Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z17998 > Z17999 > Z18000 > Z36749 > Z36748 > Y31390

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
385777
FTDNA
385777
BigY2
385777
Manual
Edits
56836655-G-A A*
15520786-C-CA 13408906-C-CA 9×AA*
13687234-A-C 11531558-A-C A*A*
13449222-C-G 11293546-C-G A*
56829724-T-A A*
25530385-G-A 23384238-G-A P1_gr1 +
23393456-T-G 21231570-T-G FT84148 YY+**
13194547-ATCCAC-A 11038871-ATCCAC-A 4×TCCAC***+
7305861-G-T 7437820-G-T BY64469 YY+++
17041552-G-T 14929672-G-T BY111943 YY+++
10683767-C-G +**
21759687-A-AT 19597801-A-AT 9×T*++
2832449-G-C 2964408-G-C BY56730 YY+++
21551652-T-C 19389766-T-C PF3058 YY+
7431116-G-T 7563075-G-T Y*
28809729-G-T 26663582-G-T *
16648161-C-A 14536281-C-A **
16486703-C-A 14374823-C-A **
16532677-G-A 14420797-G-A **
16503796-G-A 14391916-G-A BY108229 **
16658946-C-A 14547066-C-A **
16757078-A-G 14645198-A-G **
16681638-C-A 14569758-C-A **
16703759-G-T 14591879-G-T **
16704975-A-G 14593095-A-G **
16765554-C-A 14653674-C-A **
16783310-C-A 14671430-C-A **
16783657-T-G 14671777-T-G **
16783674-C-A 14671794-C-A **
16783687-T-C 14671807-T-C **
16783693-T-G 14671813-T-G **
16480035-A-C 14368155-A-C **
16351679-C-A 14239799-C-A **
16409068-G-T 14297188-G-T **
16004115-G-T 13892235-G-T **
15848963-TA-T 13737083-TA-T **
15860233-T-TAA 13748353-T-TAA 12×A**
15864078-C-A 13752198-C-A **
15894589-A-T 13782709-A-T **
15916474-C-A 13804594-C-A **
15931592-C-A 13819712-C-A **
16006088-C-A 13894208-C-A **
16357364-G-GTGTGTA 14245484-G-GTGTGTA **
16054732-C-A 13942852-C-A **
16057204-C-A 13945324-C-A **
16070818-C-A 13958938-C-A **
16146489-A-AAGAG 14034609-A-AAGAG P8_Dst **
16220659-A-T 14108779-A-T **
16312347-C-A 14200467-C-A **
16888227-C-A 14776347-C-A **
16881855-C-A 14769975-C-A **
17314654-C-A 15202774-C-A **
16926055-C-A 14814175-C-A **
18218881-C-A 16107001-C-A **
17864785-C-A 15752905-C-A **
17874259-C-A 15762379-C-A **
17897922-C-A 15786042-C-A **
17950763-C-A 15838883-C-A **
18017111-ATATATATATATATATATATATAT-A 15905231-ATATATATATATATATATATATAT-A **
18019229-C-A 15907349-C-A **
18336350-G-A 16224470-G-A P6_Prx **
17857315-G-T 15745435-G-T **
18633598-G-A 16521718-G-A **
18688145-C-A 16576265-C-A **
18710450-C-T 16598570-C-T **
18740840-T-A 16628960-T-A **
18768319-C-A 16656439-C-A **
18795007-C-A 16683127-C-A **
18825581-G-A 16713701-G-A **
17860085-G-T 15748205-G-T **
17849084-T-TGACAG 15737204-T-TGACAG **
17071382-A-G 14959502-A-G **
17440961-C-A 15329081-C-A **
17128573-C-A 15016693-C-A **
17136896-A-C 15025016-A-C **
17170237-C-A 15058357-C-A **
17211620-C-A 15099740-C-A **
17217398-C-A 15105518-C-A **
17382638-C-A 15270758-C-A **
17434086-T-C 15322206-T-C **
17462106-C-A 15350226-C-A **
17781567-T-TATTTA 15669687-T-TATTTA **
17480166-T-C 15368286-T-C **
17519741-C-A 15407861-C-A **
17544702-C-A 15432822-C-A **
17629673-T-C 15517793-T-C **
17717035-C-A 15605155-C-A **
17722811-G-T 15610931-G-T **
17728707-G-T 15616827-G-T **
15824155-GATAATAATGTTTTTGTATACTAACAAT-G 13712275-GATAATAATGTTTTTGTATACTAACAAT-G **
15579478-A-G 13467598-A-G **
15824118-CTCTGTCTCCAAAAATATAATAATAATTATAATAAA-C 13712238-CTCTGTCTCCAAAAATATAATAATAATTATAATAAA-C **
14152994-C-A 12032288-C-A **
14015615-G-T 11894909-G-T **
14023013-C-A 11902307-C-A **
14036081-C-A 11915375-C-A **
14073462-C-A 11952756-C-A **
14076063-G-T 11955357-G-T **
14149237-C-A 12028531-C-A **
14177891-G-A 12057185-G-A FT138303 **
14008778-GAAAAA-G 11888072-GAAAAA-G 25×A**
14195789-C-A 12075083-C-A **
14218436-C-A 12097730-C-A **
14241204-C-A 12120498-C-A **
14286102-C-A 12165396-C-A **
14315607-TCTTGAACTC-T 12194901-TCTTGAACTC-T **
14354449-GT-G 12233744-GT-G **
14358410-G-A 12237705-G-A 14×A**
58972517-G-T 56826370-G-T **
14002138-C-A 11881432-C-A **
14453709-GAAA-G 12332982-GAAA-G 18×A**
11666510-T-A **
13489004-G-C 11333328-G-C **
13568558-C-A 11412882-C-A **
13587708-T-A 11432032-T-A **
13588281-C-A 11432605-C-A **
13593593-C-A 11437917-C-A **
13598833-C-A 11443157-C-A **
11666502-G-A **
13858009-C-A 11737303-C-A **
14000532-C-A 11879826-C-A **
13858011-G-T 11737305-G-T **
13858012-A-T 11737306-A-T **
13936205-GAAGAAAGAAAGA-G 11815499-GAAGAAAGAAAGA-G 14×AAGA**
13941579-T-A 11820873-T-A **
13945896-T-A 11825190-T-A **
13960849-C-A 11840143-C-A **
13973248-C-A 11852542-C-A **
14447388-A-G 12326661-A-G **
14462773-T-A 12342046-T-A **
15779992-G-A 13668112-G-A **
15368668-C-A 13256788-C-A **
15168846-C-T 13056932-C-T **
15178548-C-A 13066634-C-A **
15180209-A-T 13068295-A-T **
15260089-C-A 13148173-C-A **
13203564-CTCAAAAAAAAAAAAAAAAAAATTATGTATACGCATATAGTGCAT-C **
15360740-C-A 13248860-C-A **
15401849-C-A 13289969-C-A **
15104893-A-G 12992981-A-G **
15500499-C-A 13388619-C-A **
15579477-C-T 13467597-C-T **
18913366-A-T 16801486-A-T **
15579494-C-G 13467614-C-G **
15733878-TC-T 13621998-TC-T **
15735389-C-A 13623509-C-A **
15746337-C-A 13634457-C-A **
15132045-C-G 13020132-C-G **
15092338-C-A 12980427-C-A **
14495831-GGTGT-G 12384028-GGTGT-G 17×GT**
14825876-A-G 12713943-A-G **
14508726-C-A 12396931-C-A **
14512994-C-A 12401199-C-A **
14538771-C-A 12426972-C-A **
14575813-C-T 12464013-C-T **
14593746-C-A 12481946-C-A **
14802716-C-A 12690787-C-A **
14821752-C-A 12709819-C-A **
14828624-C-A 12716691-C-A **
15074633-C-A 12962723-C-A **
14894095-C-A 12782161-C-A **
14909352-G-T 12797419-G-T **
14934517-C-A 12822582-C-A **
14982038-C-A 12870106-C-A **
15012807-G-T 12900895-G-T **
15012812-T-G 12900900-T-G **
15044309-C-A 12932399-C-A **
18890880-T-G 16779000-T-G **
19310217-C-A 17198337-C-A **
19000641-G-C 16888761-G-C **
27617691-T-C 25471544-T-C P1_Y2 **
26010268-G-GTATATATATATATATA 23864121-G-GTATATATATATATATA P1_Y1 21×TA**
26106015-C-A 23959868-C-A P1_Y1 **
26152056-CT-C 24005909-CT-C P1_Y1 **
26415676-C-CAA 24269529-C-CAA P1_Y1 20×A**
27570851-G-T 25424704-G-T P1_Y2 **
27617638-T-A 25471491-T-A P1_Y2 **
27647519-C-A 25501372-C-A P1_Y2 **
25937806-C-A 23791659-C-A P1_Y1 **
27733708-C-A 25587561-C-A P1_Y2 **
27791869-T-G 25645722-T-G P1_Y2 **
27966055-A-AACAG 25819908-A-AACAG P1_Y2 **
28361461-T-TCTG 26215314-T-TCTG P1_gr2 **
28468791-C-A 26322644-C-A **
28481210-C-A 26335063-C-A **
28484208-C-A 26338061-C-A **
25990620-TTG-T 23844473-TTG-T P1_Y1 **
25871027-A-G 23724880-A-G P1_Y1 **
28635926-C-A 26489779-C-A **
24371798-G-T 22225651-G-T **
23773567-TT-A 21611681-TT-A **
23773575-A-G 21611689-A-G **
23810721-C-A 21648835-C-A **
23848484-G-T 21686598-G-T **
23991920-G-A 21845773-G-A **
24069744-A-G 21923597-A-G P3_b1 **
24342937-T-TCAG 22196790-T-TCAG P3_t1 **
24405455-C-A 22259308-C-A **
25592877-TC-T 23446730-TC-T P1_gr1 **
24422070-C-A 22275923-C-A **
24424257-G-A 22278110-G-A **
24459993-G-C 22313846-G-C **
24523480-G-T 22377333-G-T **
24634204-G-T 22488057-G-T P3_t2 **
24931840-G-A 22785693-G-A g1 **
25333911-G-A 23187764-G-A P2_r1 **
28484320-C-A 26338173-C-A **
28672996-C-A 26526849-C-A **
23773554-A-G 21611668-A-G **
4466859-T-A 4598818-T-A **
2950298-C-G 3082257-C-G **
3266402-T-C 3398361-T-C **
3547944-C-T 3679903-C-T **
3562850-G-T 3694809-G-T **
4017988-C-T 4149947-C-T **
4017994-C-T 4149953-C-T **
4949104-A-G 5081063-A-G **
2950288-A-G 3082247-A-G **
13340410-C-T 11184734-C-T **
13466610-A-C 11310934-A-C **
13628074-T-A 11472398-T-A **
18891130-G-T 16779250-G-T **
19691786-A-T 17579906-A-T P5_Prx **
21152221-T-C 18990335-T-C **
28564653-A-G 26418506-A-G **
2950297-G-T 3082256-G-T **
19784878-CTTTT-C 17672998-CTTTT-C P5_Prx 16×T**
28708286-C-A 26562139-C-A **
56831494-C-T **
28719845-C-A 26573698-C-A **
28719854-CT-C 26573707-CT-C 10×T**
28767147-C-A 26621000-C-A **
28780016-C-A 26633869-C-A **
56823194-G-T **
58972137-G-C 56825990-G-C **
56825997-T-A **
56831501-T-A **
13628083-T-A 11472407-T-A **
56840033-G-T **
56840309-G-T **
56845496-T-G **
56846378-T-A **
56858680-G-T **
13340408-A-C 11184732-A-C **
13453484-C-A 11297808-C-A **
23773554-AT-A 21611668-AT-A **
23773549-A-C 21611663-A-C **
19007708-C-A 16895828-C-A **
21182452-G-A 19020566-G-A **
20832417-C-A 18670531-C-A P4_Gap **
21028772-A-AAGACAG 18866886-A-AAGACAG P4_Dst **
21107546-G-T 18945660-G-T **
21112126-C-A 18950240-C-A **
21134831-C-A 18972945-C-A **
21148577-C-A 18986691-C-A **
21200701-C-A 19038815-C-A **
20640178-G-T 18478292-G-T P4_Prx **
21253906-C-A 19092020-C-A **
21281748-G-A 19119862-G-A **
21308242-C-A 19146356-C-A **
21340179-C-A 19178293-C-A **
21373615-C-A 19211729-C-A **
21412261-C-T 19250375-C-T FT25347 36×T**
21522091-C-A 19360205-C-A **
20779664-G-GTGTC 18617778-G-GTGTC P4_Prx **
20442919-T-TGCCTACTAGCAGACAGGA 18281033-T-TGCCTACTAGCAGACAGGA P5_Dst **
21681796-C-A 19519910-C-A **
19331780-G-A 17219900-G-A **
19022401-C-A 16910521-C-A **
19106907-A-T 16995027-A-T **
19135129-G-A 17023249-G-A **
19204204-C-A 17092324-C-A Y103996 **
19254456-T-A 17142576-T-A **
13483271-G-C 11327595-G-C **
19331777-T-C 17219897-T-C **
19337654-TTG-T 17225774-TTG-T **
19829521-C-G 17717641-C-G P5_Prx **
19407627-A-C 17295747-A-C **
19418523-TTA-T 17306643-TTA-T **
19506855-C-A 17394975-C-A **
19597201-AT-A 17485321-AT-A P5_Prx **
19597206-TTA-T 17485326-TTA-T P5_Prx **
19678527-G-T 17566647-G-T P5_Prx **
19678536-G-T 17566656-G-T P5_Prx **
21651820-C-A 19489934-C-A **
21713437-C-A 19551551-C-A **
23773542-G-C 21611656-G-C **
22994715-A-G 20832829-A-G **
22755997-C-A 20594111-C-A **
22793132-C-A 20631246-C-A **
22809826-C-A 20647940-C-A **
22833817-C-G 20671931-C-G **
22833853-A-G 20671967-A-G **
22833887-T-A 20672001-T-A **
22869016-C-A 20707130-C-A **
23035858-A-C 20873972-A-C **
22662514-T-A 20500628-T-A **
23062736-C-A 20900850-C-A **
23128091-T-A 20966205-T-A **
23255327-C-A 21093441-C-A **
23259307-G-A 21097421-G-A **
23259308-G-GA 21097422-G-GA **
23425533-C-A 21263647-C-A **
23426935-C-A 21265049-C-A **
22730377-C-A 20568491-C-A **
22611344-C-A 20449458-C-A **
21771516-C-A 19609630-C-A **
21960520-C-A 19798634-C-A **
21771708-C-A 19609822-C-A **
21807065-C-A 19645179-C-A **
21834267-C-A 19672381-C-A **
21885770-A-T 19723884-A-T **
21888372-A-G 19726486-A-G **
21935069-C-A 19773183-C-A **
21939719-T-C 19777833-T-C **
22103663-TA-T 19941777-TA-T **
22587860-A-C 20425974-A-C **
22134132-G-T 19972246-G-T **
22167296-A-C 20005410-A-C **
22173690-C-A 20011804-C-A **
22192994-C-A 20031108-C-A **
22202044-C-A 20040158-C-A **
22537697-A-T 20375811-A-T **
22542063-G-T 20380177-G-T **
13489003-C-A 11333327-C-A **
14015466-G-T 11894760-G-T **
7223024-C-T 7354983-C-T 8×A**
7011584-C-A 7143543-C-A **
6944868-C-A 7076827-C-A **
6977525-C-A 7109484-C-A **
6997988-C-A 7129947-C-A **
6998032-C-A 7129991-C-A **
8296873-C-G 8428832-C-G Z4185 **
7001759-C-A 7133718-C-A **
7015137-C-A 7147096-C-A **
6930824-C-A 7062783-C-A **
7017054-A-G 7149013-A-G **
7063894-C-A 7195853-C-A **
7084343-T-C 7216302-T-C **
7084344-A-T 7216303-A-T **
7084361-G-T 7216320-G-T **
7108710-C-A 7240669-C-A **
6930891-G-A 7062850-G-A Y82909 **
6830802-C-A 6962761-C-A **
7196450-C-T 7328409-C-T **
6419459-C-CTA 6551418-C-CTA **
5924297-C-A 6056256-C-A **
4561563-C-A 4693522-C-A **
6241230-T-TCTGTCTC 6373189-T-TCTGTCTC IR3_Dst **
6352521-G-T 6484480-G-T **
6352531-G-T 6484490-G-T **
6384577-T-G 6516536-T-G **
6429581-C-A 6561540-C-A **
6732495-G-T 6864454-G-T **
6490743-C-A 6622702-C-A **
6519552-G-T 6651511-G-T **
6523535-T-C 6655494-T-C **
6633054-C-A 6765013-C-A **
6663331-A-C 6795290-A-C **
6674625-C-A 6806584-C-A **
7108728-C-A 7240687-C-A **
7199951-T-C 7331910-T-C **
5910733-T-C 6042692-T-C **
7861194-T-C 7993153-T-C **
7615206-C-A 7747165-C-A **
7640916-A-G 7772875-A-G **
7656663-C-A 7788622-C-A **
7664237-T-A 7796196-T-A **
7768762-C-A 7900721-C-A **
7854279-C-A 7986238-C-A **
19340495-C-A 17228615-C-A **
7536558-G-A 7668517-G-A **
7897618-G-T 8029577-G-T **
7990186-G-C 8122145-G-C **
7991403-C-A 8123362-C-A **
8078336-G-C 8210295-G-C **
8109942-C-A 8241901-C-A **
8230288-C-G 8362247-C-G **
22954667-C-A 20792781-C-A ****
7536479-C-A 7668438-C-A **
7200560-G-A 7332519-G-A **
7340935-G-T 7472894-G-T **
7231148-C-A 7363107-C-A **
7281105-T-C 7413064-T-C **
7281106-G-A 7413065-G-A **
7289493-T-C 7421452-T-C **
7307574-C-A 7439533-C-A **
7332922-C-A 7464881-C-A **
7346088-C-A 7478047-C-A **
7529612-C-G 7661571-C-G **
7347418-A-G 7479377-A-G **
7349113-T-A 7481072-T-A **
7374879-C-A 7506838-C-A FT83401 **
7418470-C-A 7550429-C-A **
7436272-T-C 7568231-T-C **
7451294-CTTTT-C 7583253-CTTTT-C IR1_L 29×T**
7469359-T-A 7601318-T-A IR1_L **
5921426-G-A 6053385-G-A **
5864523-A-C 5996482-A-C **
14550825-C-A 12439026-C-A **
3250771-C-A 3382730-C-A **
2879166-G-A 3011125-G-A FGC59564FGC59565 **
2876833-C-A 3008792-C-A **
2916240-GT-G 3048199-GT-G 11×T**
3131846-G-T 3263805-G-T **
3157934-G-T 3289893-G-T **
3229574-T-C 3361533-T-C **
3271707-C-A 3403666-C-A **
2803607-C-A 2935566-C-A **
3274252-C-A 3406211-C-A **
3343333-G-A 3475292-G-A **
3455795-C-A 3587754-C-A **
3455881-C-A 3587840-C-A **
3501187-A-C 3633146-A-C **
3546087-C-A 3678046-C-A **
2810801-G-A 2942760-G-A **
2775358-T-C 2907317-T-C **
3557710-C-A 3689669-C-A **
9427843-T-C 9590234-T-C **
4371951-C-A 4503910-C-A **
10813158-C-G **
10813158-CCA-C **
10813184-C-T **
10813186-T-C **
10813196-G-GTAC **
15793048-C-A 13681168-C-A **
13858001-A-T 11737295-A-T **
10682784-C-A **
10819043-C-A **
14465312-C-A 12344585-C-A **
10033058-G-A 10195449-G-A **
2699689-A-G 2831648-A-G **
2729875-G-A 2861834-G-A **
3550568-ACAACT-A 3682527-ACAACT-A **
3591346-A-T 3723305-A-T **
5829871-C-A 5961830-C-A **
5039853-C-A 5171812-C-A **
4644050-C-A 4776009-C-A **
4833793-C-A 4965752-C-A **
4901632-T-G 5033591-T-G **
4919515-C-A 5051474-C-A **
4970055-G-T 5102014-G-T **
5035607-C-A 5167566-C-A **
5126140-C-A 5258099-C-A **
4442973-G-A 4574932-G-A **
5199653-T-C 5331612-T-C **
5332187-C-A 5464146-C-A **
5332281-AT-A 5464240-AT-A **
5576831-C-A 5708790-C-A **
5598489-C-A 5730448-C-A **
5613597-G-A 5745556-G-A **
4586017-C-A 4717976-C-A **
4437984-G-A 4569943-G-A **
3602661-C-A 3734620-C-A **
4139010-G-T 4270969-G-T **
3640407-G-T 3772366-G-T **
3667227-C-A 3799186-C-A **
3804715-A-G 3936674-A-G **
3804774-G-A 3936733-G-A **
3868107-G-T 4000066-G-T **
3889877-C-A 4021836-C-A **
4213214-C-A 4345173-C-A **
4394312-G-T 4526271-G-T **
4241779-C-A 4373738-C-A **
4244619-G-A 4376578-G-A **
4302913-C-A 4434872-C-A **
13487826-C-A 11332150-C-A **
13487816-G-A 11332140-G-A **
18812163-C-A 16700283-C-A **
4321351-G-T 4453310-G-T **
8255818-A-T 8387777-A-T **
15816390-C-A 13704510-C-A **
9960046-G-A 10122437-G-A PF2907 **
10880369-C-A **
10863242-G-T **
10866065-T-A **
17940788-CAAAT-C 15828908-CAAAT-C 7×AAAT**
10866074-T-A **
10866094-T-C **
10869196-T-C **
10880427-C-A **
10863200-C-T **
10880546-G-T **
10880638-C-A **
10887976-C-A **
10887995-T-C **
10893214-C-A **
10893377-G-T **
10863236-T-C **
10861286-C-A **
10899992-T-C **
10770692-C-T **
10686637-ACTCC-A **
10757019-C-A **
10760581-C-G **
8661664-T-C 8793623-T-C **
10770645-T-A **
10770657-G-A **
10772427-A-C **
10839604-C-A **
10780324-G-T **
10781300-A-G **
10786388-C-A **
10798351-CA-C **
10798353-T-TG **
10799562-TTCTATTTCATTCCTC-T **
10816596-C-A **
10893602-G-T **
10900155-C-A **
10686610-C-T **
13198758-C-A 11043082-C-A **
11037575-A-G **
11038116-A-T **
11038134-C-CT **
13194220-C-A 11038544-C-A **
13196362-C-A 11040686-C-A **
13196650-C-A 11040974-C-A **
13257976-C-A 11102300-C-A **
11018968-A-T **
13268891-C-CTT 11113215-C-CTT 11×T**
13275200-G-A 11119524-G-A **
13277318-C-A 11121642-C-A **
13302538-C-A 11146862-C-A **
13350997-C-A 11195321-C-A **
13410451-G-C 11254775-G-C **
13463960-C-A 11308284-C-A **
11018979-A-T **
11018963-A-T **
10929611-C-A **
10961426-C-T **
10939052-A-G **
10946063-G-T **
10947277-G-T **
10951319-A-T **
10959285-A-T **
10959294-C-T **
10973443-G-T **
11018647-A-C **
10973500-A-G **
10983782-G-C **
7164456-A-C 7296415-A-C CTS1038 PF4645 ****
10988759-C-A **
10992684-C-A **
11001844-CTG-C **
11009816-T-G **
10686623-T-CCCTAC **
10769330-G-A **
10686608-T-A **
9075978-A-G 9238369-A-G **
9996084-C-A 10158475-C-A **
14769437-G-A 12657506-G-A YSC0000259 Z2761 ****
9985945-C-A 10148336-C-A **
9965112-C-A 10127503-C-A **
10686593-TTCCAC-T **
22783159-C-A 20621273-C-A 17×A**
9919859-G-T 10082250-G-T **
9885049-C-T 10047440-C-T **
9865127-T-C 10027518-T-C **
9735635-TC-T 9898026-TC-T IR3_Prx **
9513024-T-C 9675415-T-C **
9461823-A-G 9624214-A-G **
9136706-C-A 9299097-C-A **
9088877-G-T 9251268-G-T **
9063787-C-A 9226178-C-A **
10006187-A-G 10168578-A-G **
3436405-G-T 3568364-G-T ****
8666191-G-A 8798150-G-A **
8672048-C-T 8804007-C-T **
7084354-T-C 7216313-T-C K517 ****
8697367-A-G 8829326-A-G **
8751226-T-C 8883185-T-C **
8760536-TTG-T 8892495-TTG-T **
2773757-G-T 2905716-G-T **
9048108-T-C 9210499-T-C **
8911901-G-T 9043860-G-T **
9055636-T-G **
9056471-T-C **
9108276-A-C **
9013239-C-A 9175630-C-A **
9025117-C-T 9187508-C-T **
10004774-C-A 10167165-C-A **
9958017-C-A 10120408-C-A **
10007694-C-A 10170085-C-A **
10659507-T-C **
10685542-C-A **
10678068-A-T **
10673838-C-A **
10673511-C-A **
10670878-C-A **
17802194-A-G 15690314-A-G BY46038 8×AAG**
10669018-A-T **
27791893-T-G 25645746-T-G P1_Y2 **
10667056-T-G **
10667055-C-A **
10661177-C-G **
10667057-A-T **
10659483-G-A **
10659477-C-G **
10020170-C-A 10182561-C-A **
9172681-T-G 9335072-T-G F192 **
10070367-C-A 10232758-C-A **
13217467-C-T 11061791-C-T ***
14626242-TTA-T 12514310-TTA-T ***
14786618-C-T 12674688-C-T F19250 ***
22303851-T-C 20141965-T-C DYZ19 ***
5219336-AGTGTGT-A 5351295-AGTGTGT-A 19×GT***
22962414-GTT-G 20800528-GTT-G 20×T***
8020221-CAAA-C,CAA 8152180-CAAA-C,CAA 22×A***
22485486-C-T 20323600-C-T DYZ19 ***
19187385-ATTTT-A,ATT 17075505-ATTTT-A,ATT 28×T***
23127414-CAAAAAAA-C 20965528-CAAAAAAA-C 24×A***
23397462-T-C 21235576-T-C ***
22422138-G-T 20260252-G-T DYZ19 ***
18951761-A-G 16839881-A-G ***
3112668-A-G 3244627-A-G ***
22028710-C-A 19866824-C-A ***
22296513-G-T 20134627-G-T DYZ19 ***
21814098-T-G 19652212-T-G ***
5007689-CAAAAA-C 5139648-CAAAAA-C 22×A***
7431104-C-G 7563063-C-G ***
6523383-C-T 6655342-C-T PF192 ******
4021930-CT-C,CTT 4153889-CT-C,CTT 15×T***
8314146-CTT-C,CT 8446105-CTT-C,CT 24×T***
8702810-GTTTT-G 8834769-GTTTT-G 21×T***
17090839-ATTTTTT-A 14978959-ATTTTTT-A 29×T***
13349484-T-A 11193808-T-A ***
9942043-ATTTT-A,ATT 10104434-ATTTT-A,ATT 28×T***
14142476-CATT-C 12021770-CATT-C 5×ATT***
7431103-G-A 7563062-G-A ***
13478057-A-G 11322381-A-G ***
13476527-T-A 11320851-T-A ***
4466853-T-C 4598812-T-C FGC38205 ***
9028893-TA-T,TAA 9191284-TA-T,TAA 18×A***
8750902-T-A 8882861-T-A ***
13223501-G-GGGA 11067825-G-GGGA ***
58973100-ATTCCATTCCATTAGT-A,ATTCCATTCCATTCGA 56826953-ATTCCATTCCATTAGT-A,ATTCCATTCCATTCGA ***
23414044-T-C 21252158-T-C ***
56835083-C-CCATTCCACTA ***
2950358-A-G 3082317-A-G ***
13477728-C-A 11322052-C-A ***
56707242-T-C ***
9991303-G-T 10153694-G-T ***
8349288-C-A 8481247-C-A ***
8379466-C-A 8511425-C-A ***
17502864-G-T 15390984-G-T ***
8810101-C-A 8942060-C-A ***
8897115-C-A 9029074-C-A ***
17375530-C-A 15263650-C-A ***
8913482-G-T 9045441-G-T ***
16957758-T-C 14845878-T-C FT102195 ***
9348079-C-T 9510470-C-T ***
9789340-G-GAT 9951731-G-GAT ***
9952395-C-A 10114786-C-A ***
16627458-C-G 14515578-C-G ***
10034224-G-A 10196615-G-A ***
17859440-C-T 15747560-C-T ***
16045240-C-A 13933360-C-A ***
15921663-C-A 13809783-C-A ***
10669545-G-C ***
10688045-C-A,CGG ***
15257562-T-C 13145646-T-C ***
14880219-C-A 12768289-C-A ***
10880316-C-A ***
14696893-A-T 12584959-A-T ***
10909813-C-A ***
14180694-A-G 12059988-A-G ***
14175981-C-A 12055275-C-A FT116516 ***
10987811-T-A ***
13710943-C-A 11555267-C-A ***
8139731-A-G 8271690-A-G ***
17944308-A-ACAG 15832428-A-ACAG ***
28598602-C-A 26452455-C-A ***
6000790-C-A 6132749-C-A ***
28485239-A-G 26339092-A-G ***
9952390-C-A 10114781-C-A ***
27756185-C-A 25610038-C-A P1_Y2 ***
2831983-C-A 2963942-C-A ***
2840099-CAA-C,CA 2972058-CAA-C,CA 20×A***
23625824-C-A 21463938-C-A ***
23572587-C-A 21410701-C-A ***
23491149-C-A 21329263-C-A ***
23189415-C-A 21027529-C-A ***
4936897-C-A 5068856-C-A ***
5317486-A-T 5449445-A-T ***
22556686-C-A 20394800-C-A ***
5761157-C-A 5893116-C-A ***
6132394-C-A 6264353-C-A ***
7852666-A-G 7984625-A-G BY157469 ***
22103241-A-G 19941355-A-G ***
6359613-C-A 6491572-C-A ***
6541089-C-A 6673048-C-A ***
21477148-C-A 19315262-C-A ***
21244958-C-A 19083072-C-A ***
21139710-C-A 18977824-C-A ***
20707670-C-A 18545784-C-A P4_Prx ***
13478098-G-T 11322422-G-T ***
19378196-C-A 17266316-C-A ***
19259733-C-A 17147853-C-A ***
18895245-C-A 16783365-C-A ***
7543498-C-A 7675457-C-A ***
18712700-C-A 16600820-C-A ***
13141968-C-T 10631454-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual24108129-C-T21961982-C-T143 reads total - 118C and 25T.
Manual26722140-A-C24575993-A-C36 reads total - 8 show A, 28 show C.
Manual14611351-AG-A12499557-AG-A60 reads show the deletion, one does not.
Manual19798357-T-C17686477-T-C16 reads total - 9C, 7T.
Manual18382652-T-A16270772-T-AJust two reads, but both are A.
Manual23488835-A-T21326949-A-T7 good reads and 5 are T. To the immediate right is a long A homopolymer. The ends of the reads at the opposite side of the poly A don't look like they belong there.
Manual24947074-C-T22800927-C-T48 reads total. 36C, 11T and one misaligned G.
Manual22323215-T-A20161329-T-A14 reads - 13 with A, 1 with T. The one with the T comes with a couple extra mutations as well.
Manual5188687-C-G5320646-C-GJust one read, a G.
Manual7449269-T-C7581228-T-C4A 70C 11G 326T. The A and G reads are misaligned.
Manual8379144-CTTCT-C8511103-CTTCT-C9 reads total. 7 are positive, 2 look as though they should be aligned elsewhere.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
DF21/S1921324141111-14121212131329179-1011112515192915-15-17-17111119-231615181836-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
S30581324141011-14121212131329179-1011112515192915-15-17-17111119-231615181836-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211121211912121011113012132413101020151913241712152412231810141791211
S4261324141011-14121212131329179-1011112515193015-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526191311121211912121011113012132413101020151913231712152412231810141791211
S1901324141011-14121212131329179-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311121211912121011113012132413101020151913231712152412231810141791211
FGC32151324141011-14121212131329189-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311121211912121011113012132413101020151913231712152412231810141791211
ZZ231324141011-14121212131329189-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311131211913121011113012132413101020151913231712152412231810141791211
Y124641324141011-14121212131329189-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311131211913121011113012132413101020151913231712152412231810141791211
ZZ251324141011-14121212131329189-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311131211913121011113012132413101020151913231712152412231810141791211
Z179981324141011-14121212131329189-1011112515193013-15-17-17111019-231615181838-38121211915-1691010810101222-231610121215811222014121113111112123115915122526201311131211913121011113012132413101020151913231712152412231810141791211
Z179991324141011-14121212131329199-1011112515193013-15-17-17111019-231615181836-36121211915-1691010810101222-231610121216811222014121113111112123115915122526201311131211913121011113012132413101020151913231712152412231810141791211
Z180001324141011-15121212131329199-1011112515193013-15-17-17111019-231615181836-36121211915-1691010810101222-231610121216811222014121114111112123115915122526201311131211913121011113012132413101020151913231712152412231810141791211
Z367491324141011-15121212131329199-1011112515193013-15-17-17111019-231615181836-36121211915-1691010810101222-231610121216811222014121114111112123115915122426201311131211913121011113012132413101020151913231712152412231810141791211
Z367481324141011-15121212131329189-1011112515193013-15-17-17111019-231515181836-36121211915-1691010810101222-231610121216811222014121114111112123015915122426201311131211913121011113012132413101020151913231712152412231810141791211
Y313901324141011-15121212131329189-1011112515193113-15-17-17111019-231515181836-36131211915-1691010810101222-231610121216811222014121114111112123015915122526201311131211913121011113012132413101020151913231712152412231810141791211
Bogle1324141011-15121212131329189-1011112515193213-15-17-17111019-231515181836-36131211915-1691010810101222-231610121216811222014121114111112123015915122526201311131211913121011113012132413101020151913231712152412231810141791211

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 3857771045646975356837601021
Kit: 385777936202376600677569619
Kit: 3857771479099892691688242675
Used in age calculations1479099892691688242675
Counts of SNPs65
Variant counts last updated 2019-10-28 04:11:58.



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