McCoy

FTDNA: 95886, BigY3: 95886, BigY2: 95886
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > S699 > S756 > Z16328 > FGC32449 > FGC45274 > ~22261318-T-G > A3262 > A30 > A35

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
95886		BigY3
95886		BigY2
95886
26053532-G-GT 23907385-G-GT P1_Y1 9×TA*
5773410-A-AT 5905369-A-AT 10×TA*
56826684-A-C A*
9523684-T-C 9686075-T-C Y134046 +++
17919985-A-G 15808105-A-G Y134044 YY+++
23207189-GTT-G 21045303-GTT-G 14×T*
13854431-C-T 11733725-C-T **
13868790-C-G 11748084-C-G **
58912903-CTTTGG-C 56677962-TCCAAA-T **
7014317-G-T 7146276-G-T ****
14366724-G-A 12246019-G-A CTS2566 M1096 ****
15922031-G-A 13810151-G-A PR5671 **
21238206-T-C 19076320-T-C PF1026 ****
28149734-T-C 26003587-T-C P1_b4 **
17023469-A-T 14911589-A-T **
7534661-G-A 7666620-G-A **
22307089-A-G 20145203-A-G DYZ19 **
28591210-A-C 26445063-A-C **
28600498-T-C 26454351-T-C **
13858351-G-A 11737645-G-A FT387091 **
58912803-G-T 56678068-C-A **
4428078-A-G 4560037-A-G **
7087861-C-T 7219820-C-T **
16968150-C-CAA 14856270-C-CAA 26×A**
19431484-G-T 17319604-G-T **
21836738-CTTTT-C 19674852-CTTTT-C 15×T**
13469654-T-C 11313978-T-C **
14311963-A-G 12191257-A-G **
14311967-A-C 12191261-A-C **
18354219-A-G 16242339-A-G P6_Prx **
13971577-G-A 11850871-G-A **
6786911-ATTTTTT-A 6918870-ATTTTTT-A 17×T**
15866724-C-A 13754844-C-A **
15957896-C-A 13846016-C-A **
13478178-T-A 11322502-T-A **
13482068-A-T 11326392-A-T **
10896385-A-T **
10958533-T-TATCAG **
10958537-A-G **
17159020-A-C 15047140-A-C **
10892580-T-A **
56763501-G-T **
10755412-C-A **
13878497-G-A 11757791-G-A FTB71313 **
13824562-C-A 11703856-C-A **
28812312-C-A 26666165-C-A **
28812323-T-C 26666176-T-C **
7048047-C-A 7180006-C-A **
19020083-C-A 16908203-C-A **
10959020-G-C **
23442718-C-T 21280832-C-T **
7299256-T-C 7431215-T-C **
20774943-A-G 18613057-A-G P4_Prx **
15583535-C-T 13471655-C-T **
10971972-C-A **
15946597-C-A 13834717-C-A **
10971881-G-A **
10971893-A-T **
10864653-G-T **
22857789-C-A 20695903-C-A **
22314775-T-C 20152889-T-C DYZ19 **
10924502-G-T **
10664788-T-C **
18730950-C-A 16619070-C-A **
7864060-C-A 7996019-C-A **
6816609-C-A 6948568-C-A **
22366314-C-A 20204428-C-A DYZ19 **
14006650-C-A 11885944-C-A **
10666946-T-A **
10666930-A-C **
20500942-GAAA-G 18339056-GAAA-G P5_Dst 15×A**
10755426-C-G **
14367692-C-A 12246988-C-A **
18850440-C-A 16738560-C-A **
28775421-C-A 26629274-C-A **
7106420-A-G 7238379-A-G **
19528356-C-A 17416476-C-A **
11022984-C-T **
10959045-G-C **
11015005-T-C FT354105 **
17244309-G-T 15132429-G-T **
10896355-C-G **
8704287-A-G 8836246-A-G **
26118892-C-A 23972745-C-A P1_Y1 **
23955099-C-A 21808952-C-A **
15420073-C-T 13308193-C-T **
10983570-C-A **
14515096-G-A 12403301-G-A **
14714834-C-A 12602901-C-A **
10996287-G-T **
28661663-C-A 26515516-C-A **
10896359-A-G **
3501035-C-A 3632994-C-A **
27902197-CT-C 25756050-CT-C P1_Y2 34×T**
2773463-G-T 2905422-G-T **
10894315-G-C **
19842048-CA-C 17730168-CA-C P5_Prx 9×A**
7038436-C-A 7170395-C-A FTB57501 **
14213196-C-A 12092490-C-A **
10664829-C-A **
18937565-A-G 16825685-A-G **
13325366-C-A 11169690-C-A **
15700339-C-A 13588459-C-A **
23276476-C-A 21114590-C-A **
10988877-T-C **
8140525-C-A 8272484-C-A **
8718327-C-A 8850286-C-A **
17128579-C-A 15016699-C-A **
6293390-T-C 6425349-T-C IR3_Dst **
2719094-C-T 2851053-C-T **
2729764-T-C 2861723-T-C **
2729766-C-T 2861725-C-T **
2729775-T-G 2861734-T-G **
2729778-T-TC 2861737-T-TC **
2729789-G-T 2861748-G-T **
2745172-C-A 2877131-C-A **
2775333-T-C 2907292-T-C **
2775360-AGG-A 2907319-AGG-A **
2775368-C-T 2907327-C-T FT200189 **
2775373-A-G 2907332-A-G **
2775374-C-T 2907333-C-T **
2775394-A-G 2907353-A-G **
2775396-A-G 2907355-A-G **
2813752-A-G 2945711-A-G **
2845207-G-A 2977166-G-A **
3061093-C-A 3193052-C-A **
3092104-C-G 3224063-C-G **
3271199-G-T 3403158-G-T **
3343242-C-G 3475201-C-G **
3367092-T-C 3499051-T-C **
3385176-C-A 3517135-C-A **
3403601-A-G 3535560-A-G **
3498953-G-C 3630912-G-C **
3592512-A-G 3724471-A-G **
3592536-C-T 3724495-C-T **
3630481-G-T 3762440-G-T **
3640242-C-A 3772201-C-A **
3656227-G-T 3788186-G-T **
3726319-C-A 3858278-C-A **
3815159-C-T 3947118-C-T FT225710 **
3852283-C-A 3984242-C-A **
3876021-C-A 4007980-C-A **
3951383-T-C 4083342-T-C **
3995246-A-T 4127205-A-T **
4049629-C-A 4181588-C-A **
4065330-C-A 4197289-C-A **
4139518-G-T 4271477-G-T **
4215715-G-T 4347674-G-T **
4249749-T-C 4381708-T-C **
4302834-T-C 4434793-T-C **
4416884-A-AAC 4548843-A-AAC **
4444870-G-T 4576829-G-T **
4448976-G-T 4580935-G-T **
4560755-C-A 4692714-C-A **
4626199-C-A 4758158-C-A **
4700922-G-A 4832881-G-A **
4700941-G-T 4832900-G-T **
4700956-A-C 4832915-A-C **
4700964-A-G 4832923-A-G **
4700980-G-A 4832939-G-A **
4735884-G-T 4867843-G-T **
4746696-CA-C 4878655-CA-C **
4781183-T-C 4913142-T-C **
4824772-C-T 4956731-C-T **
4873847-CT-C 5005806-CT-C **
4899638-G-T 5031597-G-T **
4918758-C-A 5050717-C-A **
4919397-T-C 5051356-T-C FT98931 **
4920088-C-A 5052047-C-A **
4928891-G-A 5060850-G-A FT211512 **
4928928-C-T 5060887-C-T **
4928929-A-G 5060888-A-G **
4928930-A-G 5060889-A-G **
4977192-G-T 5109151-G-T **
4990002-G-T 5121961-G-T **
5092944-G-T 5224903-G-T **
5241215-C-T 5373174-C-T **
5281916-G-T 5413875-G-T **
5293861-C-A 5425820-C-A **
5301960-G-T 5433919-G-T **
5367034-C-T 5498993-C-T **
5367034-CAA-C 5498993-CAA-C **
5367041-A-T 5499000-A-T **
5418487-T-A 5550446-T-A **
5418506-T-G 5550465-T-G **
5454702-C-A 5586661-C-A **
5496774-T-C 5628733-T-C **
5535174-T-C 5667133-T-C **
5621714-C-G 5753673-C-G **
5645082-C-A 5777041-C-A **
5770046-G-T 5902005-G-T **
5775581-C-A 5907540-C-A **
5816638-C-A 5948597-C-A **
5829799-C-A 5961758-C-A **
5960727-G-TT 6092686-G-TT **
6130907-G-T 6262866-G-T **
6191277-G-C 6323236-G-C IR3_Dst **
6240993-A-AC 6372952-A-AC IR3_Dst **
6277360-G-GCACA 6409319-G-GCACA IR3_Dst **
6330233-C-CCAT 6462192-C-CCAT IR3_Dst **
6368835-T-C 6500794-T-C **
6458267-C-A 6590226-C-A **
6458279-A-G 6590238-A-G **
6582810-C-A 6714769-C-A **
6596337-C-A 6728296-C-A **
6637179-C-A 6769138-C-A **
6692383-G-T 6824342-G-T **
6744667-A-G 6876626-A-G **
6791735-T-G 6923694-T-G **
6791753-T-G 6923712-T-G **
6798787-A-C 6930746-A-C **
6832063-C-A 6964022-C-A **
6874607-G-A 7006566-G-A **
6874613-C-G 7006572-C-G **
6875624-T-G 7007583-T-G **
6911523-C-A 7043482-C-A **
6944939-A-G 7076898-A-G **
6948305-C-A 7080264-C-A **
6977005-T-C 7108964-T-C **
6977520-C-A 7109479-C-A **
7004138-A-C 7136097-A-C **
7013471-A-C 7145430-A-C **
7014687-C-CAG 7146646-C-CAG **
7018025-TA-T 7149984-TA-T **
7029694-C-A 7161653-C-A **
7061151-T-C 7193110-T-C **
7085363-C-A 7217322-C-A **
7091294-C-A 7223253-C-A **
7093106-G-A 7225065-G-A **
7093116-C-G 7225075-C-G FGC13121 **
7093119-C-T 7225078-C-T **
7115506-C-T 7247465-C-T **
7141962-C-G 7273921-C-G **
7142593-GC-G 7274552-GC-G **
7153869-C-G 7285828-C-G **
7156987-C-A 7288946-C-A **
7172316-T-C 7304275-T-C **
7172617-C-A 7304576-C-A **
7183998-C-T 7315957-C-T **
7186673-T-C 7318632-T-C **
7222900-C-A 7354859-C-A **
7237424-C-A 7369383-C-A **
7257012-G-T 7388971-G-T **
7274993-G-A 7406952-G-A **
7299244-A-T 7431203-A-T **
7354729-C-A 7486688-C-A **
7360152-A-T 7492111-A-T **
7409445-C-A 7541404-C-A **
7411496-T-G 7543455-T-G **
7427896-G-A 7559855-G-A **
7524623-T-C 7656582-T-C **
7649093-T-C 7781052-T-C **
7657019-C-A 7788978-C-A **
7664779-C-A 7796738-C-A **
7756783-T-A 7888742-T-A **
7758297-C-G 7890256-C-G **
7918096-G-C 8050055-G-C **
7918122-A-G 8050081-A-G **
8036031-C-A 8167990-C-A **
8092112-G-A 8224071-G-A M6094 **
8100586-C-A 8232545-C-A **
8130476-G-T 8262435-G-T **
8159462-C-A 8291421-C-A **
8253655-T-C 8385614-T-C **
8253658-G-A 8385617-G-A FT221693 **
8253663-T-C 8385622-T-C **
8253703-G-C 8385662-G-C **
8270163-C-A 8402122-C-A **
8369882-C-A 8501841-C-A **
8673202-T-G 8805161-T-G **
8723639-C-A 8855598-C-A **
8737854-C-A 8869813-C-A **
8811304-T-C 8943263-T-C **
8824230-T-C 8956189-T-C **
8824248-T-A 8956207-T-A **
8824250-T-C 8956209-T-C **
8824251-G-C 8956210-G-C **
8827265-G-T 8959224-G-T **
8879594-G-A 9011553-G-A **
8902082-C-A 9034041-C-A **
8914730-G-T 9046689-G-T **
9048674-C-A 9211065-C-A **
9074077-C-A 9236468-C-A **
9320420-G-A 9482811-G-A **
9430555-T-A 9592946-T-A **
9442179-T-C 9604570-T-C **
9442191-C-T 9604582-C-T **
9442193-A-G 9604584-A-G **
9442196-C-T 9604587-C-T **
9442197-A-G 9604588-A-G **
9618275-G-T 9780666-G-T IR3_Prx **
9761161-T-A 9923552-T-A **
9765827-C-A 9928218-C-A **
9952871-T-C 10115262-T-C **
9955324-T-G 10117715-T-G **
9979005-C-A 10141396-C-A **
9993541-C-A 10155932-C-A **
10012866-T-C 10175257-T-C **
10013638-C-A 10176029-C-A **
10018299-C-A 10180690-C-A **
10033237-T-C 10195628-T-C **
10033247-G-T 10195638-G-T **
10034453-C-A 10196844-C-A **
10039992-G-T 10202383-G-T **
10659042-G-T **
10659354-C-A **
10664793-T-C **
10664800-C-T **
10670796-C-T **
10673489-C-A **
10673648-C-G **
10673654-G-A **
10673668-G-A **
10673680-G-T **
10673722-C-CCAGTG **
10673735-G-C **
10673742-T-C **
10685796-C-G **
10685798-A-ACACGGG **
10685800-TC-T **
10685811-C-A **
10755961-C-T **
10755967-T-C **
10755973-T-C **
10781703-T-G **
10787893-A-T **
10804025-C-G FT431937 **
10827312-C-A **
10827313-A-C **
10827317-A-C **
10827325-C-T **
10827330-T-A **
10831022-C-A **
10833067-C-A **
10833104-A-C **
10838673-C-A **
10850850-T-C **
10850853-T-C FT252871 **
10850860-A-C **
10850866-T-A **
10873112-C-G **
10894293-A-AT **
10894312-T-A **
10894317-T-A **
10924504-C-G **
10924516-C-T **
10924517-C-G **
10924519-C-G FT436706 **
10935754-C-A **
10958447-G-T **
10971975-T-TC **
10985397-T-A **
10987456-T-C **
10987461-T-C **
10989242-T-A **
10990086-TACTCCACTCCACTCC-T **
10996271-T-TACGG **
10996273-T-TG **
10996278-T-C **
10996297-G-C FT219267 **
11001535-A-T **
11015036-G-A **
11015050-C-CTTTCATTTCA **
11017493-C-A **
11018238-C-A **
11022956-CCACT-C **
11022982-C-T **
11025986-T-A **
11029864-ACTCTG-A **
11029882-G-C **
11029883-T-C FT344896 **
11029889-T-A **
11033836-C-A **
13198786-C-A 11043110-C-A **
13208187-C-T 11052511-C-T **
13214864-A-G 11059188-A-G **
13214883-T-C 11059207-T-C **
13214887-A-G 11059211-A-G **
13214894-A-G 11059218-A-G **
13214920-C-A 11059244-C-A **
13214926-G-A 11059250-G-A **
13222014-G-A 11066338-G-A FT441181 **
13226611-C-A 11070935-C-A **
13230376-C-A 11074700-C-A **
13237539-A-T 11081863-A-T **
13456074-C-T 11300398-C-T **
13463541-C-G 11307865-C-G **
13469648-T-G 11313972-T-G **
13469658-G-A 11313982-G-A **
13478180-C-T 11322504-C-T **
13482147-G-T 11326471-G-T **
13485662-C-A 11329986-C-A **
13520843-C-G 11365167-C-G **
13554224-C-A 11398548-C-A **
13571601-C-A 11415925-C-A **
13596509-C-A 11440833-C-A **
13597362-G-T 11441686-G-T **
13601881-T-G 11446205-T-G **
13604037-G-T 11448361-G-T **
13643545-C-A 11487869-C-A **
13659579-A-C 11503903-A-C **
13714089-A-C 11558413-A-C **
11644805-A-G **
11647917-A-T **
11647918-A-C **
11655404-A-G **
11655808-T-A **
11670911-A-T **
11676305-T-C **
11676311-T-G FT451418 **
11676326-T-G **
11676386-G-T **
13798625-A-G 11677919-A-G **
13845339-G-C 11724633-G-C **
13845348-A-C 11724642-A-C **
13865606-A-C 11744900-A-C **
13866742-A-G 11746036-A-G **
13874566-G-A 11753860-G-A **
13882962-AT-A 11762256-AT-A **
13941039-A-T 11820333-A-T **
13944563-A-G 11823857-A-G **
13944608-C-T 11823902-C-T **
13944675-C-A 11823969-C-A **
13945238-A-C 11824532-A-C **
13957200-T-A 11836494-T-A **
13973224-C-A 11852518-C-A **
13988936-C-A 11868230-C-A **
14020238-A-C 11899532-A-C **
14027072-T-C 11906366-T-C **
14050742-T-C 11930036-T-C **
14088266-A-G 11967560-A-G **
14088749-C-A 11968043-C-A **
14101004-G-A 11980298-G-A **
14121305-T-C 12000599-T-C **
14146965-C-A 12026259-C-A **
14195790-G-A 12075084-G-A **
14255103-C-T 12134397-C-T **
14257933-T-C 12137227-T-C **
14344926-G-T 12224221-G-T **
14391577-A-G 12270873-A-G **
14463470-A-G 12342743-A-G **
14528356-A-G 12416557-A-G **
14556243-T-C 12444444-T-C **
14575863-G-A 12464063-G-A **
14585750-G-T 12473950-G-T **
14592145-A-G 12480345-A-G **
14701209-A-G 12589275-A-G **
14714707-T-C 12602774-T-C **
14719606-G-T 12607674-G-T **
14766775-A-G 12654844-A-G **
14779577-T-A 12667647-T-A **
14799981-C-T 12688052-C-T **
14802794-C-G 12690865-C-G **
14823803-C-A 12711870-C-A **
14916797-AG-A 12804864-AG-A **
14916805-C-T 12804872-C-T **
14916807-C-T 12804874-C-T **
14916808-T-A 12804875-T-A **
14916813-A-C 12804880-A-C **
14916816-G-A 12804883-G-A FT21698 **
12807338-CTTTTTTTTTTT-C 43×T**
14933485-G-T 12821550-G-T **
15084602-T-G 12972692-T-G **
15126963-T-C 13015050-T-C **
15172718-C-A 13060804-C-A **
15202387-G-A 13090473-G-A **
15202388-G-C 13090474-G-C **
15258512-C-A 13146596-C-A **
15302585-T-C 13190684-T-C **
15346888-C-A 13235007-C-A **
15370262-G-T 13258382-G-T **
15386435-A-G 13274555-A-G **
15410582-C-A 13298702-C-A **
15410623-G-A 13298743-G-A **
15420061-A-G 13308181-A-G **
15420067-C-T 13308187-C-T **
15420068-A-G 13308188-A-G **
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56852748-T-G **
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13460784-C-T 11305108-C-T **
17795936-C-T 15684056-C-T **
17924367-T-C 15812487-T-C **
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20519030-A-AG 18357144-A-AG P5_Dst **
22052181-T-C 19890295-T-C **
23050443-A-G 20888557-A-G **
13459586-ATTGCGTTCCATTTCT-A 11303910-ATTGCGTTCCATTTCT-A ***
13813412-C-A 11692706-C-A ***
13813414-A-G 11692708-A-G ***
13813421-G-C 11692715-G-C ***
13813439-G-A 11692733-G-A ***
13813466-C-G 11692760-C-G ***
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13850214-C-A 11729508-C-A ***
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13445705-C-T 11290029-C-T ***
13664816-A-G 11509140-A-G ***
13664836-T-A,G 11509160-T-A,G ***
13833430-T-A,G 11712724-T-A,G ***
13477316-CG-A 11321640-CG-A ***
13686953-G-A 11531277-G-A ***
13866806-C-A 11746100-C-A ***
13868060-C-G 11747354-C-G ***
26100509-GTT-G 23954362-GTT-G P1_Y1 35×T***
19868145-CT-C 17756265-CT-C P5_Prx 31×T***
28785575-A-T 26639428-A-T ***
58819398-G-C 56771473-C-G ***
13801300-A-T 11680594-A-T ***
13838244-A-G 11717538-A-G ***
13868323-C-A 11747617-C-A ***
13868508-C-A 11747802-C-A ***
28785655-T-C 26639508-T-C ***
58982978-T-C 56836831-T-C ***
13453203-T-C 11297527-T-C ***
24959696-C-CT 22813549-C-CT g1 11×T***
13452613-T-C 11296937-T-C ***
13866814-A-G 11746108-A-G ***
13815412-T-C 11694706-T-C ***
13461120-C-A 11305444-C-A ***
13845538-G-A 11724832-G-A ***
58830512-C-T 56760359-G-A ***
13838257-G-A 11717551-G-A FT228786 ***
13862658-TG-T 11741952-TG-T ***
13862661-A-C 11741955-A-C ***
25176850-C-CT 23030703-C-CT g1 30×T***
13140281-C-A 10629767-C-A ***
13813479-T-C 11692773-T-C ***
13467010-C-A 11311334-C-A ***
13467011-A-G 11311335-A-G ***
13459203-T-C 11303527-T-C ***
13676755-C-G 11521079-C-G ***
13838280-T-A 11717574-T-A FT146239 ***
13838291-G-A 11717585-G-A ***
28785667-GAGAGT-G 26639520-GAGAGT-G ***
13447701-T-C 11292025-T-C ***
13838224-A-C 11717518-A-C ***
20043379-G-GT 17931499-G-GT P5_Prx 10×T***
13451194-T-C 11295518-T-C ***
13664364-T-G 11508688-T-G ***
13664553-G-T 11508877-G-T ***
58844538-C-T 56746333-G-A ***
13854394-A-C 11733688-A-C ***
13456013-CGTGTT-C 11300337-CGTGTT-C ***
13711048-T-A 11555372-T-A ***
13868500-A-G 11747794-A-G ***
58912817-T-C 56678054-A-G ***
13142028-T-C 10631514-T-C ***
13838237-G-A 11717531-G-A ***
13711050-C-G 11555374-C-G ***
13461137-G-A 11305461-G-A ***
9944034-T-A 10106425-T-A ***
13846440-TG-T 11725734-TG-T ***
13664783-T-A,G 11509107-T-A,G ***
13855501-G-T 11734795-G-T ***
17599102-T-C 15487222-T-C V167 FTA11940 ***
6402307-T-C 6534266-T-C ***
9160320-AACAC-A 9322711-AACAC-A 17×AC***
10024175-G-C 10186566-G-C ***
13141832-T-A 10631318-T-A ***
13142038-C-T 10631524-C-T ***
13447726-C-T 11292050-C-T ***
13448640-ATTCCATTCCATTCCATTCCATTCCAT-A 11292964-ATTCCATTCCATTCCATTCCATTCCAT-A ***
13459206-CATTCCAACTG-C 11303530-CATTCCAACTG-C ***
13676615-A-G,T 11520939-A-G,T ***
13748551-T-C 11592875-T-C ***
13748553-GACCCT-G 11592877-GACCCT-G ***
13838347-A-G 11717641-A-G ***
13855515-G-A 11734809-G-A ***
22309582-G-A 20147696-G-A DYZ19 ***
22348269-C-T 20186383-C-T DYZ19 ***
22452123-G-C 20290237-G-C DYZ19 ***
22503087-GATTTT-G 20341201-GATTTT-G DYZ19 ***
25812602-C-CT 23666455-C-CT P1_b3 9×T***
58976764-C-T 56830617-C-T ***
21205186-A-G 19043300-A-G ***
13853097-CAAATG-C 11732391-CAAATG-C ***
16108702-CT-C 13996822-CT-C P8_Prx 10×TTTCT***
14203018-CAT-C 12082312-CAT-C ***
7359791-AATAT-A 7491750-AATAT-A 12×AT***
13474745-C-A 11319069-C-A ***
17387294-G-A 15275414-G-A BY114342 12×TA***
13857398-C-A 11736692-C-A ***
7988099-CTTT-C 8120058-CTTT-C 14×T***
21451892-A-G 19290006-A-G ***
13452843-CTCCTCCTT-C,T 11297167-CTCCTCCTT-C,T ***
13866055-C-A,G 11745349-C-A,G ***
6402278-C-A,G 6534237-C-A,G ***
2950223-G-GTA 3082182-G-GTA 10×TA***
14771649-CTT-C,CT 12659718-CTT-C,CT 17×T***
56832703-C-G,T ***
18934073-TA-T 16822193-TA-T 9×A***
10659236-T-A ***
18564316-CTTTT-C 16452436-CTTTT-C 19×T***
7360196-C-A 7492155-C-A ***
24013847-CTATA-C,CTA 21867700-CTATA-C,CTA 21×TA***
24472421-GTTTTTT-G 22326274-GTTTTTT-G 25×T***
13212757-C-A 11057081-C-A ***
9735605-GT-G 9897996-GT-G IR3_Prx 30×T***
13469049-A-T 11313373-A-T ***
14109316-CT-C,CTT 11988610-CT-C,CTT 14×T***
10776004-G-A ***
14549309-CAA-C,CA 12437510-CAA-C,CA 16×A***
9424615-G-A 9587006-G-A ***
10894696-C-A ***
14549515-C-A 12437716-C-A ***
23007401-G-T 20845515-G-T ***
10670998-C-CTCCAT ***
7723948-CTTTT-C 7855907-CTTTT-C 25×T***
16967-C-A ***
10973947-C-A ***
10659230-T-C ***
2844149-GTTTT-G 2976108-GTTTT-G 16×T***
2948159-T-C 3080118-T-C ***
3550569-CAACTCA-C,CAAAA 3682528-CAACTCA-C,CAAAA ***
4064046-A-G 4196005-A-G ***
4241524-C-T 4373483-C-T ***
4503133-G-T 4635092-G-T ***
5199778-T-C 5331737-T-C ***
5317153-C-A 5449112-C-A ***
6996508-C-A 7128467-C-A ***
7641938-C-A 7773897-C-A ***
8069959-ATTT-A,ATTTT 8201918-ATTT-A,ATTTT 19×T***
8913481-G-T 9045440-G-T ***
10776020-C-GGG ***
10973948-C-A ***
11014239-T-C BY49101 ***
13404616-T-C 11248940-T-C ***
13473961-C-A 11318285-C-A ***
13474759-G-T 11319083-G-T ***
13480268-A-G 11324592-A-G ***
13482679-C-A 11327003-C-A ***
13485890-CCCA-C 11330214-CCCA-C ***
11649462-GGAATA-G ***
11649482-T-G ***
11649484-G-A ***
11649493-A-G ***
14000650-G-A 11879944-G-A ***
14017741-G-A 11897035-G-A ***
14043709-C-A 11923003-C-A ***
14046891-C-A 11926185-C-A ***
14938269-A-G 12826344-A-G ***
15335967-C-T 13224085-C-T ***
15479942-CTTT-C,CTTTT 13368062-CTTT-C,CTTTT 21×T***
15936691-T-C 13824811-T-C ***
16457361-C-A 14345481-C-A ***
16824914-C-A 14713034-C-A ***
16874690-C-A 14762810-C-A ***
17414721-C-A 15302841-C-A ***
17850233-G-T 15738353-G-T ***
18401469-C-A 16289589-C-A P6_Gap ***
18847867-T-C 16735987-T-C ***
18871824-G-A 16759944-G-A ***
19318372-G-A 17206492-G-A ***
19453778-C-A 17341898-C-A ***
21370874-C-A 19208988-C-A ***
21921894-T-C 19760008-T-C ***
21930849-C-A 19768963-C-A ***
22171592-G-T 20009706-G-T ***
22699103-C-A 20537217-C-A ***
22743424-G-A 20581538-G-A ***
22890089-C-A 20728203-C-A ***
23325574-G-A 21163688-G-A ***
23833084-T-C 21671198-T-C ***
28640627-A-G 26494480-A-G ***
56835084-C-A ***
7195307-CAAA-C,CAA 7327266-CAAA-C,CAA 16×A***
16354869-CAA-C,CA 14242989-CAA-C,CA 13×A***
4364429-GT-G 4496388-GT-G 12×T***
21451442-GTATA-G 19289556-GTATA-G 8×TA***
19129101-A-G 17017221-A-G ***
13207274-CTTT-C,CTT 11051598-CTTT-C,CTT 16×T***
15179986-CA-C,CAA 13068072-CA-C,CAA 15×A***
4989720-TTA-T 5121679-TTA-T ***
14769098-TG-T 12657167-TG-T ***
2833178-CTTTTT-C,CTTTT 2965137-CTTTTT-C,CTTTT 19×T***
4917601-CTTT-C,CTTTT 5049560-CTTT-C,CTTTT 16×T***
8060482-A-T 8192441-A-T ***
13530103-AT-A 11374427-AT-A ***
14222596-A-G 12101890-A-G ***
15791651-T-C 13679771-T-C ***
16818825-A-T 14706945-A-T ***
17395717-A-T 15283837-A-T ***
18266185-T-C 16154305-T-C ***
18902352-A-G 16790472-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.