Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z17998 > Y16002 > Z17999 > Z18000 > 11815423-C-CAGA > Z29953 > BY3349

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
346777
BigY3
346777
BigY2
346777
5943666-G-C 6075625-G-C A*
25518705-G-A 23372558-G-A P1_gr1 ***A*
26097996-C-T 23951849-C-T P1_Y1 ***A*
13449818-G-A 11294142-G-A A*A*
28817138-A-G 26670991-A-G A*
13459316-C-T 11303640-C-T A*
13450562-T-G 11294886-T-G A*
17147252-G-T 15035372-G-T BY112653 YY+++
22362147-A-T 20200261-A-T DYZ19 +**
22472930-T-A 20311044-T-A BY222805 DYZ19 +**+
22560199-G-A 20398313-G-A BY139019 YY+++
6765680-T-C 6897639-T-C FT421406 YY+**
3554057-C-CA 3686016-C-CA 8×A+
9942482-G-C 10104873-G-C FT426583 Y+
13218511-C-G 11062835-C-G FT441091 +
20023965-CATAG-C 17912085-CATAG-C P5_Prx 8×ATAG**
28712847-ATG-A 26566700-ATG-A 8×TG**
3732646-GT-G 3864605-GT-G 10×T**
13277796-C-A 11122120-C-A **
13512148-G-T 11356472-G-T **
14844533-C-T 12732599-C-T PF691 ****
24267259-C-A 22121112-C-A P3_b1 **
14784913-C-T 12672983-C-T **
28708392-C-A 26562245-C-A **
10961500-A-T **
28497051-C-A 26350904-C-A **
13457751-C-A 11302075-C-A **
14844390-C-A 12732456-C-A **
10764710-T-C **
16319658-C-A 14207778-C-A **
27733694-G-A 25587547-G-A P1_Y2 **
20404481-C-T 18242595-C-T P5_Dst **
5011617-C-A 5143576-C-A **
23831354-A-G 21669468-A-G **
7579792-C-A 7711751-C-A **
10801417-C-CCTGCCACACA **
10961504-C-G **
10961509-T-TTCCTC **
5603758-C-A 5735717-C-A **
56847539-A-T **
11673372-T-G **
21974850-C-A 19812964-C-A **
10988820-C-T **
4873746-C-A 5005705-C-A **
8723696-C-A 8855655-C-A **
28555585-C-A 26409438-C-A **
9932630-C-A 10095021-C-A **
16077542-GC-G 13965662-GC-G **
56861986-G-T **
11007258-C-A **
11673387-A-G **
16968225-C-A 14856345-C-A **
19293769-TCAAA-T 17181889-TCAAA-T **
13821458-C-A 11700752-C-A **
7150803-C-A 7282762-C-A **
7923783-A-T 8055742-A-T **
8110609-C-A 8242568-C-A **
19079084-C-A 16967204-C-A **
14114981-C-A 11994275-C-A **
24836734-G-GGGAA 22690587-G-GGGAA P3_b2 15×GGAA**
15762104-G-T 13650224-G-T **
15092649-C-T 12980738-C-T **
10956698-C-A **
10956700-ATTGCG-A **
21703284-C-A 19541398-C-A **
7063814-C-A 7195773-C-A **
9973564-C-CT 10135955-C-CT 8×T**
10764233-G-T **
6293371-TTG-T 6425330-TTG-T IR3_Dst **
14527561-C-A 12415762-C-A **
10781273-C-A **
15776903-C-A 13665023-C-A FT201645 **
16932884-C-A 14821004-C-A **
4388010-C-A 4519969-C-A **
18736641-C-A 16624761-C-A **
10935999-C-A **
11013198-TATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATTCC-T **
10023737-GTC-G 10186128-GTC-G **
15045552-C-A 12933642-C-A **
9056763-C-A **
10762556-C-T **
23086672-G-T 20924786-G-T **
19127647-T-A 17015767-T-A **
3763094-A-AT 3895053-A-AT 8×T**
17217400-C-A 15105520-C-A **
23831353-C-T 21669467-C-T **
11030199-A-G **
19983462-C-A 17871582-C-A P5_Prx **
14492778-G-T 12380975-G-T **
56844782-G-C **
14462554-A-C 12341827-A-C **
10940126-C-A **
7170836-A-G 7302795-A-G **
11018175-C-A **
56847082-C-A **
11029727-C-A **
18844222-C-A 16732342-C-A **
4171668-C-A 4303627-C-A **
14539608-G-T 12427809-G-T **
11030208-C-T **
11030210-T-A **
11030218-C-CATTTT **
18158526-G-T 16046646-G-T **
14077122-C-A 11956416-C-A **
10676932-G-T **
6698896-C-A 6830855-C-A **
19324181-G-A 17212301-G-A **
16312382-G-A 14200502-G-A **
3048249-C-A 3180208-C-A **
27584589-G-T 25438442-G-T P1_Y2 **
7127353-C-A 7259312-C-A **
11003199-C-A **
11659697-C-A **
10989368-T-C **
10989378-C-T **
10989449-C-T **
10989465-C-CATTCA **
10661102-C-A **
14106949-C-A 11986243-C-A **
23789324-G-GTT 21627438-G-GTT 13×T**
8076832-C-A 8208791-C-A **
22787161-C-A 20625275-C-A **
7128258-C-A 7260217-C-A **
2670111-T-C 2802070-T-C **
2708227-T-A 2840186-T-A **
2791888-C-CA 2923847-C-CA **
2842950-C-T 2974909-C-T **
2860255-C-A 2992214-C-A **
2881316-C-A 3013275-C-A **
2975559-G-T 3107518-G-T **
2988695-C-A 3120654-C-A **
2995658-C-A 3127617-C-A **
3091975-C-A 3223934-C-A **
3116161-T-C 3248120-T-C **
3165098-C-T 3297057-C-T **
3218617-G-A 3350576-G-A **
3229029-C-A 3360988-C-A **
3330972-C-A 3462931-C-A **
3346368-C-T 3478327-C-T **
3416681-G-T 3548640-G-T **
3551331-G-A 3683290-G-A **
3589560-G-T 3721519-G-T **
3599771-C-T 3731730-C-T **
3641716-C-A 3773675-C-A **
3688359-C-A 3820318-C-A **
3740751-G-T 3872710-G-T **
3758660-C-A 3890619-C-A **
3823108-G-T 3955067-G-T **
4052119-A-T 4184078-A-T **
4094253-T-TA 4226212-T-TA **
4107486-C-A 4239445-C-A **
4130012-T-G 4261971-T-G **
4151292-C-CA 4283251-C-CA 8×A**
4178896-G-A 4310855-G-A **
4216002-G-A 4347961-G-A **
4302293-C-A 4434252-C-A FT378945 **
4326708-C-A 4458667-C-A **
4369113-C-A 4501072-C-A **
4444781-G-T 4576740-G-T **
4521473-T-A 4653432-T-A **
4533551-G-A 4665510-G-A **
4626307-A-G 4758266-A-G **
4799675-G-T 4931634-G-T **
4874253-T-C 5006212-T-C **
4931957-G-T 5063916-G-T **
4947275-G-T 5079234-G-T **
4972446-A-T 5104405-A-T **
4999832-C-A 5131791-C-A **
5000570-G-A 5132529-G-A **
5011677-C-A 5143636-C-A **
5012118-C-T 5144077-C-T **
5012208-A-G 5144167-A-G **
5080548-C-A 5212507-C-A **
5126695-G-T 5258654-G-T **
5293911-T-C 5425870-T-C **
5350722-C-T 5482681-C-T FT206521 **
5472041-G-T 5604000-G-T **
5537581-T-G 5669540-T-G **
5560647-C-A 5692606-C-A **
5562842-G-A 5694801-G-A **
5568132-C-A 5700091-C-A **
5606662-C-A 5738621-C-A **
5619898-G-A 5751857-G-A **
5629648-G-T 5761607-G-T **
5719357-G-T 5851316-G-T **
5857626-C-A 5989585-C-A **
5861672-G-A 5993631-G-A **
5876536-G-T 6008495-G-T **
5924353-C-A 6056312-C-A **
5924411-C-A 6056370-C-A **
5990390-C-T 6122349-C-T **
5998874-T-A 6130833-T-A **
6090357-T-C 6222316-T-C **
6365180-C-A 6497139-C-A **
6368120-A-C 6500079-A-C **
6406021-T-A 6537980-T-A **
6444348-C-A 6576307-C-A **
6765940-C-A 6897899-C-A **
6929375-C-A 7061334-C-A **
6930602-C-T 7062561-C-T **
6978351-G-A 7110310-G-A **
7019193-C-A 7151152-C-A **
7138484-C-A 7270443-C-A **
7141886-C-A 7273845-C-A **
7210168-C-A 7342127-C-A **
7306329-C-A 7438288-C-A **
7306801-C-A 7438760-C-A **
7341060-G-T 7473019-G-T **
7416653-C-A 7548612-C-A **
7861224-C-T 7993183-C-T **
7923753-T-C 8055712-T-C **
7923756-T-C 8055715-T-C **
7923763-C-T 8055722-C-T **
7923768-G-A 8055727-G-A **
7923779-G-A 8055738-G-A **
7990811-C-A 8122770-C-A **
8178281-A-G 8310240-A-G **
8216515-C-G 8348474-C-G **
8811219-G-T 8943178-G-T **
8851511-G-T 8983470-G-T **
9015848-G-A 9178239-G-A **
9063392-A-C 9225783-A-C **
9198132-C-A 9360523-C-A **
9416869-C-A 9579260-C-A **
9416924-C-A 9579315-C-A **
9885451-T-A 10047842-T-A **
9887058-C-A 10049449-C-A **
9927625-C-A 10090016-C-A **
10011136-T-C 10173527-T-C **
10015036-C-A 10177427-C-A **
10019678-C-A 10182069-C-A **
10031158-C-G 10193549-C-G **
10040863-A-G 10203254-A-G **
10061022-C-G 10223413-C-G **
10094206-C-A 10256597-C-A **
10658721-A-G **
10668608-CTGCAT-C **
10668623-T-TTATGA **
10750769-C-A **
10762538-A-C **
10762540-T-A **
10762567-T-C **
10762569-C-T **
10763483-T-C **
10785658-C-A **
10800222-C-A **
10800230-C-A **
10822441-C-A **
10822505-C-A **
10825429-T-C **
10831213-G-T **
10860930-C-A **
10862524-C-A **
10912312-C-A **
10939492-C-A **
10948196-C-T **
10949875-G-T **
10985312-T-C **
10988787-C-CTGCCT **
10988797-C-T **
10988821-A-G **
10988837-C-T **
10988849-C-G **
10988856-A-T **
10990642-T-C **
10997324-T-C **
11002117-C-A **
11003141-C-A **
11010740-C-A **
11016397-C-A **
11025853-C-A **
11035723-C-A **
13238230-C-A 11082554-C-A **
13267559-C-A 11111883-C-A **
13273329-T-C 11117653-T-C **
13289091-T-C 11133415-T-C **
13295136-C-A 11139460-C-A **
13358776-C-T 11203100-C-T **
13433727-C-A 11278051-C-A **
13461669-C-A 11305993-C-A **
13469614-C-A 11313938-C-A **
13575508-C-A 11419832-C-A **
13579880-C-A 11424204-C-A **
11647092-G-C **
11650351-A-G **
11650364-T-A **
11650371-ACAATG-A **
11658365-A-G **
11666240-G-A **
11673374-A-G **
11673381-G-T **
11673391-G-T **
13860795-G-T 11740089-G-T **
13860798-T-C 11740092-T-C **
13884527-C-A 11763821-C-A **
13926529-C-A 11805823-C-A **
13941758-C-T 11821052-C-T **
13996422-T-C 11875716-T-C **
14029387-C-A 11908681-C-A **
14068925-C-A 11948219-C-A **
14118187-C-A 11997481-C-A Y36611 **
14174683-C-A 12053977-C-A **
14212534-T-C 12091828-T-C **
14230082-C-A 12109376-C-A **
14269603-C-A 12148897-C-A FT242671 **
14278929-T-A 12158223-T-A **
14490904-A-G 12370173-A-G **
12374000-C-T **
12374038-C-T **
14501899-A-T 12390104-A-T **
14525791-C-A 12413992-C-A **
14531218-G-A 12419419-G-A **
14544057-C-G 12432258-C-G FT123989 **
14558004-C-A 12446205-C-A **
14602635-A-C 12490837-A-C **
14620744-C-A 12508942-C-A **
14620745-T-C 12508943-T-C **
14620760-C-G 12508958-C-G **
14620764-C-GATTT 12508962-C-GATTT **
14620785-G-C 12508983-G-C **
14620789-T-A 12508987-T-A **
14683599-T-A 12571665-T-A **
14727333-T-A 12615401-T-A **
14741031-C-A 12629099-C-A **
14767975-C-A 12656044-C-A **
14911070-G-C 12799137-G-C **
14933776-A-G 12821841-A-G **
15193582-C-A 13081668-C-A **
15333465-G-T 13221583-G-T **
15334456-C-A 13222574-C-A **
15474961-T-C 13363081-T-C **
15495109-G-C 13383229-G-C **
15574901-C-T 13463021-C-T **
15574911-A-T 13463031-A-T **
15574947-C-T 13463067-C-T **
15648706-G-A 13536826-G-A **
15653682-GT-G 13541802-GT-G **
15732307-C-A 13620427-C-A **
15763048-C-A 13651168-C-A **
15788105-A-G 13676225-A-G **
15909407-C-A 13797527-C-A **
15971608-A-C 13859728-A-C **
16016312-T-C 13904432-T-C **
16052142-C-A 13940262-C-A **
16181186-A-G 14069306-A-G **
16245033-C-A 14133153-C-A **
16312372-G-A 14200492-G-A **
16344613-C-T 14232733-C-T **
16445943-G-A 14334063-G-A **
16502201-C-A 14390321-C-A **
16577624-G-C 14465744-G-C **
16620406-G-T 14508526-G-T **
16620606-T-G 14508726-T-G **
16704520-C-A 14592640-C-A **
16915108-T-C 14803228-T-C **
16995286-A-G 14883406-A-G **
16998024-T-C 14886144-T-C **
17103815-G-T 14991935-G-T **
17175416-G-T 15063536-G-T **
17203545-A-G 15091665-A-G **
17270499-T-C 15158619-T-C **
17338554-A-T 15226674-A-T **
17342861-G-A 15230981-G-A **
17373691-A-G 15261811-A-G **
17486112-A-G 15374232-A-G **
17545958-C-A 15434078-C-A **
17605468-C-A 15493588-C-A **
17628657-T-C 15516777-T-C **
17716745-C-A 15604865-C-A **
17865373-C-A 15753493-C-A **
17928308-G-T 15816428-G-T **
17954517-C-A 15842637-C-A **
18130615-A-C 16018735-A-C **
18191781-A-T 16079901-A-T **
18351749-A-ACAG 16239869-A-ACAG P6_Prx **
18501288-A-AACAG 16389408-A-AACAG P6_Dst **
18701769-T-A 16589889-T-A **
18810749-G-A 16698869-G-A **
18844278-G-T 16732398-G-T **
18869137-GC-G 16757257-GC-G **
19125146-C-A 17013266-C-A **
19300738-C-A 17188858-C-A **
19310508-C-A 17198628-C-A **
19324185-A-G 17212305-A-G **
19324190-A-AC 17212310-A-AC **
19324192-A-AGGCGGGTGG 17212312-A-AGGCGGGTGG **
19463325-C-A 17351445-C-A **
19520823-CAGAGCAAGACTCAGTCTCAATTAAAAAAAAAAAAAAAAAAAAAGAATGAA-C 17408943-CAGAGCAAGACTCAGTCTCAATTAAAAAAAAAAAAAAAAAAAAAGAATGAA-C **
19644633-A-G 17532753-A-G P5_Prx **
19709567-G-T 17597687-G-T P5_Prx **
19720733-G-TT 17608853-G-TT P5_Prx **
20364108-A-AAGACAG 18202222-A-AAGACAG P5_Dst **
20614737-A-G 18452851-A-G P4_Prx **
20741772-G-T 18579886-G-T P4_Prx **
21048470-C-G 18886584-C-G **
21096068-C-A 18934182-C-A **
21122804-T-C 18960918-T-C **
21127565-C-A 18965679-C-A **
21149629-G-A 18987743-G-A FT177047 **
21201706-T-C 19039820-T-C **
21207542-G-A 19045656-G-A **
21211348-A-C 19049462-A-C **
21320086-G-A 19158200-G-A Z38525 FGC38081 **
21391649-C-A 19229763-C-A **
21543276-T-C 19381390-T-C **
21624657-G-A 19462771-G-A **
21624677-C-G 19462791-C-G **
21624678-A-G 19462792-A-G **
21624680-T-A 19462794-T-A **
21624681-T-G 19462795-T-G **
21624688-A-G 19462802-A-G **
21796572-C-A 19634686-C-A **
21807080-A-G 19645194-A-G **
21821449-TG-T 19659563-TG-T **
21831902-C-A 19670016-C-A **
21863852-C-A 19701966-C-A **
21915583-C-T 19753697-C-T **
21940112-G-T 19778226-G-T **
21959165-C-T 19797279-C-T 8×T**
21991100-C-A 19829214-C-A **
22199329-C-A 20037443-C-A **
22296107-T-C 20134221-T-C DYZ19 **
22303612-A-ATGTC 20141726-A-ATGTC DYZ19 **
22602425-C-A 20440539-C-A **
22660924-A-G 20499038-A-G **
22836704-C-A 20674818-C-A **
22996924-CT-C 20835038-CT-C **
23097946-C-T 20936060-C-T **
23111774-C-A 20949888-C-A **
23305936-C-A 21144050-C-A **
23364208-A-G 21202322-A-G **
23364225-T-C 21202339-T-C **
23368844-T-C 21206958-T-C **
23438879-C-A 21276993-C-A 21×T**
23438950-C-G 21277064-C-G **
23831329-G-A 21669443-G-A **
23831388-C-T 21669502-C-T **
23981947-TTC-A 21835800-TTC-A **
24264460-G-T 22118313-G-T P3_b1 **
25524727-G-TTTT 23378580-G-TTTT P1_gr1 **
26199598-A-ATT 24053451-A-ATT P1_Y1 **
27021835-GTACTTGAAA-G 24875688-GTACTTGAAA-G P1_r4 **
27552642-G-T 25406495-G-T P1_Y2 **
27733702-C-A 25587555-C-A P1_Y2 **
28014747-A-AAGACAG 25868600-A-AAGACAG P1_Y2 **
28234547-C-A 26088400-C-A P1_b4 **
28499428-C-A 26353281-C-A **
28642032-G-T 26495885-G-T **
28688533-C-A 26542386-C-A **
28712005-C-A 26565858-C-A **
28719308-C-A 26573161-C-A **
28719973-T-C 26573826-T-C **
28722120-C-A 26575973-C-A FT315237 **
28771954-C-A 26625807-C-A **
28775401-G-A 26629254-G-A **
56858697-G-T **
5557238-C-CAAA 5689197-C-CAAA 23×A**
3509759-A-G 3641718-A-G **
6305868-A-C 6437827-A-C IR3_Dst **
13355869-C-T 11200193-C-T **
15921579-T-A 13809699-T-A **
16096871-A-C 13984991-A-C **
16226566-T-C 14114686-T-C **
18463113-T-TATGC 16351233-T-TATGC P6_Dst **
27939046-A-G 25792899-A-G P1_Y2 **
27939084-T-TA 25792937-T-TA P1_Y2 **
10035889-T-G 10198280-T-G ***
5785696-CTG-C 5917655-CTG-C ***
14604590-CTTTTTT-C 12492792-CTTTTTT-C 21×T***
13453617-T-G 11297941-T-G ***
25106717-G-A 22960570-G-A g1 ***
58996491-G-C 56850344-G-C ***
59000489-C-T 56854342-C-T ***
21438544-GA-G 19276658-GA-G 10×A***
14717666-G-T 12605734-G-T ***
17503371-C-A 15391491-C-A ***
56825917-A-G,T ***
2948010-C-A 3079969-C-A ***
10935690-C-A ***
2665740-C-A 2797699-C-A ***
10843812-C-A ***
5524235-C-A 5656194-C-A ***
7723782-C-A 7855741-C-A ***
56826612-C-G ***
18390004-C-A 16278124-C-A P6_Gap ***
13467813-A-G 11312137-A-G ***
10777961-C-T ***
14053504-C-A 11932798-C-A ***
14376501-C-A 12255797-C-A ***
10798280-G-T ***
3706729-A-T 3838688-A-T ***
6829419-A-G 6961378-A-G ***
9859191-TCAAAA-T 10021582-TCAAAA-T ***
10880662-C-A ***
13482106-C-A 11326430-C-A ***
11649414-A-G ***
11655296-G-T ***
11655327-G-T ***
13801514-G-T 11680808-G-T ***
14376526-C-T 12255822-C-T ***
15211312-G-T 13099398-G-T ***
17375278-T-A 15263398-T-A ***
18869082-A-C 16757202-A-C ***
21262469-A-AC 19100583-A-AC ***
22919318-GTTTGGGGTTTTTTTTTTTTTTTTT-G,GTTTGGGGTTTTTTTTTTTTTTTT 20757432-GTTTGGGGTTTTTTTTTTTTTTTTT-G,GTTTGGGGTTTTTTTTTTTTTTTT ***
23475257-CTTT-C,CT 21313371-CTTT-C,CT 15×T***
28784594-G-T 26638447-G-T ***
56832915-ACTCCATTCCACTCCA-A,ACTCCATTCCACTCC ***
18159703-T-C 16047823-T-C ***
3792648-A-G 3924607-A-G ***
5715839-T-A 5847798-T-A ***
6444927-ACAC-A 6576886-ACAC-A ***
6444938-T-TGTG 6576897-T-TGTG ***
7648848-T-C 7780807-T-C ***
9909812-G-A 10072203-G-A ***
10031170-T-A 10193561-T-A ***
13467578-G-A 11311902-G-A ***
16999332-T-C 14887452-T-C ***
17648536-A-ATTT 15536656-A-ATTT 22×T***
19014346-T-C 16902466-T-C ***
22524859-T-C 20362973-T-C ***
23857032-A-G 21695146-A-G ***
28575740-A-G 26429593-A-G ***
28778887-A-G 26632740-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.