Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Blocks	Names	Region	McDonald BED	combBED	STR	FTDNA 370153	BigY3 370153	BigY2 370153
6270725-T-C	6402684-T-C			IR3_Dst				***	A*	A*
24266189-G-A	22120042-G-A			P3_b1				***	A*	A*
26231642-T-A	24085495-T-A			P1_Y1				***	A*	A*
28816569-G-C	26670422-G-C								A*	A*
	56860703-G-A								A*
20362564-C-CT	18200678-C-CT			P5_Dst			11×T		A*
6431385-G-C	6563344-G-C								A*
23976848-TTG-T	21830701-TTG-T						8×TG	+	+	+
7714984-CTGTTTGTT-C	7846943-CTGTTTGTT-C	7522818-A-G					10×TGTT	+	**	***
6120262-T-C	6252221-T-C		BY59130					+		+
7855265-G-A	7987224-G-A		FGC35842		Y	Y		+	+	+
8905592-A-G	9037551-A-G		FGC35843					+	+	+
14568425-C-G	12456625-C-G		BY96512		Y			**	+	+
15993557-C-G	13881677-C-G		FGC35844		Y	Y		+	+	+
18092618-C-G	15980738-C-G		Y73042		Y	Y		+	+	+
18092626-T-A	15980746-T-A		Y73043		Y	Y		+	+	+
19009044-G-A	16897164-G-A		FGC35845		Y	Y		+	+	+
19036575-G-T	16924695-G-T		FGC35846		Y	Y		+	+	+
22472328-C-A	20310442-C-A	BY202408	A2045	DYZ19				+	**	**
22949570-T-C	20787684-T-C		FGC35848		Y	Y		+	+	+
23756965-AGCAGT-A	21595079-AGCAGT-A							+	+	+
	10805537-T-C		FT432009						+	**
22483793-A-G	20321907-A-G		FGC35847	DYZ19						+
3727673-G-T	3859632-G-T		FT148333						+
4120801-A-G	4252760-A-G		FT148393						+
4937681-A-G	5069640-A-G		FT148511						+
5862304-AT-A	5994263-AT-A								+
13947912-A-C	11827206-A-C		FT149091		Y				+
18058128-C-T	15946248-C-T		FT149601		Y				+
22339465-G-T	20177579-G-T			DYZ19				***		*
22041035-C-CCA	19879149-C-CCA						10×CA		*
	10769382-C-CTCCATTCCAT								*
16583910-C-CTTATTTAT	14472030-C-CTTATTTAT						10×TTAT			**
13467565-T-C	11311889-T-C		BY85774						**
15012591-C-T	12900679-C-T									**
7832170-C-CTT	7964129-C-CTT						12×TCTT			**
26153962-GAA-G	24007815-GAA-G			P1_Y1			15×A			**
16635871-C-A	14523991-C-A		S18586							**
23833034-A-C	21671148-A-C									**
16498271-G-A	14386391-G-A							**
7391809-C-A	7523768-C-A									**
14080035-G-GATAT	11959329-G-GATAT						29×AT			**
19293712-C-T	17181832-C-T		Z8417 AM00217 AMM126							**
19250664-GTT-G	17138784-GTT-G						45×T			**
23223343-T-A	21061457-T-A									**
19293689-G-A	17181809-G-A									**
16157704-TAGAA-T	14045824-TAGAA-T	Y36580		P8_Dst						**
13139806-A-C	10629292-A-C								**
	10790271-T-C									**
	10796667-C-A									**
	11030161-TCCAA-T									**
	10785825-C-A									**
13489007-A-T	11333331-A-T									**
13487767-A-C	11332091-A-C									**
	10746999-G-GTTCCA									**
	10785848-T-A									**
4178061-C-A	4310020-C-A									**
19127681-C-A	17015801-C-A									**
15012570-C-T	12900658-C-T									**
	10760345-CACTGT-C									**
	10770596-T-TCCGCA									**
	10880298-A-G									**
17707369-T-C	15595489-T-C									**
	10654459-T-A									**
	10654464-C-A									**
	10654467-C-T									**
	10803959-T-A									**
	10803988-C-T									**
	10804008-C-T									**
	10804015-G-C									**
	10804016-C-A									**
	10804028-A-T									**
13460515-C-T	11304839-C-T									**
	10655066-CTCCAT-C									**
8556313-G-GTTT	8688272-G-GTTT						17×T			**
21132673-A-T	18970787-A-T									**
	10932702-T-C									**
24530886-A-G	22384739-A-G			P3_t2						**
19293693-A-G	17181813-A-G									**
13205374-C-A	11049698-C-A									**
17489751-C-A	15377871-C-A									**
	10950454-C-T									**
	11036137-C-T									**
	11036149-C-T									**
	10756269-TTCCCA-T									**
	10770507-C-T									**
24240797-C-T	22094650-C-T			P3_b1						**
	56707194-GAA-G									**
	56707200-AATGGAAACAAATG-A									**
19293668-G-C	17181788-G-C									**
19293718-T-C	17181838-T-C									**
5755120-C-A	5887079-C-A									**
14529234-C-CAA	12417435-C-CAA						15×A			**
5785451-T-A	5917410-T-A									**
7613831-CAG-C	7745790-CAG-C									**
7534444-G-T	7666403-G-T									**
	11643838-A-G			DYZ17						**
	10937640-C-A									**
24296172-T-C	22150025-T-C			P3_t1					**
	10889301-T-G									**
16051179-C-A	13939299-C-A									**
	10971241-A-G									**
13461271-G-C	11305595-G-C									**
	10999873-C-A									**
22080579-A-T	19918693-A-T									**
	10950459-CACCACTCTAA-C									**
9462040-G-T	9624431-G-T									**
	10682596-C-G									**
5774988-C-A	5906947-C-A									**
	10785861-C-G									**
23438864-A-G	21276978-A-G									**
21402213-TTTAC-T	19240327-TTTAC-T									**
13460488-G-A	11304812-G-A									**
17203318-C-A	15091438-C-A									**
20751847-T-C	18589961-T-C			P4_Prx						**
28760171-C-A	26614024-C-A									**
13856500-C-A	11735794-C-A			DYZ17						**
14549126-C-A	12437327-C-A									**
15698547-C-A	13586667-C-A									**
	11030271-G-A									**
	10889295-T-A									**
	10654461-C-G									**
	10987747-T-G									**
	10987758-C-A		BY27107							**
	10987763-C-T									**
21208971-AGAGC-A	19047085-AGAGC-A									**
6992544-C-G	7124503-C-G									**
27618294-T-C	25472147-T-C			P1_Y2						**
21602768-T-G	19440882-T-G									**
	11033815-C-A									**
22996010-C-A	20834124-C-A									**
	11036165-C-A									**
23825064-ATTTTTT-A	21663178-ATTTTTT-A						25×T			**
19312428-C-A	17200548-C-A									**
	10902181-C-G									**
24264545-A-C	22118398-A-C			P3_b1						**
	11019473-C-A									**
	10785878-TC-T									**
	10785882-C-G									**
	10785885-C-A									**
	10785898-C-T									**
	10785906-T-C									**
	10785908-A-G									**
	10785914-T-C									**
	10785918-T-G									**
	10785920-A-C									**
	10785926-A-T									**
13468061-G-A	11312385-G-A									**
	10752439-C-A									**
19811679-C-A	17699799-C-A			P5_Prx					**
	10950475-T-A									**
7310425-A-G	7442384-A-G									**
	10924415-T-TGCAAA									**
19293621-G-A	17181741-G-A									**
19293636-C-T	17181756-C-T									**
	11036087-C-G									**
	11036100-C-CATTCT									**
15701041-T-C	13589161-T-C									**
	10770502-C-T									**
15898796-TG-T	13786916-TG-T									**
	10785922-A-C									**
17538706-G-A	15426826-G-A								**
7704726-C-A	7836685-C-A									**
20446462-G-GT	18284576-G-GT			P5_Dst						**
6646806-C-A	6778765-C-A									**
13926620-C-A	11805914-C-A									**
10032344-GTT-G	10194735-GTT-G						12×T			**
10037708-C-A	10200099-C-A									**
3178185-C-A	3310144-C-A									**
7336263-C-A	7468222-C-A									**
2852582-A-T	2984541-A-T									**
3341503-C-A	3473462-C-A									**
3696622-T-G	3828581-T-G									**
3696658-A-G	3828617-A-G									**
3696712-G-T	3828671-G-T									**
4017201-A-G	4149160-A-G									**
4087522-C-A	4219481-C-A									**
4087528-C-A	4219487-C-A									**
4123587-A-T	4255546-A-T									**
4208934-C-A	4340893-C-A									**
4243703-T-C	4375662-T-C									**
4357390-T-A	4489349-T-A									**
4357404-T-C	4489363-T-C									**
4433984-TA-T	4565943-TA-T									**
4517885-C-G	4649844-C-G									**
4609714-C-A	4741673-C-A									**
4920163-T-C	5052122-T-C									**
5048142-C-A	5180101-C-A									**
5098257-G-T	5230216-G-T									**
5205262-T-C	5337221-T-C									**
5292998-T-C	5424957-T-C									**
5458714-C-A	5590673-C-A									**
5601897-G-T	5733856-G-T									**
5612636-G-A	5744595-G-A									**
5690153-A-T	5822112-A-T									**
5814371-C-A	5946330-C-A									**
5817436-A-G	5949395-A-G									**
5864658-A-C	5996617-A-C									**
6010218-A-G	6142177-A-G									**
6010265-C-T	6142224-C-T									**
6050843-A-G	6182802-A-G									**
6073624-G-T	6205583-G-T									**
6240908-T-C	6372867-T-C			IR3_Dst						**
6267623-CA-C	6399582-CA-C			IR3_Dst						**
6368976-G-T	6500935-G-T									**
6392688-G-A	6524647-G-A									**
6510606-C-A	6642565-C-A									**
6654011-A-G	6785970-A-G									**
6922916-A-G	7054875-A-G									**
7008241-T-C	7140200-T-C									**
7012394-C-T	7144353-C-T									**
7020666-C-A	7152625-C-A									**
7029778-C-A	7161737-C-A									**
7093711-T-G	7225670-T-G									**
7142208-C-A	7274167-C-A									**
7188210-T-C	7320169-T-C		FT362640							**
7221417-T-C	7353376-T-C									**
7235344-T-C	7367303-T-C									**
7255386-A-C	7387345-A-C									**
7281821-A-C	7413780-A-C									**
7335667-T-A	7467626-T-A									**
7428219-C-T	7560178-C-T									**
7436192-G-A	7568151-G-A									**
7436194-T-C	7568153-T-C									**
7436200-T-C	7568159-T-C									**
7444097-C-A	7576056-C-A		FT4749							**
8181213-TG-T	8313172-TG-T									**
8290851-A-T	8422810-A-T									**
8296919-A-T	8428878-A-T									**
8408480-C-T	8540439-C-T									**
8972592-T-C	9134983-T-C									**
9461942-C-A	9624333-C-A									**
9558050-A-G	9720441-A-G			IR3_Prx						**
9804698-T-A	9967089-T-A									**
10002344-T-C	10164735-T-C									**
10018098-C-A	10180489-C-A									**
	10664116-T-C									**
	10665285-G-T									**
	10678607-C-A									**
	10687053-C-T									**
	10687685-C-A									**
	10752468-C-A									**
	10756300-T-C									**
	10756319-T-C									**
	10765617-C-A									**
	10772586-C-A	BY66028	FT219123							**
	10778170-T-C									**
	10785030-C-A									**
	10785909-C-T									**
	10787187-C-A									**
	10790260-A-C									**
	10790272-T-A									**
	10790283-C-T									**
	10796672-C-CGGATG									**
	10805269-G-T									**
	10809324-A-T		FT225300							**
	10812445-TC-T									**
	10822558-T-C									**
	10828350-T-C									**
	10852370-A-G									**
	10870264-C-T									**
	10872466-C-A									**
	10880306-C-A									**
	10883544-C-A									**
	10889245-T-C									**
	10889260-T-C									**
	10918040-T-C									**
	10936798-A-C									**
	10969814-C-A									**
	10971239-C-T									**
	10971255-C-T									**
	10971260-C-CGT									**
	10971262-TTC-T									**
	10976359-C-A									**
	10988044-C-A		FT439333							**
	10993910-T-A									**
	11016441-C-A									**
	11018239-A-G									**
	11019730-C-A									**
13207979-C-A	11052303-C-A									**
13229586-G-A	11073910-G-A		FT441420							**
13317177-C-A	11161501-C-A									**
13385114-C-A	11229438-C-A									**
13460547-C-A	11304871-C-A									**
13460585-C-CA	11304909-C-CA									**
13460587-T-A	11304911-T-A									**
13460589-G-T	11304913-G-T									**
13460590-G-T	11304914-G-T									**
13460593-G-C	11304917-G-C									**
13504745-G-A	11349069-G-A									**
13601854-G-A	11446178-G-A									**
	11646245-A-ATCAACCCCTT			DYZ17						**
	11649885-T-A			DYZ17						**
	11671324-T-C			DYZ17						**
	11672493-C-G			DYZ17						**
	11676425-C-A			DYZ17						**
13872003-A-T	11751297-A-T									**
13894258-A-C	11773552-A-C									**
13915568-C-A	11794862-C-A									**
13933041-A-T	11812335-A-T									**
13962069-T-G	11841363-T-G									**
14160367-C-T	12039661-C-T									**
14187043-GA-G	12066337-GA-G									**
14225434-T-C	12104728-T-C									**
14239418-A-G	12118712-A-G									**
14355070-C-A	12234365-C-A									**
14356305-G-A	12235600-G-A									**
14398285-T-C	12277581-T-C									**
14421869-A-G	12301144-A-G									**
14430549-G-A	12309822-G-A									**
14474830-C-A	12354099-C-A									**
14483681-G-A	12362950-G-A									**
14485369-G-T	12364638-G-T									**
14581043-C-A	12469243-C-A									**
14607878-G-T	12496080-G-T									**
14681960-G-C	12570026-G-C									**
14823530-T-C	12711597-T-C									**
14989247-A-G	12877332-A-G									**
15150776-G-A	13038863-G-A									**
15191136-T-C	13079222-T-C		Y93227							**
15239076-C-A	13127162-C-A									**
15641680-A-G	13529800-A-G									**
15682727-T-C	13570847-T-C									**
15731222-C-A	13619342-C-A									**
15786066-A-G	13674186-A-G									**
15816338-C-A	13704458-C-A									**
15839613-C-A	13727733-C-A									**
15927139-C-A	13815259-C-A									**
15967502-CCTT-C	13855622-CCTT-C									**
16029082-C-A	13917202-C-A									**
16084050-G-T	13972170-G-T									**
16245317-A-G	14133437-A-G									**
16345021-C-A	14233141-C-A									**
17363044-A-G	15251164-A-G									**
17434023-A-G	15322143-A-G									**
17489860-A-G	15377980-A-G									**
17511774-C-A	15399894-C-A									**
17737813-T-C	15625933-T-C									**
17840128-C-T	15728248-C-T									**
17926625-T-C	15814745-T-C		FT99490							**
18194301-C-A	16082421-C-A									**
18278110-G-A	16166230-G-A			P6_Prx						**
18659900-A-G	16548020-A-G									**
18710228-C-A	16598348-C-A									**
19235123-T-C	17123243-T-C									**
19258960-C-A	17147080-C-A									**
19293623-GC-G	17181743-GC-G									**
19293659-G-C	17181779-G-C									**
19293680-C-T	17181800-C-T									**
19293719-G-A	17181839-G-A									**
19438524-G-A	17326644-G-A									**
19754845-C-T	17642965-C-T			P5_Prx						**
21211313-CA-C	19049427-CA-C						8×A			**
21270351-G-A	19108465-G-A									**
21340009-C-A	19178123-C-A									**
21371559-C-A	19209673-C-A									**
21515682-G-A	19353796-G-A									**
21545346-G-T	19383460-G-T									**
21888276-C-A	19726390-C-A									**
22085769-G-A	19923883-G-A									**
22211706-C-A	20049820-C-A		FT63554							**
22263872-T-A	20101986-T-A			DYZ19						**
22281941-C-G	20120055-C-G		FGC81814	DYZ19						**
22517332-A-C	20355446-A-C									**
22536329-A-T	20374443-A-T									**
22587022-C-A	20425136-C-A									**
23092778-G-A	20930892-G-A									**
23186175-C-A	21024289-C-A									**
23321860-T-G	21159974-T-G									**
23421058-T-TC	21259172-T-TC									**
23997614-C-A	21851467-C-A									**
24363782-C-A	22217635-C-A									**
24530877-T-A	22384730-T-A			P3_t2						**
24530900-T-TATA	22384753-T-TATA			P3_t2						**
24905100-T-A	22758953-T-A			g1						**
25395691-G-T	23249544-G-T			P2_r2						**
25576931-C-T	23430784-C-T			P1_gr1						**
26565457-C-A	24419310-C-A			P1_g2						**
27618292-C-G	25472145-C-G			P1_Y2						**
28111514-A-T	25965367-A-T			P1_Y2						**
28461623-A-G	26315476-A-G									**
28496176-C-G	26350029-C-G									**
28504736-T-C	26358589-T-C									**
28568098-A-C	26421951-A-C									**
28583788-C-A	26437641-C-A									**
28643845-G-A	26497698-G-A									**
28650801-C-T	26504654-C-T									**
28699715-C-A	26553568-C-A		FT366487							**
28761379-TC-T	26615232-TC-T									**
28812342-A-AT	26666195-A-AT									**
20434844-G-T	18272958-G-T			P5_Dst					**
13453340-A-ACTG	11297664-A-ACTG								**
18511195-CAAAA-C	16399315-CAAAA-C			P6_Dst			30×A		**
13467586-A-G	11311910-A-G								**
20460428-ATTTT-A	18298542-ATTTT-A			P5_Dst			17×T		**
13467545-C-A	11311869-C-A								**
13467564-C-G	11311888-C-G								**
13467621-A-G	11311945-A-G								**
8824978-T-C	8956937-T-C								**
17065561-T-C	14953681-T-C								**
17519499-T-C	15407619-T-C								**
19601015-A-G	17489135-A-G			P5_Prx					**
21747378-T-C	19585492-T-C								**
24893408-G-A	22747261-G-A			g1					**
28147140-A-G	26000993-A-G			P1_b4					**
28147159-C-CGTGCAG	26001012-C-CGTGCAG			P1_b4					**
28147172-A-G	26001025-A-G			P1_b4					**
16119959-T-TTTTCTTTC	14008079-T-TTTTCTTTC			P8_Prx			12×TTTC	***
13637759-C-T	11482083-C-T		FGC1596					***
10039290-A-G	10201681-A-G							***
18511602-A-T	16399722-A-T		BY44481	P6_Dst					***
10008113-C-T	10170504-C-T							***
18278343-GAAAC-G	16166463-GAAAC-G			P6_Prx				***
24075387-C-G	21929240-C-G			P3_b1				***
25207215-G-C	23061068-G-C			g1				***
7361986-A-T	7493945-A-T									***
19138332-C-CCT	17026452-C-CCT						9×CT		***
18070191-CTT-C,CT	15958311-CTT-C,CT						15×T		***	***
13478242-C-A	11322566-C-A									***
	10937662-C-T									***
	10937674-C-G									***
	10937701-A-T									***
19393098-CTTTT-C	17281218-CTTTT-C						30×T		***
	10821892-C-A									***
13461220-G-T	11305544-G-T									***
	10868087-TC-T								***
	10969253-C-T									***
	10969255-C-A									***
	10969272-A-ACTGTG									***
	10969283-C-T									***
	10969290-C-T									***
	56830010-T-A									***
	10845642-T-A,C									***
13461235-G-C	11305559-G-C									***
	10950452-C-T									***
	10845673-T-A									***
22768819-C-CTT	20606933-C-CTT						20×T		***
10023171-C-A	10185562-C-A									***
13478361-G-A	11322685-G-A								***
15412771-CTT-C,CT	13300891-CTT-C,CT						15×T			***
	56826001-A-G									***
	56826004-C-T									***
3622072-C-A	3754031-C-A									***
23435682-CTTTTT-C,CTTTT	21273796-CTTTTT-C,CTTTT						21×T		***
28596698-GTTTT-G	26450551-GTTTT-G						24×T		***
23006963-C-A	20845077-C-A									***
	10671050-C-T									***
21092191-CTTTTTTT-C	18930305-CTTTTTTT-C						18×T			***
4547704-A-G	4679663-A-G									***
5421018-T-C	5552977-T-C									***
7436186-G-T	7568145-G-T									***
7489124-G-T	7621083-G-T			IR1_L						***
7896715-T-C	8028674-T-C									***
8214303-G-T	8346262-G-T									***
8389569-CT-C,CTT	8521528-CT-C,CTT						25×T			***
	10753145-G-T									***
	10763332-TTTCC-ATTCC,T									***
	10887987-C-G,T									***
	10950409-T-A,C									***
	11013262-C-A									***
13488747-A-G,T	11333071-A-G,T									***
	11656448-C-A			DYZ17						***
	11659150-CAGAAGGTAAT-C			DYZ17						***
	11663329-T-A			DYZ17						***
14300482-A-T	12179776-A-T									***
14867109-T-A	12755179-T-A									***
14992292-C-A	12880377-C-A									***
16063415-A-G	13951535-A-G									***
16926974-C-A	14815094-C-A									***
18659818-A-T	16547938-A-T									***
19415291-C-T	17303411-C-T									***
20334975-G-T	18173089-G-T			P5_Dst						***
21482766-T-C	19320880-T-C		Y76577							***
21912133-T-C	19750247-T-C									***
23756962-A-AGTC	21595076-A-AGTC								***	***
	56685619-T-A									***
5430808-CAAAAA-C	5562767-CAAAAA-C						25×A		***
21846452-CTT-C,CT	19684566-CTT-C,CT						26×T		***
27462488-TAC-T	25316341-TAC-T			P1_Y2			15×AC		***
23098816-CAAAA-C,CAAA	20936930-CAAAA-C,CAAA						25×A		***
24423236-G-T	22277089-G-T								***
24423235-A-T	22277088-A-T								***
5088451-CTTT-C,CTT	5220410-CTTT-C,CTT						27×T		***
7232804-C-T	7364763-C-T								***
14727319-AT-A,ATT	12615387-AT-A,ATT						23×T		***
16095946-G-T	13984066-G-T								***
16095949-A-AT	13984069-A-AT								***
18577267-A-G	16465387-A-G								***
22692366-A-G	20530480-A-G								***
24423225-ATA-A,ATC	22277078-ATA-A,ATC								***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Clark

Tree Position

Unique Mutations