HIDE SNP NAMES

The Big Tree: R-FGC11388

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC78762 > ZZ19 > Z34609 > Z2571 > FGC11380 > FGC11388 (Rox2)

https://sites.google.com/site/rox2cluster/

There are many SNPs in this block that show up in the FGC tested men, but not the BigY tested men. That list of SNPs is: FGC11370, FGC11371, FGC11372, FGC11374, FGC11375, FGC11376, FGC11377, FGC11381, FGC11382, FGC11383, FGC11384, FGC11385, FGC11386, FGC11390, FGC11391, FGC11392, FGC11396, FGC11397, FGC11399, FGC11400, FGC11401, FGC11404, FGC11407, FGC12952, FGC11416 and FGC11418. All of these SNPs except for FGC11416 and FGC11418 show up in the 1000 genomes person, HG00107. Future testing is necessary to determine which of these SNPs belong in this block.
FGC11388 Y8837
FGC11368 Y8838
Y8398 BY741
FGC11373 Y8839
Z2735
FGC11395 Y8842
FGC11394 Y8400
15212040-G-GA
FGC11398 Y8403
FGC11393 Y8405
FGC11411 Y8406
FGC11369 Y8407
19315386-TTCATCATTG-T
FGC11378 Y8408
FGC11379 Y8409
FGC11413
FGC11389 Y8840
BY31278 FGC68443
FGC11367 Y8399
FGC11387 Y8401
FGC68444 BY28846
FGC11374 Y8397
FGC11376
FGC11375
FGC11400
FGC11390
FGC11401
FGC11381
FGC11391
FGC11392
FGC11397
FGC11399
FGC11370
FGC11372
FGC11386
FGC11385
FGC11404
FGC11377 Y8402
FGC12952
FGC11384
FGC11382 Y8404
FGC11371
FGC11396
FGC11383
FGC11416
FGC11418
FGC11414
Y23589
BY21590
Y23590
BY43192
Y23846
Y69356
16259-A-G
16286-G-A
18105-A-T
Y77999
Y73332
Y73337
Y60859
BY69194
Y129234
BY196164
BY21591
BY49857
BY49871
BY49889
BY49913
BY49969
BY49975
16965701-GC-G
BY177775
BY65304
BY84416
BY101692
BY146699
FGC11407
FGC11419
7163063-C-T
FGC12953
FGC12957
FGC12959
BY170595
FGC12961
FGC12963
FGC12965
19121768-CTCCTCCTCCTCTTTGTT-C
A17453
A16311
BY21588
12354952-TTTAAGA-T
BY21589
BY21584 A16155
BY21586 A17692
20346081-G-C
BY21585 A16333
A19926
A16335
20092868-T-G
BY30486
BY21587
A18348
A18351
A19501
ZS11772
A19502
A19504
BY70966
BY73792
BY90405
BY93137
BY98051
14662610-TA-T
BY117649
BY121708
BY144044
Y33105
BY21592
Y33106
Y32852
Y32851
Y51312
BY157355
BY157395
BY17068
BY185972
BY97471
BY102650
BY145116
BY145620
BY185973
Y17787
Y17485
Y17788
Y17486
Y17484
FGC45672
Y21522
Y20979
Y21523
BY13171
Y21521
BY86200
Y59990
FT14435
FT22697
Y55645
CTS5809
Y30689
Y30752
BY45630
Y83213
Y86337
Y107879
BY21578 A12539
BY21581 A12543
BY21582 A12570
BY21579 A12541
BY21580 A12542
BY21593
BY5750
11768-G-C
11769-G-T
BY30719
BY30716
11862840-AGAAGGAAG-A
Z35825
BY30717
20304978-G-T
BY221798
FGC39762
FGC39763
7780610-TA-T
FGC39765
FGC39766
FGC39767
FGC39768
FGC39769
FGC39770
FGC39771
FGC39772
FGC39773
FGC39774
A7378 FGC39775
FGC39776
13914-C-T
BY166898
BY168115
BY168311
BY193233
FT33483
BY166504
K498
BY194976
BY195508
Westermark
416295 416295
Andersson
IN13715
Dahlberg
IN37948
Nilsson
328628
Panna
N3285
Svensson
630251
Svensson
IN33823
Persson
330933 330933
Hedman
367358 367358
Robertshaw
273347 273347
Robertshaw
376643
Oddy
729562
Smithson
223803 223803
Falkiner
583270
Dickinson
134765 WBAFF
Cockbain
108857
Turner
N3036 GYBGZ
Wilson
92933
Moore
B76932 B76932
O'Connell
271969
White
146399
Campbell
268175 268175
Campbell
444524
Coulman
66969 66969
Dods
93587
Dodd
533969
Dodds
B37367 B37367
Brown
359501
Whan
187534
Shed
B309746
Shed
843229
Millican
N28259
Drysdale
91628
Seton
476439 476439
Robertson
204779 204779
Whyte
185702 185702
Dickson
E14895
1k Genomes
HG00107
McCauley
342681 FASY9
McCauley
242251
McCauley
382774 382774
McCauley
189006 189006
McCauley
421619 6CXZ7
McCauley
848802
unknown
250758
McAuley
N18197 4DTEX
McAuley
41432
McCauley
115452 115452
McCauley
496137 N9F63
MacAuley
549990
McCawley
B47510 B47510
Good
220228
McCaulley
365749 365749
unknown
464642
McMath
185183
Dulany
82551
McAfee
309179
Hickey
66501 66501
Hickey
535659 535659
Hickey
107639 107639
Hickey
221844
Simpson
B24208
Simpson
436237
Phelps
433304
Saylor
800868
Corner
N3461
Scott
726794
Turrentine
453584
Drennan
B351108
Newton
195076
Rox2

Overlay STR Data for an STR:


Porter
N28007
Oakes
H2290
Williamson
196041
A red background is used for men whose data has not yet been fully analyzed. His position on the tree is not yet final, and will in general be downstream of the current position. He may not be positive for all the SNPs/INDELs in the block he descends from.

Men whose NGS data have been fully analyzed are indicated with a grey background color.

Those men with a grey background and a pink bar to their left have been finalized, but haven't gone through as much scrutinity as earlier kits have. In particular, no search has been made for recurrent SNPs or other unusual mutations. For the vast majority of kits, this has no effect at all, but I will review them as necessary in the future.

CTS4296
22233413-G-A
Mutations written with a red background fall within a region of the Y chromosome, such as the palindromic region, which has left the position of the mutation ambiguous. The true mutation may be at the indicated position, or at any one of a number of alternate positions.

Z18068
SNP names which are bold grey indicates that their exact position on the tree is uncertain. This SNP may belong further upstream or all downstream branches may not be positive for it. This is often the case for SNPs found in FGC kits or 1kG kits in regions not covered by BigY tests.