Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > L513/S215/DF1 > S6365 > Z16385 > BY363 > BY359

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
52669
FTDNA
52669
BigY2
f52669
26274735-C-T 24128588-C-T P1_Y1 A****A*
28817805-T-C 26671658-T-C BY13097 A*A*
4409301-C-T 4541260-C-T A*
26424314-C-CA 24278167-C-CA P1_Y1 23×AA*
14435187-G-C 12314460-G-C YA****A*
13449890-T-TGTATTCC 11294214-T-TGTATTCC A*
13687537-G-C 11531861-G-C A*
26422718-C-T 24276571-C-T P1_Y1 A*
15270838-G-A 13158927-G-A FGC31898 YY**+
4649121-A-G 4781080-A-G +
10820245-A-C +
4880307-T-C 5012266-T-C +
5133780-T-C 5265739-T-C +
13838516-G-A 11717810-G-A BY43264 ***+
4332696-C-T 4464655-C-T +
4564458-G-A 4696417-G-A +
4712504-T-C 4844463-T-C +
17637828-C-T 15525948-C-T YY+**
10507-T-A +
11659191-G-A +**
19746081-C-G 17634201-C-G P5_Prx +**
14985146-T-G 12873214-T-G YY+
5988571-GT-G 6120530-GT-G 9×T+
5862251-C-T 5994210-C-T +
6133666-G-A 6265625-G-A BY42649 **+
5637719-C-T 5769678-C-T +
5006737-T-C 5138696-T-C +
20822800-G-A 18660914-G-A FGC31901 P4_Gap ++
21832711-G-A 19670825-G-A Y+
19226176-CATAGATAGATAAATAG-C 17114296-CATAGATAGATAAATAG-C **+**
18078970-C-A 15967090-C-A FGC31899 YY**++
9979382-G-GT 10141773-G-GT ++
3547186-A-G 3679145-A-G +
6942898-A-T 7074857-A-T YY*
7671307-T-TACAC 7803266-T-TACAC 17×AC*
56851533-T-C **
15168075-C-T 13056161-C-T **
15047508-C-A 12935599-C-A **
3460970-T-G 3592929-T-G **
14911820-C-A 12799887-C-A **
14797696-C-G 12685767-C-G **
14747531-C-A 12635600-C-A **
10796281-A-G **
14693335-A-G 12581401-A-G **
14585627-G-T 12473827-G-T **
14620068-A-G 12508266-A-G **
15174670-C-A 13062756-C-A **
14548205-C-T 12436406-C-T **
10798681-G-C **
14493551-C-A 12381748-C-A **
14420291-G-C 12299566-G-C **
14385404-G-A 12264700-G-A **
14366471-C-A 12245766-C-A **
14331131-CTTTTTTTTTTTT-C 12210425-CTTTTTTTTTTTT-C 25×T**
15172591-C-A 13060677-C-A **
15221911-A-G 13109997-A-G **
15202475-A-G 13090561-A-G **
15918541-C-A 13806661-C-A **
16351606-T-A 14239726-T-A **
16271004-C-A 14159124-C-A **
16577005-T-A 14465125-T-A **
16180396-G-A 14068516-G-A **
16044979-C-A 13933099-C-A **
16000926-C-G 13889046-C-G **
10752765-G-T **
15987322-C-A 13875442-C-A **
15987297-C-A 13875417-C-A **
15541660-C-A 13429780-C-A **
16405455-C-A 14293575-C-A **
56851552-C-A **
6237-T-G **
10759168-CTCGAT-C **
10761600-T-C **
15342773-C-A 13230892-C-A **
15320658-G-T 13208764-G-T **
10763443-C-A **
14227726-C-A 12107020-C-A **
15221927-T-A 13110013-T-A **
14273979-C-A 12153273-C-A **
10895908-C-T **
14216131-C-A 12095425-C-A **
11010219-T-G **
10804830-C-A **
3244086-A-G 3376045-A-G **
10876517-G-T **
13227142-T-C 11071466-T-C **
13227138-C-T 11071462-C-T **
13215462-C-A 11059786-C-A **
13205595-A-T 11049919-A-T FGC67192 9×AT**
11027985-C-A **
11021970-G-T **
10987742-T-G **
13316189-G-A 11160513-G-A **
10877847-C-T **
10877861-T-A **
10976555-T-C **
10954858-A-C **
10954841-T-C **
10949582-C-CCACTA **
10884853-A-T **
10942974-T-C **
10895906-C-T **
10937485-C-T **
13305713-C-G 11150037-C-G **
13355562-G-C 11199886-G-C **
14187183-C-A 12066477-C-A **
11669320-T-A **
10895915-C-CCCTTA **
14183280-C-A 12062574-C-A **
14181507-T-C 12060801-T-C **
13461172-G-A 11305496-G-A **
14076633-C-A 11955927-C-A **
13928116-T-G 11807410-T-G **
10798684-C-T **
13894245-C-A 11773539-C-A **
13809643-G-T 11688937-G-T **
11669106-G-A **
13445823-C-A 11290147-C-A **
11663401-C-T **
10798707-C-G **
16618991-C-A 14507111-C-A **
13723092-C-A 11567416-C-A **
10804734-C-A **
13700730-G-T 11545054-G-T **
10804820-C-A **
13601977-T-C 11446301-T-C **
13576186-G-C 11420510-G-C **
13505392-C-A 11349716-C-A **
16602788-C-A 14490908-C-A **
10976902-G-A **
16652916-C-A 14541036-C-A **
21827897-TA-T 19666011-TA-T **
23185148-G-A 21023262-G-A **
23055345-C-A 20893459-C-A **
22855306-G-T 20693420-G-T **
22782389-GT-G 20620503-GT-G **
22766802-C-A 20604916-C-A **
22530134-G-T 20368248-G-T **
22137095-C-A 19975209-C-A **
28763336-C-T 26617189-C-T **
22010282-G-C 19848396-G-C **
22008514-C-A 19846628-C-A **
21815273-C-A 19653387-C-A **
23186602-GT-G 21024716-GT-G **
21771529-G-C 19609643-G-C **
21692072-C-A 19530186-C-A **
21473721-C-A 19311835-C-A **
21394827-T-A 19232941-T-A **
21275654-C-G 19113768-C-G **
21269275-G-A 19107389-G-A FGC45827 **
21238784-C-A 19076898-C-A **
21207704-T-C 19045818-T-C **
21054449-A-C 18892563-A-C **
20842616-A-G 18680730-A-G P4_Dst **
20508854-A-C 18346968-A-C P5_Dst **
23185228-A-G 21023342-A-G **
23262727-A-G 21100841-A-G **
20495592-AT-A 18333706-AT-A P5_Dst **
28472425-G-T 26326278-G-T **
28660742-A-G 26514595-A-G **
28656147-C-A 26510000-C-A **
28653905-C-A 26507758-C-A **
28742044-T-A 26595897-T-A **
28632737-C-A 26486590-C-A **
28627216-T-C 26481069-T-C **
28623409-C-T 26477262-C-T **
28575098-C-A 26428951-C-A **
28520514-C-T 26374367-C-T **
28519039-T-C 26372892-T-C **
28462253-G-T 26316106-G-T **
28742195-C-A 26596048-C-A **
27952140-T-C 25805993-T-C P1_Y2 **
27862453-G-T 25716306-G-T P1_Y2 **
27860722-C-A 25714575-C-A P1_Y2 **
26908783-C-A 24762636-C-A P1_r3 **
26153840-C-A 24007693-C-A P1_Y1 **
25533089-G-T 23386942-G-T P1_gr1 **
24614414-A-AG 22468267-A-AG P3_t2 **
24384946-T-C 22238799-T-C **
24384908-G-T 22238761-G-T **
24247541-G-T 22101394-G-T P3_b1 **
21750870-G-T **
20501859-G-A 18339973-G-A P5_Dst **
20330486-G-T 18168600-G-T P5_Dst **
16675886-A-G 14564006-A-G **
17181584-A-T 15069704-A-T **
18159633-G-T 16047753-G-T **
18154524-C-A 16042644-C-A **
17870875-C-A 15758995-C-A **
17638315-G-A 15526435-G-A **
17478799-A-C 15366919-A-C **
17452191-G-T 15340311-G-T **
17385357-C-A 15273477-C-A **
17375619-G-T 15263739-G-T **
17337680-C-A 15225800-C-A **
17297270-T-A 15185390-T-A **
17130481-C-A 15018601-C-A **
18280252-C-A 16168372-C-A P6_Prx **
17130266-C-A 15018386-C-A **
17048138-C-A 14936258-C-A **
17036603-G-C 14924723-G-C **
10749357-C-T **
56850143-T-C **
16952943-C-A 14841063-C-A **
16882017-G-T 14770137-G-T **
16760060-G-C 14648180-G-C **
16760058-C-T 14648178-C-T **
16700176-C-A 14588296-C-A **
16675987-C-A 14564107-C-A **
18211079-T-C 16099199-T-C **
18284630-T-C 16172750-T-C P6_Prx **
20306296-A-T 18144410-A-T P5_Dst **
19088010-C-A 16976130-C-A **
20084488-T-C 17972608-T-C P5_Dst **
19770185-T-G 17658305-T-G P5_Prx **
19610290-C-A 17498410-C-A P5_Prx **
19529361-C-T 17417481-C-T **
28781358-C-A 26635211-C-A **
19423711-C-A 17311831-C-A **
19338204-C-A 17226324-C-A **
56838726-G-T **
19127854-G-T 17015974-G-T FGC31900 ****
19127828-C-A 17015948-C-A **
19123243-C-A 17011363-C-A **
19075532-G-A 16963652-G-A **
18336112-C-A 16224232-C-A P6_Prx **
19044305-C-A 16932425-C-A **
19009332-T-A 16897452-T-A **
18951592-G-T 16839712-G-T **
18891275-G-A 16779395-G-A **
56846844-C-T **
18753051-C-A 16641171-C-A **
18573624-C-A 16461744-C-A **
18565237-A-G 16453357-A-G **
18564956-G-A 16453076-G-A **
18564952-A-G 16453072-A-G **
18564946-C-T 16453066-C-T **
10749364-C-T **
9948243-G-A 10110634-G-A **
10749346-G-C **
22202533-C-A 20040647-C-A **
16760055-T-C 14648175-T-C **
8230494-C-A 8362453-C-A **
6210-T-C **
13627218-C-A 11471542-C-A **
18801261-GTATA-G 16689381-GTATA-G 9×TA**
18564980-A-G 16453100-A-G **
14799892-C-A 12687963-C-A **
10885144-C-A **
18615995-C-A 16504115-C-A **
3853619-C-A 3985578-C-A **
14506091-C-A 12394296-C-A **
17014297-C-A 14902417-C-A **
11011335-C-A **
8710017-T-C 8841976-T-C **
22240961-C-CA 20079075-C-CA DYZ19 **
15730437-C-A 13618557-C-A **
56851489-C-A **
14589290-T-C 12477490-T-C **
15630277-G-T 13518397-G-T **
7012361-C-A 7144320-C-A **
25883631-T-TC 23737484-T-TC P1_Y1 **
22022843-C-A 19860957-C-A **
7917181-AT-A 8049140-AT-A **
15928398-G-TT 13816518-G-TT **
2669829-G-C 2801788-G-C **
3346250-A-T 3478209-A-T **
3218168-T-A 3350127-T-A **
3032620-T-G 3164579-T-G **
2950209-C-A 3082168-C-A **
2900644-C-A 3032603-C-A **
2853565-T-C 2985524-T-C **
10749338-T-A **
2762070-A-T 2894029-A-T **
2681144-A-G 2813103-A-G **
10804724-T-A **
16779063-C-A 14667183-C-A **
7337057-C-A 7469016-C-A **
13572281-C-A 11416605-C-A **
19298864-C-A 17186984-C-A **
9824052-T-C 9986443-T-C **
5273605-A-G 5405564-A-G **
15593238-C-A 13481358-C-A **
22660691-C-A 20498805-C-A A16884 **
10941288-G-T **
14799827-C-A 12687898-C-A **
14187174-C-A 12066468-C-A **
14295678-C-A 12174972-C-A **
10795808-T-C **
3696498-T-C 3828457-T-C **
15164625-A-T 13052711-A-T **
10877782-C-CCACTCCATTT **
13462292-C-A 11306616-C-A **
21211272-G-A 19049386-G-A FGC27381 **
16471681-C-A 14359801-C-A F20722 **
7128221-G-A 7260180-G-A **
9822901-A-C 9985292-A-C E306 **
21946433-G-A 19784547-G-A 11×A**
13923059-A-G 11802353-A-G **
14703441-A-G 12591507-A-G **
20280142-TC-T 18118256-TC-T P5_Dst **
4527905-C-A 4659864-C-A **
16945424-A-G 14833544-A-G **
17788682-T-C 15676802-T-C **
17798310-A-G 15686430-A-G **
19842167-A-G 17730287-A-G P5_Prx **
21651854-G-T 19489968-G-T **
22427349-TC-T 20265463-TC-T DYZ19 **
23004501-G-A 20842615-G-A **
23802299-A-G 21640413-A-G **
26377389-A-G 24231242-A-G P1_Y1 **
13394061-A-G 11238385-A-G PR4983 **
13255261-C-A 11099585-C-A **
11664920-C-A **
16702304-C-A 14590424-C-A **
28715136-C-A 26568989-C-A **
10776082-C-CTATAT **
7116049-C-A 7248008-C-A **
4473487-G-T 4605446-G-T **
35837-C-A **
14225780-C-A 12105074-C-A **
56850707-G-T **
9125549-T-C **
21946409-C-A 19784523-C-A **
10757429-G-T **
10749349-T-C **
11642951-C-A **
16602706-C-A 14490826-C-A **
19201035-C-A 17089155-C-A **
17297193-C-A 15185313-C-A **
10686045-C-A **
14054933-C-A 11934227-C-A **
9201282-C-A 9363673-C-A **
8738833-C-A 8870792-C-A **
28659966-C-A 26513819-C-A **
15193525-C-A 13081611-C-A **
10776153-T-TGCA **
5755944-G-T 5887903-G-T **
3598982-T-C 3730941-T-C **
2805547-AAAAAG-A 2937506-AAAAAG-A **
3696551-G-T 3828510-G-T **
7391234-G-A 7523193-G-A **
8481892-T-G 8613851-T-G **
8379290-C-A 8511249-C-A **
8371861-C-A 8503820-C-A **
8160238-C-A 8292197-C-A **
8124981-A-G 8256940-A-G **
8056224-C-A 8188183-C-A **
8002368-T-A 8134327-T-A **
7896619-C-T 8028578-C-T **
7824709-C-A 7956668-C-A **
7346344-C-A 7478303-C-A **
8705908-C-A 8837867-C-A **
7331186-C-A 7463145-C-A **
3762959-T-C 3894918-T-C **
7306784-C-A 7438743-C-A **
7299138-C-A 7431097-C-A **
7288203-T-A 7420162-T-A **
7231571-C-A 7363530-C-A Y23808 **
7214356-C-A 7346315-C-A **
7157110-T-C 7289069-T-C **
7099024-C-A 7230983-C-A **
8481960-C-G 8613919-C-G **
8710013-G-C 8841972-G-C **
7081200-T-A 7213159-T-A **
9689095-G-T 9851486-G-T IR3_Prx **
10664720-C-A **
10618288-C-A **
10040292-C-A 10202683-C-A **
10010680-C-A 10173071-C-A **
28731956-C-A 26585809-C-A **
9932660-C-A 10095051-C-A **
9927473-G-C 10089864-G-C **
9885061-C-A 10047452-C-A **
9865223-C-G 10027614-C-G **
9675297-A-T 9837688-A-T IR3_Prx **
8710015-A-C 8841974-A-C **
9421336-C-A 9583727-C-A **
9310658-A-G 9473049-A-G **
9125626-TG-T **
9125624-T-A **
9125618-T-C **
9125555-T-C **
9125519-C-T **
9111182-G-A **
8792913-T-C 8924872-T-C 4×CCTG**
7085258-T-C 7217217-T-C **
7316463-G-T 7448422-G-T **
7040815-G-A 7172774-G-A **
5643405-C-A 5775364-C-A **
6226042-A-C 6358001-A-C IR3_Dst **
6226038-T-C 6357997-T-C IR3_Dst **
6226034-T-C 6357993-T-C IR3_Dst **
6074569-C-A 6206528-C-A **
7033260-C-T 7165219-C-T **
5968378-C-T 6100337-C-T **
5927401-C-T 6059360-C-T **
5799875-T-G 5931834-T-G **
5799758-T-G 5931717-T-G **
5799725-A-G 5931684-A-G **
5186630-C-A 5318589-C-A **
6318807-C-T 6450766-C-T IR3_Dst **
5100399-C-G 5232358-C-G **
4872563-C-A 5004522-C-A **
4804623-C-A 4936582-C-A **
4765561-C-TT 4897520-C-TT **
4701324-G-T 4833283-G-T **
4328186-C-A 4460145-C-A **
4271642-C-A 4403601-C-A **
4111276-G-T 4243235-G-T **
4111259-G-T 4243218-G-T **
3846794-G-A 3978753-G-A **
3763013-C-G 3894972-C-G **
6226044-CT-C 6358003-CT-C IR3_Dst 13×TTCT**
6037339-C-A 6169298-C-A **
6347620-C-A 6479579-C-A **
6347749-G-T 6479708-G-T **
7020901-G-T 7152860-G-T **
7011515-A-T 7143474-A-T **
7011513-A-G 7143472-A-G **
6828453-C-T 6960412-C-T **
6734760-C-A 6866719-C-A **
6664414-G-T 6796373-G-T **
6347721-AG-A 6479680-AG-A **
6584480-G-T 6716439-G-T **
6479634-G-T 6611593-G-T **
6651334-T-C 6783293-T-C **
28694729-C-A 26548582-C-A **
6347732-A-AG 6479691-A-AG **
6347731-A-G 6479690-A-G **
6347740-A-G 6479699-A-G **
3603491-ATTTT-A 3735450-ATTTT-A 24×T***
6413855-CTTT-C,CT 6545814-CTTT-C,CT 14×T***
23291359-G-A 21129473-G-A ***
23198156-C-G 21036270-C-G ***
19555496-CT-C,CTT 17443616-CT-C,CTT 11×T***
16427134-A-G 14315254-A-G ***
28540145-TG-T 26393998-TG-T ***
15689973-T-A 13578093-T-A ***
14570756-ATTTT-A,AT 12458956-ATTTT-A,AT 22×T***
21348638-C-A 19186752-C-A ***
28792453-G-T 26646306-G-T ***
15689972-T-A 13578092-T-A ***
23004683-C-T 20842797-C-T ***
7164270-A-C 7296229-A-C ***
6757127-C-G 6889086-C-G ***
21118158-TACACAC-T,TAC 18956272-TACACAC-T,TAC 22×AC***
16786034-G-C 14674154-G-C ***
3646872-CA-C,CAA 3778831-CA-C,CAA 15×A***
15560329-T-A 13448449-T-A ***
15548847-G-GACACAC 13436967-G-GACACAC 18×AC***
15164605-T-G 13052691-T-G ***
4017540-T-C 4149499-T-C ***
13965269-CAAAAAA-C 11844563-CAAAAAA-C 21×A***
4410860-C-T 4542819-C-T ***
8774716-TTGTG-T,TTG 8906675-TTGTG-T,TTG 17×TG***
8090654-T-C 8222613-T-C ***
7164467-CAA-C,CAAA 7296426-CAA-C,CAAA 24×A***
13488123-G-C 11332447-G-C ***
17037472-T-C 14925592-T-C ***
27791917-T-G 25645770-T-G P1_Y2 ***
28640575-C-A 26494428-C-A ***
27127747-CTTTCTTTCTT-C 24981600-CTTTCTTTCTT-C P1_g3 ***
20698169-G-T 18536283-G-T P4_Prx ***
24841410-G-GTT 22695263-G-GTT P3_b2 ***
25200863-G-GAC 23054716-G-GAC g1 ***
25280367-CTTT-C 23134220-CTTT-C P2_r1 26×T***
25803150-GTA-G 23657003-GTA-G P1_b3 ***
26024548-C-T 23878401-C-T P1_Y1 17×T***
58972974-C-CATTCGATTCCATTCCATTCG 56826827-C-CATTCGATTCCATTCCATTCG ***
16531083-C-CAA 14419203-C-CAA 24×A***
58975664-T-TTCCATTCCATTCCAG 56829517-T-TTCCATTCCATTCCAG ***
13280054-T-C 11124378-T-C ***
18398190-CACATAT-C 16286310-CACATAT-C P6_Gap ***
13292456-C-T 11136780-C-T ***
15507539-AACAC-A,AAC 13395659-AACAC-A,AAC 16×AC***
19293770-CAA-C 17181890-CAA-C 29×A***
2729648-CTTTTT-C 2861607-CTTTTT-C 25×T***
17459513-C-A 15347633-C-A ***
13728531-AATTGAATGTC-A,AATGGAATGGC 11572855-AATTGAATGTC-A,AATGGAATGGC ***
56844309-G-T ***
13455954-CACTCA-C 11300278-CACTCA-C ***
13860122-A-G 11739416-A-G ***
13451161-T-A 11295485-T-A ***
21148624-G-A 18986738-G-A FT48368 ***
28253523-ACCAATG-A 26107376-ACCAATG-A P1_b4 ***
13846221-G-A 11725515-G-A ***
21148628-G-A 18986742-G-A ***
9978139-A-T 10140530-A-T ***
13718706-G-GAATCGAATGGAATGT 11563030-G-GAATCGAATGGAATGT ***
7485256-C-CTT 7617215-C-CTT IR1_L 23×T***
8791650-C-A 8923609-C-A ***
9978135-G-A 10140526-G-A ***
13325675-AGTGT-A 11169999-AGTGT-A 11×GT***
13455105-CACCCT-C 11299429-CACCCT-C ***
13455516-TTCCGTTCCAA-T 11299840-TTCCGTTCCAA-T ***
13457948-TTCCAC-T 11302272-TTCCAC-T 5×TCCAC***
9524257-T-TTA 9686648-T-TTA ***
10671099-G-T ***
23742148-C-A 21580262-C-A ***
15416886-TAAA-T 13305006-TAAA-T 11×A***
14052089-C-A 11931383-C-A ***
14170816-CAAAA-C 12050110-CAAAA-C 15×A***
14186895-G-A 12066189-G-A ***
14316186-CTTT-C,CT 12195480-CTTT-C,CT 14×T***
14385246-TG-T 12264542-TG-T ***
15411215-C-A 13299335-C-A ***
15532632-C-A 13420752-C-A A15086 ***
13855550-G-C 11734844-G-C ***
16427396-T-C 14315516-T-C ***
17020538-C-A 14908658-C-A ***
18802027-C-CA,CAA 16690147-C-CA,CAA 16×A***
19162123-C-T 17050243-C-T ***
19415187-T-C 17303307-T-C ***
19461880-G-T 17350000-G-T ***
22023220-TTG-G,TT 19861334-TTG-G,TT ***
13988852-C-A 11868146-C-A ***
11668646-A-G ***
15865892-C-A 13754012-C-A ***
7765606-C-A 7897565-C-A ***
9453893-C-T 9616284-C-T ***
9453897-G-A 9616288-G-A ***
9453899-G-T 9616290-G-T ***
2700082-C-A 2832041-C-A ***
4504923-G-T 4636882-G-T ***
7534405-TG-G,TT 7666364-TG-G,TT ***
7723012-C-A 7854971-C-A ***
8049705-C-A 8181664-C-A ***
13709286-T-G 11553610-T-G ***
8102625-C-A 8234584-C-A ***
10683331-C-A ***
10781272-T-A ***
10861223-T-C ***
10946643-C-A ***
13825276-T-A 11704570-T-A ***
13264376-G-A 11108700-G-A ***
14599-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 526691046310975253247588099
Kit: f52669963033278371837736052
Kit: 526691472357692370698224838
Used in age calculations1472357692370698224838
Counts of SNPs43
Variant counts last updated 2019-07-19 22:23:03.



Big Tree Main Page