FGC11335 Y*
14112840-G-A 11992134-G-A FGC11328 Y*
5430726-C-T 5562685-C-T FGC11314 *
58874773-CCATTCCATTACTTTG-C 56716076-CGGAATGCAAAGTAAT-C **
28545016-C-CAAAAAAAAA 26398869-C-CAAAAAAAAA 22×A**
3863079-CA-C 3995038-CA-C 11×A**
19293770-C-CAAAAAAA 17181890-C-CAAAAAAA 29×A**
6591373-GA-G 6723332-GA-G **
22332781-G-A 20170895-G-A DYZ19 **
13537468-A-G 11381792-A-G **
21551805-A-G 19389919-A-G FT6136 **
19937284-G-GCCCC 17825404-G-GCCCC P5_Prx 13×C**
9429667-C-CAAAA 9592058-C-CAAAA 25×A**
16528185-A-C 14416305-A-C **
7554786-AACAC-A,AA 7686745-AACAC-A,AA 22×AC**
13565410-T-C 11409734-T-C **
10067037-A-G 10229428-A-G **
13423091-A-T 11267415-A-T **
13537479-T-G 11381803-T-G **
24528156-A-C 22382009-A-C P3_t2 ***
25856697-C-G 23710550-C-G P1_Y1 ***
25856698-C-A 23710551-C-A P1_Y1 ***
25856704-A-T 23710557-A-T P1_Y1 ***
25856739-T-G 23710592-T-G P1_Y1 ***
25856740-A-G 23710593-A-G P1_Y1 ***
25029480-C-A 22883333-C-A g1 ***
25856744-A-G 23710597-A-G P1_Y1 ***
25805070-C-A 23658923-C-A P1_b3 ***
25871169-C-T 23725022-C-T P1_Y1 ***
26101197-C-A 23955050-C-A P1_Y1 ***
24528154-A-C 22382007-A-C P3_t2 ***
26209274-T-A 24063127-T-A P1_Y1 ***
26209278-A-G 24063131-A-G P1_Y1 ***
25871141-T-A 23724994-T-A P1_Y1 ***
24528182-T-C 22382035-T-C P3_t2 ***
24528168-A-C 22382021-A-C P3_t2 ***
25680653-A-G 23534506-A-G P1_b3 ***
24528201-A-G 22382054-A-G P3_t2 ***
25207802-G-A 23061655-G-A P2_r1 ***
25207817-C-T 23061670-C-T P2_r1 ***
25680647-C-T 23534500-C-T P1_b3 ***
26209297-G-A 24063150-G-A P1_Y1 ***
25680648-C-T 23534501-C-T P1_b3 ***
25680673-G-C 23534526-G-C P1_b3 ***
25805063-G-A 23658916-G-A P1_b3 ***
24528183-T-C 22382036-T-C P3_t2 ***
25805046-C-A 23658899-C-A P1_b3 ***
25805047-G-A 23658900-G-A P1_b3 ***
25805048-C-A 23658901-C-A P1_b3 ***
25805049-G-A 23658902-G-A P1_b3 ***
24907781-T-A 22761634-T-A g1 22×A***
28814691-AG-A,GA 26668544-AG-A,GA ***
27385105-T-C 25238958-T-C P1_g3 ***
26209300-G-A 24063153-G-A P1_Y1 ***
28387835-T-C 26241688-T-C P1_gr2 ***
28091411-G-A 25945264-G-A P1_Y2 ***
28091431-C-A 25945284-C-A P1_Y2 ***
28091433-G-A 25945286-G-A P1_Y2 ***
28091444-T-A 25945297-T-A P1_Y2 ***
28091455-A-T 25945308-A-T P1_Y2 10×AC***
28374453-A-T 26228306-A-T P1_gr2 ***
28387833-A-G 26241686-A-G P1_gr2 ***
28387849-A-C 26241702-A-C P1_gr2 ***
27896949-A-G 25750802-A-G P1_Y2 ***
28387860-T-A 26241713-T-A P1_gr2 ***
28387863-G-T 26241716-G-T P1_gr2 ***
28387869-C-A 26241722-C-A P1_gr2 ***
28387877-C-T 26241730-C-T P1_gr2 ***
28434131-G-A 26287984-G-A P1_gr2 ***
28489793-C-A 26343646-C-A ***
28491427-A-T 26345280-A-T ***
27997660-G-A 25851513-G-A P1_Y2 ***
27896937-C-G 25750790-C-G P1_Y2 ***
26209303-C-A 24063156-C-A P1_Y1 ***
27423550-T-A 25277403-T-A P1_g3 ***
26209312-C-T 24063165-C-T P1_Y1 ***
26345581-A-G 24199434-A-G P1_Y1 ***
27385064-T-G 25238917-T-G P1_g3 ***
27385074-C-T 25238927-C-T P1_g3 ***
27385079-G-A 25238932-G-A P1_g3 ***
24528150-A-C 22382003-A-C P3_t2 ***
27423533-A-T 25277386-A-T P1_g3 ***
27462488-T-A 25316341-T-A P1_Y2 15×AC***
27896927-C-A 25750780-C-A P1_Y2 ***
27637426-A-G 25491279-A-G P1_Y2 ***
27691964-A-T 25545817-A-T P1_Y2 ***
27780410-T-A 25634263-T-A P1_Y2 ***
27780415-C-A 25634268-C-A P1_Y2 ***
27780424-C-A 25634277-C-A P1_Y2 ***
27780435-G-A 25634288-G-A P1_Y2 ***
27780437-G-A 25634290-G-A P1_Y2 ***
27780476-G-A 25634329-G-A P1_Y2 ***
24528151-A-T 22382004-A-T P3_t2 ***
24259989-C-T 22113842-C-T P3_b1 ***
24528149-A-T 22382002-A-T P3_t2 ***
22344154-C-A 20182268-C-A DYZ19 ***
22342583-A-T 20180697-A-T DYZ19 ***
22342588-T-G 20180702-T-G DYZ19 ***
22342877-G-T 20180991-G-T DYZ19 ***
22342938-G-C 20181052-G-C DYZ19 ***
22344040-G-T 20182154-G-T DYZ19 ***
22344085-T-A 20182199-T-A DYZ19 ***
22344123-A-G 20182237-A-G DYZ19 ***
22344157-A-T 20182271-A-T DYZ19 ***
22337441-A-G 20175555-A-G DYZ19 ***
22344334-G-C 20182448-G-C DYZ19 ***
22344387-G-A 20182501-G-A DYZ19 ***
22344390-G-A 20182504-G-A DYZ19 ***
22349359-A-T 20187473-A-T DYZ19 ***
22349394-C-T 20187508-C-T DYZ19 ***
22349423-T-C 20187537-T-C DYZ19 ***
22352648-A-T 20190762-A-T DYZ19 ***
22342542-G-T 20180656-G-T DYZ19 ***
22337437-A-C 20175551-A-C DYZ19 ***
22355069-G-A 20193183-G-A DYZ19 ***
22297481-G-A 20135595-G-A DYZ19 ***
22268318-T-G 20106432-T-G DYZ19 ***
22281996-G-A 20120110-G-A DYZ19 ***
22282202-C-T 20120316-C-T DYZ19 ***
22297348-G-T 20135462-G-T DYZ19 ***
22297453-T-A 20135567-T-A DYZ19 ***
22297459-T-A 20135573-T-A DYZ19 ***
22297476-T-G 20135590-T-G DYZ19 ***
22297489-T-A 20135603-T-A DYZ19 ***
22332851-T-A 20170965-T-A DYZ19 ***
22297551-C-T 20135665-C-T DYZ19 ***
22297678-A-G 20135792-A-G DYZ19 ***
22304384-G-A 20142498-G-A DYZ19 ***
22309880-T-G 20147994-T-G DYZ19 ***
22332806-G-A 20170920-G-A DYZ19 ***
22332808-T-A 20170922-T-A DYZ19 ***
22332813-C-A 20170927-C-A DYZ19 ***
22332835-A-T 20170949-A-T DYZ19 ***
22352653-C-A 20190767-C-A DYZ19 ***
22355102-A-G 20193216-A-G DYZ19 ***
24528147-A-C 22382000-A-C P3_t2 ***
22504649-T-A 20342763-T-A DYZ19 ***
22481253-T-G 20319367-T-G DYZ19 ***
22481691-G-T 20319805-G-T DYZ19 ***
22481801-G-C 20319915-G-C DYZ19 ***
22496026-C-A 20334140-C-A DYZ19 ***
22502206-G-A 20340320-G-A DYZ19 ***
22503061-C-A 20341175-C-A DYZ19 ***
22503065-A-T 20341179-A-T DYZ19 ***
22694171-G-T 20532285-G-T ***
22439658-T-A 20277772-T-A DYZ19 ***
24107374-G-A 21961227-G-A P3_b1 12×A***
28722436-T-A 26576289-T-A 13×A***
24259993-A-C 22113846-A-C P3_b1 ***
24260010-C-T 22113863-C-T P3_b1 ***
24260015-C-T 22113868-C-T P3_b1 ***
24260026-C-A 22113879-C-A P3_b1 ***
24260027-A-G 22113880-A-G P3_b1 ***
24260030-C-G 22113883-C-G P3_b1 ***
22481215-G-C 20319329-G-C DYZ19 ***
22435950-C-T 20274064-C-T DYZ19 ***
22360029-A-T 20198143-A-T DYZ19 ***
22364682-G-A 20202796-G-A DYZ19 ***
22360035-T-C 20198149-T-C DYZ19 ***
22360043-T-G 20198157-T-G DYZ19 ***
22360052-G-A 20198166-G-A DYZ19 ***
22360303-A-C 20198417-A-C DYZ19 ***
22360373-T-G 20198487-T-G DYZ19 ***
22361353-T-A 20199467-T-A DYZ19 ***
22364637-G-T 20202751-G-T DYZ19 ***
22365984-G-T 20204098-G-T DYZ19 ***
22421857-G-T 20259971-G-T DYZ19 ***
22365985-C-A 20204099-C-A DYZ19 ***
22365986-A-G 20204100-A-G DYZ19 ***
22421003-G-T 20259117-G-T DYZ19 ***
22421004-A-T 20259118-A-T DYZ19 ***
22421010-T-C 20259124-T-C DYZ19 ***
22421013-C-T 20259127-C-T DYZ19 ***
22421584-T-G 20259698-T-G DYZ19 ***
22421685-C-G 20259799-C-G DYZ19 ***
28681913-T-C 26535766-T-C ***
58843141-T-G 56747730-A-C ***
58819922-A-T 56770949-T-A ***
18001466-GCAAC-ACAAT 15889586-GCAAC-ACAAT P7_Gap ***
13481362-CCGTG-AAGTT 11325686-CCGTG-AAGTT ***
13489029-TGCGC-CACGT 11333353-TGCGC-CACGT ***
13529856-GGCG-TGCA 11374180-GGCG-TGCA ***
14331131-C-CTTTT 12210425-C-CTTTT 25×T***
14658026-CTTTTT-C 12546091-CTTTTT-C 16×T***
14738413-CTT-C 12626481-CTT-C 17×T***
17926534-C-CAAAAAAAAA 15814654-C-CAAAAAAAAA 25×A***
18270302-GTTTG-TTTTT 16158422-GTTTG-TTTTT ***
13470854-TT-CC 11315178-TT-CC ***
19006136-C-CAA 16894256-C-CAA 21×A***
19656732-CA-TT 17544852-CA-TT P5_Prx ***
19656739-GGA-TGT 17544859-GGA-TGT P5_Prx ***
19937290-C-CCCCCA 17825410-C-CCCCCA P5_Prx ***
20531449-AG-GT 18369563-AG-GT P5_Dst ***
20531483-GCTG-CCTA 18369597-GCTG-CCTA P5_Dst ***
20531502-AT-TC 18369616-AT-TC P5_Dst ***
13475916-ATAA-GTAG 11320240-ATAA-GTAG ***
13467783-AA-TT 11312107-AA-TT ***
22262643-C-CT 20100757-C-CT DYZ19 ***
4336695-A-ATTTTTTT 4468654-A-ATTTTTTT 30×T***
28597843-C-CT 26451696-C-CT 15×T***
15262458-C-CAA 13150542-C-CAA 30×A***
5130497-GT-G 5262456-GT-G 24×T***
15658118-G-GTA 13546238-G-GTA ***
22297624-TT-CA 20135738-TT-CA DYZ19 ***
2729648-C-CTTTT 2861607-C-CTTTT 25×T***
3550573-TC-AA 3682532-TC-AA ***
5399016-A-ATTTTT 5530975-A-ATTTTT 18×T***
13312196-CAC-TGT 11156520-CAC-TGT ***
5869966-G-GTTTTTTTTTT 6001925-G-GTTTTTTTTTT 15×T***
9303933-CGACAATG-C 9466324-CGACAATG-C ***
9930204-AGGAAGCC-GGGGAGCG 10092595-AGGAAGCC-GGGGAGCG ***
10013106-GGGA-TGGC 10175497-GGGA-TGGC ***
10067032-T-TTCTG 10229423-T-TTCTG ***
13129621-GCAC-ACAT 10619107-GCAC-ACAT ***
13222417-CACT-GAAG 11066741-CACT-GAAG ***
13253822-GTGCT-CTTCC 11098146-GTGCT-CTTCC ***
21940037-CATATAT-C 19778151-CATATAT-C 22×AT***
22262664-AC-A 20100778-AC-A DYZ19 ***
13924970-C-CAA 11804264-C-CAA 20×A***
19937601-TA-G 17825721-TA-G P5_Prx ***
28814439-AA-TG 26668292-AA-TG ***
58876993-TC-T 56713875-AG-A ***
58884224-ATTTGATGCCATTCCG-A 56706620-GATGGCATCAAACGGA-G ***
58894067-CTC-TTG 56696802-GAG-CAA ***
18688521-C-AA 16576641-C-AA ***
6586785-AC-CCTT 6718744-AC-CCTT ***
13129690-TCAAATCTGTCAGT-AAAACTCTATGAGA 10619176-TCAAATCTGTCAGT-AAAACTCTATGAGA ***
22495769-CTCATC-TCACTT 20333883-CTCATC-TCACTT DYZ19 ***
28478036-T-TAGAG 26331889-T-TAGAG ***
13140074-GAG-CAC 10629560-GAG-CAC ***
58821131-GATTCTCT-CATTTTC 56769733-AGAGAATC-GAAAATG ***
9303945-ACCTGGC-G 9466336-ACCTGGC-G ***
22297573-AGT-TAC 20135687-AGT-TAC DYZ19 ***
13482006-AGTTA-CGT 11326330-AGTTA-CGT ***
22297662-T-GG 20135776-T-GG DYZ19 ***
13469933-AC-CA 11314257-AC-CA ***
28478036-TAT-GAGAGAG 26331889-TAT-GAGAGAG ***
27546140-TC-T 25399993-TC-T FGC389 P1_Y2 ***
22263752-CAATACA-TACTTCC 20101866-CAATACA-TACTTCC DYZ19 ***
22297714-TACA-CACT 20135828-TACA-CACT DYZ19 ***
22266203-ATC-TTG 20104317-ATC-TTG DYZ19 ***
22268290-CTTAGTGGTGACC-ATTGGTGTTGAGT 20106404-CTTAGTGGTGACC-ATTGGTGTTGAGT DYZ19 ***
22297453-TGAGCGT-AGAGTGA 20135567-TGAGCGT-AGAGTGA DYZ19 ***
22297487-AGT-TGA 20135601-AGT-TGA DYZ19 ***
22297597-AGG-TGT 20135711-AGG-TGT DYZ19 ***
22297631-GTG-ATC 20135745-GTG-ATC DYZ19 ***
22297702-TGAATGT-AGAGTGA 20135816-TGAATGT-AGAGTGA DYZ19 ***
22322617-TGTCT-CGATC 20160731-TGTCT-CGATC DYZ19 ***
27466713-G-GTTAAAA 25320566-G-GTTAAAA P1_Y2 21×A***
22342573-TA-T 20180687-TA-T DYZ19 ***
22360387-TC-T 20198501-TC-T DYZ19 ***
22366725-AGTAT-TGTGA 20204839-AGTAT-TGTGA DYZ19 ***
22421536-CAG-TAA 20259650-CAG-TAA DYZ19 ***
22450002-TTA-CAT 20288116-TTA-CAT DYZ19 ***
22496169-TTTT-CTTA 20334283-TTTT-CTTA DYZ19 ***
23196176-GTTTTTT-G 21034290-GTTTTTT-G 20×T***
25472022-TCTTC-T 23325875-TCTTC-T P2_r2 ***
3999821-G-GTATA 4131780-G-GTATA 17×TA***
7270276-C-CTTT 7402235-C-CTTT 25×T***
58827119-C-A 56763752-G-T ***
58852260-C-G 56738611-G-C ***
58847324-T-G 56743547-A-C ***
58847325-A-C 56743546-T-G ***
58847785-C-A 56743086-G-T ***
58847797-C-T 56743074-G-A ***
58847920-A-C 56742951-T-G ***
58847937-T-C 56742934-A-G ***
58847988-G-T 56742883-C-A ***
58856239-T-C 56734632-A-G ***
58847307-T-G 56743564-A-C ***
58856247-T-A 56734624-A-T ***
58861518-T-A 56729353-A-T ***
58862115-A-T 56728756-T-A ***
58862475-A-T 56728396-T-A ***
58865739-A-T 56725132-T-A ***
58865755-C-T 56725116-G-A ***
58865760-T-A 56725111-A-T ***
58847316-T-A 56743555-A-T ***
58846289-G-C 56744582-C-G ***
58865765-T-G 56725106-A-C ***
58843145-G-C 56747726-C-G ***
58829066-T-A 56761805-A-T ***
58833766-T-A 56757105-A-T ***
58839127-A-T 56751744-T-A ***
58840515-G-C 56750356-C-G ***
58840568-T-C 56750303-A-G ***
58840611-C-A 56750260-G-T ***
22268297-G-T 20106411-G-T DYZ19 ***
58843212-G-C 56747659-C-G ***
58846274-C-T 56744597-G-A ***
58843447-T-C 56747424-A-G ***
58843711-A-G 56747160-T-C ***
58843721-G-A 56747150-C-T ***
58843734-T-C 56747137-A-G ***
58843749-T-A 56747122-A-T ***
58843791-T-A 56747080-A-T ***
58844242-A-C 56746629-T-G ***
58844628-T-C 56746243-A-G ***
58865761-A-T 56725110-T-A ***
58868284-T-A 56722587-A-T ***
13254790-CGA-GGC 11099114-CGA-GGC ***
58908671-T-A 56682200-A-T ***
58883097-T-G 56707774-A-C ***
58884288-C-T 56706583-G-A ***
58903949-T-A 56686922-A-T ***
58906560-A-T 56684311-T-A ***
58908644-T-C 56682227-A-G ***
58908655-T-C 56682216-A-G ***
58908656-C-G 56682215-G-C ***
58908683-G-T 56682188-C-A ***
58879674-G-C 56711197-C-G ***
58908690-G-A 56682181-C-T ***
58910674-C-A 56680197-G-T ***
58910676-T-G 56680195-A-C ***
58913057-G-C 56677814-C-G ***
58913075-G-A 56677796-C-T ***
58916643-G-C 56674228-C-G ***
58916649-T-C 56674222-A-G ***
58916653-C-A 56674218-G-T ***
58881937-C-G 56708934-G-C ***
58877144-T-C 56713727-A-G ***
58868293-G-A 56722578-C-T ***
58877000-A-C 56713871-T-G ***
58868314-T-A 56722557-A-T ***
58870580-G-A 56720291-C-T ***
58870613-A-T 56720258-T-A ***
58872626-G-C 56718245-C-G ***
58874506-A-T 56716365-T-A ***
58874513-C-A 56716358-G-T ***
58876985-G-C 56713886-C-G ***
58877002-T-C 56713869-A-G ***
58877142-T-A 56713729-A-T ***
58877004-C-A 56713867-G-T ***
58877016-A-C 56713855-T-G ***
58877034-C-G 56713837-G-C ***
58877042-C-T 56713829-G-A ***
58877057-T-C 56713814-A-G ***
58877061-C-G 56713810-G-C ***
58877065-C-G 56713806-G-C ***
58877134-T-C 56713737-A-G ***
22268301-C-G 20106415-C-G DYZ19 ***
22232096-C-A 20070210-C-A DYZ19 ***
22263796-C-T 20101910-C-T DYZ19 ***
9945614-T-G 10108005-T-G ***
9657645-A-C 9820036-A-C IR3_Prx ***
9657646-A-T 9820037-A-T IR3_Prx ***
9669393-A-C 9831784-A-C IR3_Prx ***
9669406-A-C 9831797-A-C IR3_Prx ***
9669409-A-C 9831800-A-C IR3_Prx ***
9734616-A-C 9897007-A-C IR3_Prx ***
9936818-A-T 10099209-A-T ***
10025643-C-A 10188034-C-A A14811 ***
9657615-T-G 9820006-T-G IR3_Prx ***
10059897-T-C 10222288-T-C ***
10059912-G-T 10222303-G-T ***
10090302-C-G 10252693-C-G ***
10090303-T-G 10252694-T-G ***
10090306-G-C 10252697-G-C ***
10090314-T-G 10252705-T-G ***
10090658-T-C 10253049-T-C ***
9657636-G-C 9820027-G-C IR3_Prx ***
9544147-G-A 9706538-G-A IR3_Prx ***
10090697-A-C 10253088-A-C ***
7536070-A-G 7668029-A-G ***
5949116-T-C 6081075-T-C ***
6142524-T-C 6274483-T-C IR3_Dst ***
6392559-T-C 6524518-T-C ***
6498160-T-C 6630119-T-C ***
6681973-T-C 6813932-T-C ***
7077430-G-A 7209389-G-A ***
7107222-A-T 7239181-A-T ***
7632857-T-C 7764816-T-C ***
9544115-C-T 9706506-C-T IR3_Prx ***
7898502-C-T 8030461-C-T ***
7984784-G-A 8116743-G-A ***
8004285-A-G 8136244-A-G ***
8061862-G-A 8193821-G-A ***
8825584-A-G 8957543-A-G ***
9201809-C-T 9364200-C-T ***
9303954-C-T 9466345-C-T ***
9473679-A-T 9636070-A-T ***
10090675-G-T 10253066-G-T ***
10090704-C-A 10253095-C-A ***
5949099-A-G 6081058-A-G ***
13484521-A-C 11328845-A-C ***
13328814-G-A 11173138-G-A ***
13465335-T-A 11309659-T-A ***
13465355-T-G 11309679-T-G ***
13467393-C-G 11311717-C-G ***
13484502-G-A 11328826-G-A ***
13484514-C-G 11328838-C-G ***
13484515-A-C 11328839-A-C ***
13484523-T-C 11328847-T-C ***
13253834-T-G 11098158-T-G ***
13486883-T-C 11331207-T-C ***
13491912-T-C 11336236-T-C ***
13508300-C-T 11352624-C-T ***
13514085-A-G 11358409-A-G ***
13515395-G-A 11359719-G-A ***
13515912-G-C 11360236-G-C FGC11636 ***
13516442-A-T 11360766-A-T ***
13287142-G-T 11131466-G-T ***
13253826-T-C 11098150-T-C ***
10090705-C-G 10253096-C-G ***
13109918-A-T 10599404-A-T ***
10090725-A-T 10253116-A-T ***
10091408-T-A 10253799-T-A ***
10091409-C-T 10253800-C-T ***
10091410-C-T 10253801-C-T ***
10091412-G-T 10253803-G-T ***
10091413-G-C 10253804-G-C ***
10091418-A-T 10253809-A-T ***
13109955-A-T 10599441-A-T ***
13253824-G-T 11098148-G-T ***
13109983-T-A 10599469-T-A ***
13110799-G-A 10600285-G-A ***
13110880-G-T 10600366-G-T ***
13121669-A-C 10611155-A-C ***
13132994-G-T 10622480-G-T ***
13133003-G-T 10622489-G-T ***
13222389-G-A 11066713-G-A A3340 ***
13253822-G-C 11098146-G-C ***
5949106-G-C 6081065-G-C ***
5792829-T-G 5924788-T-G ***
13700533-T-A 11544857-T-A ***
19656534-TG-CA 17544654-TG-CA P5_Prx ***
24836794-A-G 22690647-A-G P3_b2 ***
58847905-G-C 56742966-C-G ***
58848367-G-C 56742504-C-G ***
58848399-G-C 56742472-C-G ***
58848499-G-A 56742372-C-T ***
58848519-G-A 56742352-C-T ***
58877063-G-T 56713808-C-A ***
19656560-CTTCTTA-GTCATTG 17544680-CTTCTTA-GTCATTG P5_Prx ***
22366532-T-A 20204646-T-A DYZ19 ***
9956830-T-C 10119221-T-C ***
13292569-A-G 11136893-A-G ***
58877153-C-T 56713718-G-A ***
22297705-A-G 20135819-A-G DYZ19 ***
58829075-G-A 56761796-C-T ***
58916669-G-T 56674202-C-A ***
13287177-A-G 11131501-A-G ***
22421582-T-C 20259696-T-C DYZ19 ***
22364630-A-T 20202744-A-T DYZ19 ***
13476019-G-A 11320343-G-A ***
28802841-TTGG-GCGA 26656694-TTGG-GCGA ***
7211969-A-C 7343928-A-C ***
22241568-C-A 20079682-C-A DYZ19 ***
10026093-A-C 10188484-A-C ***
13475909-T-G 11320233-T-G ***
22297464-A-G 20135578-A-G DYZ19 ***
25709386-G-GTTTT 23563239-G-GTTTT P1_b3 31×T***
58912947-C-T 56677924-G-A ***
9952814-G-T 10115205-G-T ***
22360301-A-T 20198415-A-T DYZ19 ***
19937585-G-A 17825705-G-A P5_Prx ***
19646325-G-T 17534445-G-T P5_Prx ***
19656572-C-T 17544692-C-T P5_Prx ***
19656617-C-A 17544737-C-A P5_Prx ***
22236522-G-A 20074636-G-A DYZ19 ***
22250224-G-A 20088338-G-A DYZ19 ***
22257049-C-G 20095163-C-G DYZ19 ***
22268290-C-A 20106404-C-A DYZ19 ***
13306346-T-G 11150670-T-G ***
6565771-T-C 6697730-T-C ***
5221843-A-T 5353802-A-T ***
58819939-A-G 56770932-T-C ***
10029616-G-T 10192007-G-T ***
13133002-G-A 10622488-G-A ***
13132993-G-A 10622479-G-A ***
13567082-C-T 11411406-C-T ***
13392947-T-C 11237271-T-C ***
13110094-A-C 10599580-A-C A721 ***
13515340-G-T 11359664-G-T ***
2903236-T-C 3035195-T-C ***
13476008-G-A 11320332-G-A ***
3446607-C-A 3578566-C-A 25×A***
3930606-C-T 4062565-C-T ***
3930624-C-A 4062583-C-A ***
4201090-G-T 4333049-G-T ***
4226795-A-C 4358754-A-C ***
4236126-T-C 4368085-T-C ***
4289913-A-C 4421872-A-C ***
4783675-G-C 4915634-G-C ***
22297578-T-A 20135692-T-A DYZ19 ***
13476035-A-T 11320359-A-T ***
5905918-G-A 6037877-G-A ***
22297684-T-A 20135798-T-A DYZ19 ***
7211965-A-C 7343924-A-C ***
18001442-C-G 15889562-C-G P7_Gap ***
3968965-G-A 4100924-G-A FGC3523 Y4424 ***
13258139-G-A 11102463-G-A BY210088 ***
22268380-T-A 20106494-T-A DYZ19 ***
22304360-G-T 20142474-G-T DYZ19 ***
10067069-C-T 10229460-C-T ***
3930620-A-C 4062579-A-C 8×AC***
13133004-G-C 10622490-G-C ***
13488969-G-A 11333293-G-A ***
24207822-T-C 22061675-T-C P3_b1 ***
22297573-A-T 20135687-A-T DYZ19 ***
13110090-C-G 10599576-C-G ***
22297497-A-T 20135611-A-T DYZ19 ***
22256954-G-C 20095068-G-C DYZ19 ***
13110105-T-A 10599591-T-A ***
58863982-C-G 56726889-G-C ***
13567070-G-C 11411394-G-C ***
13716391-T-G 11560715-T-G ***
22263792-A-T 20101906-A-T DYZ19 ***
20522775-C-T 18360889-C-T P5_Dst ***
20374114-A-T 18212228-A-T P5_Dst ***
20374116-A-G 18212230-A-G P5_Dst ***
20374120-A-T 18212234-A-T P5_Dst ***
20374127-A-C 18212241-A-C P5_Dst ***
20522734-G-C 18360848-G-C P5_Dst ***
20522747-C-T 18360861-C-T P5_Dst ***
20522768-C-T 18360882-C-T P5_Dst ***
20522788-C-T 18360902-C-T P5_Dst ***
20374087-A-G 18212201-A-G P5_Dst ***
20522789-A-C 18360903-A-C P5_Dst ***
20522800-T-G 18360914-T-G P5_Dst ***
20522818-A-G 18360932-A-G P5_Dst ***
20522825-G-T 18360939-G-T P5_Dst ***
20522845-A-C 18360959-A-C P5_Dst ***
20522848-G-T 18360962-G-T P5_Dst ***
20522853-A-C 18360967-A-C P5_Dst ***
20374096-C-G 18212210-C-G P5_Dst ***
20353477-T-A 18191591-T-A P5_Dst ***
20531450-G-T 18369564-G-T P5_Dst ***
19931046-G-A 17819166-G-A P5_Prx ***
19784956-G-A 17673076-G-A P5_Prx ***
19784957-C-A 17673077-C-A P5_Prx ***
19784961-C-A 17673081-C-A P5_Prx ***
19814934-A-T 17703054-A-T P5_Prx ***
19814952-T-A 17703072-T-A P5_Prx ***
19931039-A-T 17819159-A-T P5_Prx ***
19931043-G-A 17819163-G-A P5_Prx ***
19931047-T-A 17819167-T-A P5_Prx ***
20045341-A-G 17933461-A-G P5_Prx ***
19931050-C-A 17819170-C-A P5_Prx ***
19931052-C-G 17819172-C-G P5_Prx ***
19931077-T-A 17819197-T-A P5_Prx ***
19931082-T-A 17819202-T-A P5_Prx ***
19931084-T-C 17819204-T-C P5_Prx ***
19931086-G-C 17819206-G-C P5_Prx ***
19937302-G-C 17825422-G-C P5_Prx ***
19966727-G-A 17854847-G-A P5_Prx ***
20531449-A-G 18369563-A-G P5_Dst ***
20531457-C-A 18369571-C-A P5_Dst ***
19784954-C-A 17673074-C-A P5_Prx ***
22232071-T-A 20070185-T-A DYZ19 ***
20970899-C-T 18809013-C-T P4_Dst ***
20979723-G-A 18817837-G-A P4_Dst ***
21061615-G-A 18899729-G-A ***
21539738-A-G 19377852-A-G ***
21575337-G-C 19413451-G-C ***
22031913-A-G 19870027-A-G ***
22227755-T-A 20065869-T-A DYZ19 ***
22232092-G-A 20070206-G-A DYZ19 ***
20544933-A-T 18383047-A-T P5_Dst ***
21477220-C-A,CTTA 19315334-C-A,CTTA 8×TTCTTA***
22232111-C-G 20070225-C-G DYZ19 ***
22235093-G-T 20073207-G-T DYZ19 ***
22236511-C-A 20074625-C-A DYZ19 ***
22248333-A-G 20086447-A-G DYZ19 ***
22248457-G-C 20086571-G-C DYZ19 ***
22248516-A-C 20086630-A-C DYZ19 ***
20545154-A-T 18383268-A-T P5_Dst ***
20544901-T-G 18383015-T-G P5_Dst ***
20531469-A-G 18369583-A-G P5_Dst ***
20531664-T-G 18369778-T-G P5_Dst ***
20531483-G-C 18369597-G-C P5_Dst ***
20531486-G-A 18369600-G-A P5_Dst ***
20531502-A-T 18369616-A-T P5_Dst ***
20531503-T-C 18369617-T-C P5_Dst ***
20531511-G-A 18369625-G-A P5_Dst ***
20531531-T-C 18369645-T-C P5_Dst ***
20531661-G-A 18369775-G-A P5_Dst ***
20531667-C-T 18369781-C-T P5_Dst ***
20544893-G-A 18383007-G-A P5_Dst ***
20531675-T-C 18369789-T-C P5_Dst ***
20531676-G-C 18369790-G-C P5_Dst ***
20531677-C-A 18369791-C-A P5_Dst ***
20531681-A-C 18369795-A-C P5_Dst ***
20531695-C-T 18369809-C-T P5_Dst ***
20531698-A-C 18369812-A-C P5_Dst ***
20531707-G-A 18369821-G-A P5_Dst ***
20531723-G-A 18369837-G-A P5_Dst ***
19784955-T-A 17673075-T-A P5_Prx ***
19784952-C-A 17673072-C-A P5_Prx ***
13716394-G-A 11560718-G-A ***
18333778-A-T 16221898-A-T P6_Prx ***
17035318-C-T 14923438-C-T ***
17999468-A-T 15887588-A-T P7_Gap ***
18270297-C-T 16158417-C-T ***
18333481-A-T 16221601-A-T P6_Prx ***
18333709-G-T 16221829-G-T P6_Prx ***
18333746-A-T 16221866-A-T P6_Prx ***
18333761-G-T 16221881-G-T P6_Prx ***
18343873-G-T 16231993-G-T P6_Prx ***
15637191-A-G 13525311-A-G ***
18440396-G-A 16328516-G-A P6_Dst ***
18440425-C-G 16328545-C-G P6_Dst ***
18440439-C-A 16328559-C-A P6_Dst ***
18483073-A-C 16371193-A-C P6_Dst ***
18483082-C-T 16371202-C-T P6_Dst ***
18483099-C-T 16371219-C-T P6_Dst ***
18511226-G-A 16399346-G-A P6_Dst ***
16785733-A-G 14673853-A-G ***
15618562-T-C 13506682-T-C ***
19027697-C-T 16915817-C-T ***
13740731-T-A 11585055-T-A ***
13716421-A-T 11560745-A-T ***
13716426-A-T 11560750-A-T ***
13716432-A-G 11560756-A-G ***
13716437-A-G 11560761-A-G ***
13734029-A-G 11578353-A-G ***
13734079-A-G 11578403-A-G ***
13735710-G-C 11580034-G-C ***
13740788-G-T 11585112-G-T ***
15520678-C-G 13408798-C-G ***
14666742-A-T 12554808-A-T ***
14727302-G-A 12615370-G-A ***
14727306-C-T 12615374-C-T ***
14727314-G-A 12615382-G-A ***
14911004-G-T 12799071-G-T ***
15245934-G-T 13134020-G-T ***
15520665-C-T 13408785-C-T ***
15520675-A-T 13408795-A-T ***
19027594-A-C 16915714-A-C ***
19098286-A-T 16986406-A-T ***
19784940-C-A 17673060-C-A P5_Prx ***
19784925-T-A 17673045-T-A P5_Prx ***
19656741-A-T 17544861-A-T P5_Prx ***
19656762-T-C 17544882-T-C P5_Prx ***
19656781-G-A 17544901-G-A P5_Prx ***
19784917-A-T 17673037-A-T P5_Prx ***
19784919-C-A 17673039-C-A P5_Prx ***
19784920-C-A 17673040-C-A P5_Prx ***
19784922-G-A 17673042-G-A P5_Prx ***
19784926-G-A 17673046-G-A P5_Prx ***
19656733-A-T 17544853-A-T P5_Prx ***
19784927-G-A 17673047-G-A P5_Prx ***
19784929-G-A 17673049-G-A P5_Prx ***
19784930-T-A 17673050-T-A P5_Prx ***
19784932-C-A 17673052-C-A P5_Prx ***
19784934-G-A 17673054-G-A P5_Prx ***
19784935-T-A 17673055-T-A P5_Prx ***
19784938-T-A 17673058-T-A P5_Prx ***
19784939-G-A 17673059-G-A P5_Prx ***
19656739-G-T 17544859-G-T P5_Prx ***
19656732-C-T 17544852-C-T P5_Prx ***
19210282-C-A 17098402-C-A ***
19656586-G-T 17544706-G-T P5_Prx ***
19604835-C-A 17492955-C-A P5_Prx ***
19656534-T-C 17544654-T-C P5_Prx ***
19656535-G-A 17544655-G-A P5_Prx ***
19656560-C-G 17544680-C-G P5_Prx ***
19656562-T-C 17544682-T-C P5_Prx ***
19656563-C-A 17544683-C-A P5_Prx ***
19656566-A-G 17544686-A-G P5_Prx ***
19656658-A-C 17544778-A-C P5_Prx ***
19656731-A-T 17544851-A-T P5_Prx ***
19656666-G-C 17544786-G-C P5_Prx ***
19656670-A-C 17544790-A-C P5_Prx ***
19656671-A-T 17544791-A-T P5_Prx ***
19656678-C-T 17544798-C-T P5_Prx ***
19656697-G-C 17544817-G-C P5_Prx ***
19656702-G-A 17544822-G-A P5_Prx ***
19656707-T-C 17544827-T-C P5_Prx ***
19656730-G-T 17544850-G-T P5_Prx ***
20531468-CA-G 18369582-CA-G P5_Dst ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
11R9D25353250-TTTTG-T23207103-TTTTG-TFound in BAM file. Looks like 26 of 98 reads have this mutation. It is found in red palindromic region with a total of 4 ambiguous positions.
11R9D22425775-C-A20263889-C-AI'm not sure how many ambiguous positions are involved, but at least some of them show the C to A mutation.
11R9D22284969-T-G20123083-T-GChecked BAM file. There are 693 reads which cover this position. There are 4 with an A and 3 with a C, non of which look like they belong there. 124 reads with a G. 562 with a T.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 11R9D*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs61
Variant counts last updated 2019-03-05 01:00:54.

* BED data not available. Using default values.

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