Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > Z36747 > Y16487 > Y16486 > Y16490

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
27793014-A-C 25646867-A-C P1_Y2 A+
20942965-G-A 18781079-G-A P4_Dst A*
20942969-G-A 18781083-G-A P4_Dst A*
19839597-G-A 17727717-G-A P5_Prx A*
16107980-G-T 13996100-G-T P8_Prx A*
18315647-C-A 16203767-C-A P6_Prx A*
18503893-A-G 16392013-A-G P6_Dst A*
18533157-A-T 16421277-A-T P6_Dst A*
19570019-C-A 17458139-C-A P5_Prx YA*
19593750-G-T 17481870-G-T P5_Prx YA*
19645414-T-C 17533534-T-C P5_Prx A*
19879322-G-T 17767442-G-T P5_Prx A*
19967721-G-A 17855841-G-A P5_Prx A*
20110952-A-T 17999072-A-T P5_Dst A*
20111029-C-G 17999149-C-G P5_Dst A*
20334898-A-G 18173012-A-G P5_Dst A*
20426766-T-C 18264880-T-C P5_Dst A*
20548411-G-T 18386525-G-T P5_Dst A*
20747997-T-A 18586111-T-A P4_Prx A*
20748734-C-A 18586848-C-A P4_Prx A*
20781619-A-G 18619733-A-G P4_Prx A*
20917588-G-T 18755702-G-T P4_Dst A*
20946626-T-C 18784740-T-C P4_Dst A*
20279694-T-TA 18117808-T-TA P5_Dst 10×A***A*
56873802-C-G A*
13832700-G-T 11711994-G-T Y48730 ++++
22479326-A-T 20317440-A-T BY37639 DYZ19 ***+
11016212-C-T FT393760 ++
5241786-T-TACAC 5373745-T-TACAC 16×AC+*
10786415-G-A FT431155 ++
13263371-CAGC-TAGG 11107695-CAGC-TAGG *
9173477-G-A 9335868-G-A Y*
3929953-G-A 4061912-G-A *
26419432-A-G 24273285-A-G P1_Y1 *
9211360-C-CAC,G 9373751-C-CAC,G *
13214291-TT-C,CT 11058615-TT-C,CT *
16345135-C-CTCT,T 14233255-C-CTCT,T 18×TCT*
20778818-G-TGTGG,TGTGT 18616932-G-TGTGG,TGTGT P4_Prx *
56826402-GC-CCATTGT *
22268836-G-T 20106950-G-T DYZ19 **
15439962-G-C 13328082-G-C CTS4159 **
20849710-CA-C 18687824-CA-C P4_Dst 14×A**
25422190-CT-C 23276043-CT-C P2_r2 16×T**
22363618-G-T 20201732-G-T DYZ19 **
28710732-C-A 26564585-C-A **
13728980-A-G 11573304-A-G **
25890672-G-GC 23744525-G-GC FGCLR365 P1_Y1 **
28119963-T-G 25973816-T-G FGCLR370 P1_b4 **
13728325-G-T 11572649-G-T **
13476223-G-C 11320547-G-C **
22703595-CAA-C 20541709-CAA-C 30×A**
19293770-CAA-C 17181890-CAA-C 29×A**
26283209-CAA-C 24137062-CAA-C P1_Y1 21×A**
22268767-CAAGA-C 20106881-CAAGA-C DYZ19 **
22319018-GTCAAGT-TTC 20157132-GTCAAGT-TTC DYZ19 **
2651894-T-A 2783853-T-A **
2651899-TTTTG-T 2783858-TTTTG-T **
2651910-T-C 2783869-T-C **
3461938-T-A 3593897-T-A **
3847193-C-A 3979152-C-A **
4069249-G-T 4201208-G-T **
4069276-G-T 4201235-G-T **
4558567-C-A 4690526-C-A **
7081713-G-T 7213672-G-T **
7163258-C-T 7295217-C-T **
7925344-C-A 8057303-C-A **
8281682-T-G 8413641-T-G **
8690801-C-A 8822760-C-A **
9636620-G-GTA 9799011-G-GTA IR3_Prx **
9678411-T-C 9840802-T-C IR3_Prx **
9678415-T-C 9840806-T-C IR3_Prx **
10661167-C-A **
10684733-G-T **
10687058-C-A **
10895759-T-TAAATG **
10895770-C-G **
10895804-TCCGTTC-T **
10895841-C-T **
10895846-C-G **
10900823-C-T **
10926807-C-T **
10937156-G-A **
10955270-C-T **
10955291-C-T **
10972304-C-A **
11022878-A-G **
11027626-C-A **
13478255-C-A 11322579-C-A **
13478257-G-T 11322581-G-T **
11643688-G-T **
11643699-G-A **
11643730-A-AGTGGGGACG **
11643731-A-AG **
11643735-A-AT **
11643737-TG-T **
11657092-C-A **
11676587-G-A **
13804359-T-G 11683653-T-G **
13866180-G-T 11745474-G-T **
13866201-A-G 11745495-A-G **
13866205-T-G 11745499-T-G **
13919572-C-A 11798866-C-A **
14614555-C-A 12502753-C-A **
14704311-C-A 12592377-C-A **
14741989-G-T 12630057-G-T **
14741995-G-T 12630063-G-T **
14931757-C-A 12819822-C-A **
15769194-T-C 13657314-T-C **
16074520-C-A 13962640-C-A **
16624351-C-A 14512471-C-A **
16673107-C-A 14561227-C-A **
18872156-T-TTA 16760276-T-TTA 16×TTTC**
18892212-TTTTA-T 16780332-TTTTA-T **
19529460-AT-A 17417580-AT-A **
19597202-T-TTTG 17485322-T-TTTG P5_Prx 12×TTA**
19673440-T-C 17561560-T-C P5_Prx **
21283370-G-A 19121484-G-A **
21283373-T-C 19121487-T-C **
21283374-G-C 19121488-G-C **
21815042-C-A 19653156-C-A **
22209119-A-G 20047233-A-G **
22355161-G-T 20193275-G-T DYZ19 **
22355192-C-A 20193306-C-A DYZ19 **
23484448-C-A 21322562-C-A **
24212257-C-A 22066110-C-A P3_b1 **
26500474-A-T 24354327-A-T P1_Y1 **
28488117-G-T 26341970-G-T **
28527234-C-A 26381087-C-A **
28570359-C-A 26424212-C-A **
28812365-G-A 26666218-G-A **
56831462-T-G **
56843497-C-A **
16267304-A-C 14155424-A-C **
19672910-T-G 17561030-T-G P5_Prx **
21708974-A-G 19547088-A-G **
17187566-CAAAAA-C 15075686-CAAAAA-C 28×A**
27614542-C-CT 25468395-C-CT P1_Y2 18×T**
24641183-GT-G 22495036-GT-G P3_t2 12×T**
22268791-ATTAC-TTTAG 20106905-ATTAC-TTTAG DYZ19 **
20451074-G-GA 18289188-G-GA P5_Dst 10×A**
20333958-A-G 18172072-A-G P5_Dst **
20726906-A-ATTTT 18565020-A-ATTTT P4_Prx 14×T**
24348813-G-T 22202666-G-T P3_t1 **
27030492-A-G 24884345-A-G P1_r4 **
27960966-T-TA 25814819-T-TA P1_Y2 18×A**
21781258-CT-C **
27694706-AT-A 25548559-AT-A P1_Y2 28×T**
24575876-CT-C 22429729-CT-C P3_t2 24×T**
6118366-C-A 6250325-C-A **
8333699-CTTCTC-ATA 8465658-CTTCTC-ATA **
10087005-G-T 10249396-G-T **
10087606-A-T 10249997-A-T **
10088265-C-A 10250656-C-A **
10088353-C-A 10250744-C-A **
10090994-G-T 10253385-G-T **
10090999-C-A 10253390-C-A **
13986140-A-G 11865434-A-G **
14464433-T-G 12343706-T-G **
15122147-T-G 13010234-T-G **
20226623-A-T 18064737-A-T P5_Dst **
21022205-C-A 18860319-C-A P4_Dst **
21022209-C-A 18860323-C-A P4_Dst **
21328805-C-CAAA 19166919-C-CAAA 30×A**
21708981-G-A 19547095-G-A **
22255005-T-A 20093119-T-A DYZ19 **
22287946-T-A 20126060-T-A DYZ19 **
22298381-G-C 20136495-G-C FT455407 DYZ19 **
22502948-G-A 20341062-G-A DYZ19 **
22508470-CCTTG-TCTTC 20346584-CCTTG-TCTTC DYZ19 **
22510656-A-T 20348770-A-T DYZ19 **
24101909-C-G 21955762-C-G P3_b1 **
24235387-G-TT 22089240-G-TT P3_b1 29×T**
25435381-G-T 23289234-G-T P2_r2 **
27060081-ATTTC-TTTTT 24913934-ATTTC-TTTTT P1_r4 **
28388117-T-G 26241970-T-G P1_gr2 **
28388121-A-C 26241974-A-C P1_gr2 **
28398652-T-C 26252505-T-C P1_gr2 **
28411924-A-G 26265777-A-G P1_gr2 **
28457481-G-A 26311334-G-A **
25858396-GA-G 23712249-GA-G P1_Y1 22×A***
26282900-TAC-T 24136753-TAC-T P1_Y1 20×AC***
22253461-T-G 20091575-T-G BY22440 DYZ19 ***
20141149-CT-C 18029269-CT-C P5_Dst 12×T***
13484430-C-T 11328754-C-T ***
20110561-GA-G 17998681-GA-G P5_Dst 20×A***
25689959-T-TA 23543812-T-TA P1_b3 13×A***
27330022-GA-G 25183875-GA-G P1_g3 9×A***
22270517-C-T 20108631-C-T BY33254 DYZ19 ***
27271722-C-G 25125575-C-G P1_g3 ***
19753403-CTT-C 17641523-CTT-C P5_Prx 19×T***
27214639-G-A 25068492-G-A P1_g3 ***
22253480-G-T 20091594-G-T BY25028 DYZ19 ***
22253572-G-T 20091686-G-T DYZ19 ***
22447524-G-T 20285638-G-T DYZ19 ***
27368714-G-GA 25222567-G-GA P1_g3 10×A***
24577878-CAA-C 22431731-CAA-C P3_t2 25×A***
22358362-A-T 20196476-A-T DYZ19 ***
13321997-G-A 11166321-G-A ***
15866310-AAG-A 13754430-AAG-A ***
22510004-A-G 20348118-A-G DYZ19 ***
22251942-A-C 20090056-A-C DYZ19 ***
22276205-G-T 20114319-G-T DYZ19 ***
23011081-TC-T 20849195-TC-T A6904 ***
22319010-C-T 20157124-C-T DYZ19 ***
22283506-G-T 20121620-G-T DYZ19 ***
22255399-C-A 20093513-C-A DYZ19 ***
24600670-CAA-C 22454523-CAA-C P3_t2 16×A***
22249389-C-G 20087503-C-G DYZ19 ***
24605004-CTG-C 22458857-CTG-C P3_t2 ***
22444166-G-A 20282280-G-A DYZ19 ***
22253524-C-T 20091638-C-T FGC79096 DYZ19 ***
22253558-C-T 20091672-C-T DYZ19 ***
22279771-C-T 20117885-C-T DYZ19 ***
22443823-ATT-TTG 20281937-ATT-TTG DYZ19 ***
2651918-T-C 2783877-T-C ***
2651922-C-G 2783881-C-G ***
2950349-A-ATG 3082308-A-ATG ***
3696897-GA-G 3828856-GA-G 8×A***
3696928-G-T 3828887-G-T ***
4172169-C-A 4304128-C-A ***
6428067-A-G 6560026-A-G ***
6855339-CTT-C,CTTT 6987298-CTT-C,CTTT 15×T***
7947035-T-G 8078994-T-G ***
8058739-C-A 8190698-C-A ***
10661156-C-A ***
10829070-T-A ***
10916196-T-C ***
10958363-C-A ***
13226079-C-A 11070403-C-A ***
13468617-T-C 11312941-T-C ***
13470056-A-C 11314380-A-C ***
13470474-G-A 11314798-G-A ***
13489771-G-A 11334095-G-A ***
13799371-C-A 11678665-C-A ***
14181278-G-T 12060572-G-T ***
14827255-GTTTTT-G 12715322-GTTTTT-G 14×T***
14868814-A-G 12756884-A-G ***
15049436-C-A 12937527-C-A ***
15190047-ATT-A,AT 13078133-ATT-A,AT 15×T***
15620045-C-A 13508165-C-A ***
15620281-A-C 13508401-A-C ***
15865898-C-A 13754018-C-A ***
16007414-T-A 13895534-T-A ***
16007581-C-A 13895701-C-A ***
16755029-G-T 14643149-G-T ***
16755030-C-A 14643150-C-A ***
16874654-A-G 14762774-A-G ***
17077157-C-A 14965277-C-A ***
17203295-C-A 15091415-C-A ***
17962952-C-A 15851072-C-A ***
18412544-C-A 16300664-C-A FT188142 P6_Gap ***
18569844-C-A 16457964-C-A ***
18764350-A-G 16652470-A-G ***
18864861-G-A 16752981-G-A ***
19491112-C-T 17379232-C-T ***
21382396-C-A 19220510-C-A ***
21608097-G-T 19446211-G-T ***
22074040-A-G 19912154-A-G ***
22529908-C-A 20368022-C-A ***
22655488-C-A 20493602-C-A ***
22760618-C-A 20598732-C-A ***
22793197-C-T 20631311-C-T ***
23188821-C-T 21026935-C-T ***
23194842-A-T 21032956-A-T ***
22362032-T-G 20200146-T-G DYZ19 ***
6780870-CAAA-C 6912829-CAAA-C 26×A***
18959298-TAA-T,TA 16847418-TAA-T,TA 23×A***
24579779-ATG-A 22433632-ATG-A P3_t2 ***
22447572-G-C 20285686-G-C DYZ19 ***
20505042-A-T 18343156-A-T P5_Dst ***
20505049-C-A 18343163-C-A P5_Dst ***
9590558-CT-C 9752949-CT-C IR3_Prx 13×T***
27364628-G-A 25218481-G-A P1_g3 ***
25310130-C-A 23163983-C-A P2_r1 ***
25165648-C-CT 23019501-C-CT g1 22×T***
17702436-TC-T 15590556-TC-T ******
23098816-CAAA-C,CAA 20936930-CAAA-C,CAA 25×A***
13488815-CGGA-AGGC 11333139-CGGA-AGGC ***
10989125-TCCAC-ACCAT ***
27545237-A-G 25399090-A-G P1_Y2 ***
28362062-T-C 26215915-T-C P1_gr2 ***
28451922-A-G 26305775-A-G P1_gr2 ***
18438210-CAA-C 16326330-CAA-C P6_Dst 25×A***
28428522-G-A 26282375-G-A P1_gr2 ***
28452018-C-A 26305871-C-A P1_gr2 ***
27575352-CA-C 25429205-CA-C P1_Y2 13×A***
27468471-A-G 25322324-A-G P1_Y2 ***
9639094-TTGTG-T 9801485-TTGTG-T IR3_Prx 19×TG***
28351357-G-A 26205210-G-A P1_gr2 ***
6116095-C-A 6248054-C-A ***
6118048-G-T 6250007-G-T ***
6179592-ATTT-A,ATT 6311551-ATTT-A,ATT IR3_Dst 22×T***
9305272-G-A 9467663-G-A ***
9547119-C-T 9709510-C-T IR3_Prx ***
9557583-CA-C,CAA 9719974-CA-C,CAA IR3_Prx 11×A***
9562611-A-C 9725002-A-C IR3_Prx ***
9585945-A-G 9748336-A-G IR3_Prx ***
9670511-G-T 9832902-G-T IR3_Prx ***
9710863-G-T 9873254-G-T IR3_Prx ***
10088349-G-T 10250740-G-T ***
10088356-C-A 10250747-C-A ***
10674045-TATCT-AATCA,AATCT ***
13470433-CAGC-GAGT 11314757-CAGC-GAGT ***
13478283-CCG-ATC 11322607-CCG-ATC ***
13487740-CCCT-AGCCC 11332064-CCCT-AGCCC ***
13488842-TTG-ACC,GAC 11333166-TTG-ACC,GAC ***
13513848-TAAAT-AAAAA 11358172-TAAAT-AAAAA ***
13728938-A-G 11573262-A-G ***
13734721-A-T 11579045-A-T ***
12288301-C-ATT,CT 19×T***
16162501-C-T 14050621-C-T P8_Dst ***
16167355-TACAC-T,TAC 14055475-TACAC-T,TAC P8_Dst 23×AC***
18009228-A-T 15897348-A-T P7_Dst ***
18009233-A-T 15897353-A-T P7_Dst ***
19202928-CAA-C,CAAA 17091048-CAA-C,CAAA 25×A***
19868145-CTTT-C,CTT 17756265-CTTT-C,CTT P5_Prx 31×T***
20091337-T-G 17979457-T-G P5_Dst ***
20121598-T-C 18009718-T-C P5_Dst ***
20253869-GT-G,TT 18091983-GT-G,TT P5_Dst 13×T***
20290100-A-G 18128214-A-G P5_Dst ***
20295119-A-G 18133233-A-G P5_Dst ***
20319178-T-C 18157292-T-C P5_Dst ***
20361583-T-C 18199697-T-C P5_Dst ***
20386004-T-A 18224118-T-A P5_Dst ***
20388201-G-A 18226315-G-A P5_Dst ***
20446268-G-T 18284382-G-T P5_Dst ***
20453012-A-G 18291126-A-G P5_Dst ***
20479175-AT-A 18317289-AT-A P5_Dst 8×T***
20481699-A-G 18319813-A-G P5_Dst ***
20482580-A-G 18320694-A-G P5_Dst ***
20503132-CA-TG 18341246-CA-TG P5_Dst ***
20504966-TG-T 18343080-TG-T P5_Dst ***
20506230-T-C 18344344-T-C P5_Dst ***
20511500-A-G 18349614-A-G P5_Dst ***
20536819-CAA-C 18374933-CAA-C P5_Dst 11×A***
20541307-C-T 18379421-C-T P5_Dst ***
20552966-A-T 18391080-A-T P5_Dst ***
20570108-TCAG-ACAC 18408222-TCAG-ACAC P5_Dst ***
20606226-G-A 18444340-G-A P5_Dst ***
20712287-T-TACAC 18550401-T-TACAC P4_Prx 16×AC***
20723141-GT-G 18561255-GT-G P4_Prx 12×T***
20757362-ATTTT-A,ATTT 18595476-ATTTT-A,ATTT P4_Prx 32×T***
20851045-T-C 18689159-T-C P4_Dst ***
20905542-T-C 18743656-T-C P4_Dst ***
20925011-A-G 18763125-A-G P4_Dst ***
20927875-C-G 18765989-C-G P4_Dst ***
20953878-TA-T 18791992-TA-T P4_Dst 8×A***
20986108-A-T 18824222-A-T P4_Dst ***
20992104-G-T 18830218-G-T P4_Dst ***
20998901-T-C 18837015-T-C P4_Dst ***
21617605-CA-C,CAAAA 19455719-CA-C,CAAAA 23×A***
21809842-ATTATTT-A,ATTT 19647956-ATTATTT-A,ATTT ***
22253473-ACA-CCT 20091587-ACA-CCT DYZ19 ***
22255075-A-T 20093189-A-T DYZ19 ***
22255372-T-C 20093486-T-C DYZ19 ***
22255378-ATTTT-GTTTG 20093492-ATTTT-GTTTG DYZ19 ***
22255405-T-G 20093519-T-G DYZ19 ***
22255415-T-A 20093529-T-A DYZ19 ***
22270421-G-T 20108535-G-T BY214992 DYZ19 ***
22270495-G-A 20108609-G-A DYZ19 ***
22270506-G-T 20108620-G-T BY171771 DYZ19 ***
22279732-A-G 20117846-A-G DYZ19 ***
22302302-C-A 20140416-C-A DYZ19 ***
22357539-C-T 20195653-C-T DYZ19 ***
22357621-T-G 20195735-T-G DYZ19 ***
22358284-C-A 20196398-C-A DYZ19 ***
22358314-A-C 20196428-A-C DYZ19 ***
22358344-GT-TG 20196458-GT-TG DYZ19 ***
22358371-A-T 20196485-A-T DYZ19 ***
22359510-T-G 20197624-T-G DYZ19 ***
22362047-G-T 20200161-G-T DYZ19 ***
22362718-A-C 20200832-A-C DYZ19 ***
22362723-T-A 20200837-T-A DYZ19 ***
22362757-A-T 20200871-A-T DYZ19 ***
22362781-GA-TT 20200895-GA-TT DYZ19 ***
22362798-C-T 20200912-C-T DYZ19 ***
22363171-GT-AG 20201285-GT-AG DYZ19 ***
22366258-G-A 20204372-G-A DYZ19 ***
22444197-TTGGT-ATGGA 20282311-TTGGT-ATGGA DYZ19 ***
22447518-G-T 20285632-G-T DYZ19 ***
22447563-G-A 20285677-G-A DYZ19 ***
22447649-G-T 20285763-G-T DYZ19 ***
23505495-C-CA,CAAA 21343609-C-CA,CAAA 23×A***
23695160-A-C 21533274-A-C ***
21771435-T-C ***
24010003-A-G 21863856-A-G ***
24011681-A-G 21865534-A-G ***
24012672-T-C 21866525-T-C ***
24603997-G-A 22457850-G-A P3_t2 ***
24614178-CA-C 22468031-CA-C P3_t2 19×A***
24643839-T-A 22497692-T-A P3_t2 ***
25223948-T-C 23077801-T-C P2_r1 ***
25426004-T-A 23279857-T-A P2_r2 ***
25724493-A-C 23578346-A-C P1_b3 ***
25939678-T-A 23793531-T-A P1_Y1 ***
26089841-C-AA,CA 23943694-C-AA,CA P1_Y1 26×A***
26455900-CTT-C,CT 24309753-CTT-C,CT P1_Y1 22×T***
27001771-CTT-C,CT 24855624-CTT-C,CT P1_r4 24×T***
27014906-T-C 24868759-T-C P1_r4 ***
27060079-C-A 24913932-C-A P1_r4 ***
27139784-G-A 24993637-G-A P1_g3 ***
27162988-TA-T,TAA 25016841-TA-T,TAA P1_g3 22×A***
27449855-C-T 25303708-C-T P1_Y2 ***
27457630-CCACCT-ATACCC 25311483-CCACCT-ATACCC P1_Y2 ***
27457652-CTT-GTG 25311505-CTT-GTG P1_Y2 ***
27465667-A-G 25319520-A-G P1_Y2 ***
27465915-C-T 25319768-C-T P1_Y2 ***
27471900-T-C 25325753-T-C P1_Y2 ***
27510656-TG-CA 25364509-TG-CA P1_Y2 ***
27528202-C-T 25382055-C-T P1_Y2 ***
27540917-AACAC-A,AAC 25394770-AACAC-A,AAC P1_Y2 24×AC***
27544053-A-T 25397906-A-T P1_Y2 ***
27544063-T-G 25397916-T-G P1_Y2 ***
27545813-T-A 25399666-T-A P1_Y2 ***
27551631-G-A 25405484-G-A P1_Y2 ***
27569627-A-G 25423480-A-G P1_Y2 ***
27574847-T-C 25428700-T-C P1_Y2 ***
27577413-A-G 25431266-A-G P1_Y2 ***
27579851-A-G 25433704-A-G P1_Y2 ***
27579931-G-A 25433784-G-A P1_Y2 ***
27648206-A-G 25502059-A-G P1_Y2 ***
27733713-CAAA-C,CAA 25587566-CAAA-C,CAA P1_Y2 26×A***
27741512-C-A 25595365-C-A P1_Y2 ***
27772643-TA-T,TAA 25626496-TA-T,TAA P1_Y2 21×A***
27792864-TC-T 25646717-TC-T P1_Y2 ***
27794398-TT-T,TC 25648251-TT-T,TC P1_Y2 ***
27900968-T-C 25754821-T-C P1_Y2 ***
27921390-T-C 25775243-T-C P1_Y2 ***
27934373-A-G 25788226-A-G P1_Y2 ***
27966481-G-GC 25820334-G-GC P1_Y2 ***
27997468-CAA-C,CA 25851321-CAA-C,CA P1_Y2 23×A***
28016310-T-C 25870163-T-C P1_Y2 ***
28025095-T-C 25878948-T-C P1_Y2 ***
28035108-A-G 25888961-A-G P1_Y2 ***
28051628-AT-A 25905481-AT-A P1_Y2 ***
28081982-T-C 25935835-T-C P1_Y2 ***
28233717-T-C 26087570-T-C P1_b4 ***
28347667-C-A 26201520-C-A P1_gr2 ***
28349651-T-C 26203504-T-C P1_gr2 ***
28364621-T-G 26218474-T-G P1_gr2 ***
28364667-GA-G 26218520-GA-G P1_gr2 ***
28364693-A-G 26218546-A-G P1_gr2 ***
28364759-G-T 26218612-G-T P1_gr2 ***
28367039-TG-CGT 26220892-TG-CGT P1_gr2 ***
28396214-A-G 26250067-A-G P1_gr2 ***
28397576-G-A 26251429-G-A P1_gr2 ***
28404810-C-A 26258663-C-A P1_gr2 ***
28414521-A-G 26268374-A-G P1_gr2 ***
28418336-A-G 26272189-A-G P1_gr2 ***
28431129-G-A 26284982-G-A P1_gr2 ***
28431131-G-A 26284984-G-A P1_gr2 ***
28437104-C-T 26290957-C-T P1_gr2 ***
28453106-G-A 26306959-G-A P1_gr2 ***
28453116-A-T 26306969-A-T P1_gr2 ***
28456134-T-C 26309987-T-C P1_gr2 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.