Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > S5488 > BY518 > FGC33060 > BY13009

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
320307
22243106-C-T 20081220-C-T DYZ19 A+
26328592-C-T 24182445-C-T P1_Y1 A*
16115512-G-A 14003632-G-A P8_Prx A*
18375575-G-A 16263695-G-A P6_Prx A*
20708285-G-A 18546399-G-A P4_Prx A*
20761445-T-G 18599559-T-G P4_Prx A*
24288295-G-A 22142148-G-A P3_t1 A*
26199028-T-C 24052881-T-C P1_Y1 A*
15717053-A-G 13605173-A-G BY192624 YY+
22850472-G-T 20688586-G-T BY192803 YY+
18085766-T-C 15973886-T-C BY192697 Y+
22192866-G-C 20030980-G-C BY192794 YY+
18129464-G-A 16017584-G-A BY192698 YY+
14287131-T-C 12166425-T-C BY192572 YY+
21855707-G-A 19693821-G-A BY192776 YY+
13836498-G-A 11715792-G-A BY192549 +
8239178-T-C 8371137-T-C BY192498 YY+
21422995-C-T 19261109-C-T BY192764 YY+
14187894-G-C 12067188-G-C BY192565 YY+
18741679-C-A 16629799-C-A BY192712 YY+
18034034-G-A 15922154-G-A BY192695 YY+
13210298-G-A 11054622-G-A BY209945 +
13202382-A-G 11046706-A-G BY209906 +
23621245-C-T 21459359-C-T BY192825 YY+
8554584-C-A 8686543-C-A BY192514 YY+
8625355-A-G 8757314-A-G BY192520 YY+
8795401-CG-C 8927360-CG-C +
15234954-G-A 13123040-G-A BY192604 Y+
17412397-A-G 15300517-A-G BY192680 YY+
2855720-G-A 2987679-G-A FGC21318 YY+
8094700-C-T 8226659-C-T BY192492 YY+
17574189-G-A 15462309-G-A BY192684 YY+
23852289-A-C 21690403-A-C BY192829 Y+
17738534-A-G 15626654-A-G BY192689 YY+
9481699-A-C 9644090-A-C BY192538 +
22231134-C-T 20069248-C-T DYZ19 *
22235458-A-G 20073572-A-G DYZ19 *
20822241-T-TCCA 18660355-T-TCCA P4_Gap *
22317456-T-A 20155570-T-A DYZ19 *
10653254-T-G **
9025415-A-G 9187806-A-G **
9414504-C-A 9576895-C-A **
9493500-C-A 9655891-C-A **
9457265-T-C 9619656-T-C **
10686375-T-A **
10744851-T-C **
24290790-T-C 22144643-T-C BY49374 P3_t1 **
10778806-GTCCAC-G **
10844280-T-AC **
10944789-C-G **
10927188-A-G **
10921644-T-C **
10892616-T-C **
10882591-C-A **
10866802-C-A **
10851909-ATTTTT-A **
10851899-A-G **
10848444-T-G **
10845233-C-A **
10844277-C-T **
10791236-C-T **
10841639-C-A **
10832183-T-C **
10832178-C-T **
10832173-C-T **
10818439-T-A **
10818423-A-C **
10815465-G-T **
10808265-A-T **
10792755-TTC-T **
10792754-A-ACC **
10817822-T-G **
7418477-A-C 7550436-A-C **
8379152-T-G 8511111-T-G **
2774898-G-C 2906857-G-C **
4242918-T-C 4374877-T-C **
4241961-T-C 4373920-T-C **
3897211-A-G 4029170-A-G **
3587316-A-T 3719275-A-T **
3395301-C-T 3527260-C-T **
3332054-G-T 3464013-G-T **
2833363-T-C 2965322-T-C **
2792872-C-A 2924831-C-A **
2718998-C-T 2850957-C-T **
4540312-C-A 4672271-C-A **
10689087-C-CCTTTT **
11026109-A-G **
18747153-T-C 16635273-T-C **
8751078-A-G 8883037-A-G A1078 BY32259 PLE20PLE20 **
10861887-CTCCAG-C **
17402530-C-A 15290650-C-A **
4957627-C-A 5089586-C-A **
16305758-T-C 14193878-T-C **
6765734-C-A 6897693-C-A **
4538446-G-A 4670405-G-A **
4796202-C-A 4928161-C-A **
8102626-A-G 8234585-A-G **
7201643-T-G 7333602-T-G **
8080351-T-G 8212310-T-G **
8030060-CT-C 8162019-CT-C **
7536037-C-T 7667996-C-T **
7536035-T-C 7667994-T-C **
7536021-C-A 7667980-C-A **
7535999-C-T 7667958-C-T **
7535979-C-G 7667938-C-G **
10949704-A-G **
7305675-A-G 7437634-A-G **
7154742-A-G 7286701-A-G **
4960435-AT-A 5092394-AT-A **
7086746-T-G 7218705-T-G **
6996790-T-C 7128749-T-C **
6977315-G-A 7109274-G-A **
6902938-T-A 7034897-T-A **
6528824-G-A 6660783-G-A **
6523892-G-A 6655851-G-A **
6356115-A-G 6488074-A-G **
5579817-C-T 5711776-C-T **
5107880-G-T 5239839-G-T **
10947308-C-T **
13217931-C-A 11062255-C-A **
10949864-T-A **
18747091-C-A 16635211-C-A **
20216428-T-G 18054542-T-G P5_Dst **
19926951-C-T 17815071-C-T P5_Prx **
19884273-A-T 17772393-A-T P5_Prx **
19339905-C-A 17228025-C-A **
19248613-C-A 17136733-C-A **
19030288-C-A 16918408-C-A **
18791311-A-G 16679431-A-G **
18747086-T-C 16635206-T-C **
21596495-C-A 19434609-C-A **
18738075-C-A 16626195-C-A **
18246411-GAAGA-G 16134531-GAAGA-G **
18190585-C-A 16078705-C-A **
18092936-G-A 15981056-G-A **
17930740-A-T 15818860-A-T **
17930739-T-A 15818859-T-A **
17923832-G-T 15811952-G-T **
17840422-G-A 15728542-G-A **
21473843-A-C 19311957-A-C **
22018009-T-A 19856123-T-A **
16492455-A-G 14380575-A-G **
25561022-G-A 23414875-G-A P1_gr1 **
56844799-C-A **
28818484-G-T 26672337-G-T **
28809386-G-A 26663239-G-A **
28798433-ATTT-A 26652286-ATTT-A **
28759632-C-A 26613485-C-A **
27915080-G-A 25768933-G-A P1_Y2 **
27886985-C-A 25740838-C-A P1_Y2 **
27633841-G-A 25487694-G-A P1_Y2 **
24579146-G-T 22432999-G-T P3_t2 **
22101025-A-C 19939139-A-C **
24016979-T-TG 21870832-T-TG **
21757858-T-A **
23848584-A-C 21686698-A-C **
23316004-A-G 21154118-A-G **
23091749-T-C 20929863-T-C **
23013751-T-C 20851865-T-C **
22775102-C-A 20613216-C-A **
22561307-C-A 20399421-C-A **
16526689-T-C 14414809-T-C **
16305740-A-G 14193860-A-G **
10951577-T-A **
11005206-C-T **
13292472-G-T 11136796-G-T **
13245789-G-T 11090113-G-T **
13243559-G-A 11087883-G-A **
13223517-G-T 11067841-G-T **
10976308-G-T **
11023133-T-G **
11023125-T-G **
11004459-C-CAAACA **
13442786-C-A 11287110-C-A **
11004447-T-TTGCAC **
10994420-T-TCCACA **
10994404-C-T **
10986353-T-C **
10986350-C-T **
10986344-C-T **
10972290-G-A **
10954275-C-A **
13295035-G-T 11139359-G-T **
13585507-G-A 11429831-G-A **
16305739-A-T 14193859-A-T **
15161061-AT-A 13049147-AT-A **
16052374-C-A 13940494-C-A **
16003091-A-G 13891211-A-G **
15963781-C-A 13851901-C-A **
15622361-T-C 13510481-T-C **
15477894-C-A 13366014-C-A **
15297992-C-T 13186091-C-T **
15221147-T-A 13109233-T-A **
15221145-A-G 13109231-A-G **
14844674-G-A 12732740-G-A **
13621001-C-A 11465325-C-A **
14694710-T-C 12582776-T-C **
14614622-C-A 12502820-C-A **
14179193-GAA-G 12058487-GAA-G 10×A**
14179075-C-A 12058369-C-A **
13890816-G-A 11770110-G-A **
11663479-A-G **
11650088-A-T **
13642405-TCAA-T 11486729-TCAA-T **
10776111-ATT-A **
10947332-C-A **
24518488-G-T 22372341-G-T **
10987946-A-C **
2745969-G-A 2877928-G-A **
10983356-C-A **
23831416-C-T 21669530-C-T **
16305841-C-T 14193961-C-T **
16305805-G-A 14193925-G-A **
10956134-C-A **
16305857-G-A 14193977-G-A **
17095520-C-A 14983640-C-A **
10987941-T-C **
10759817-T-C **
10987940-C-G **
10987936-T-C **
26124463-AG-A 23978316-AG-A P1_Y1 **
7280952-C-CTT 7412911-C-CTT 26×T**
16305786-G-A 14193906-G-A **
11023134-C-T **
15479965-A-T 13368085-A-T **
23773757-C-A 21611871-C-A **
11030280-C-G **
10988593-TTC-T **
11030271-G-A **
18891184-CTT-C 16779304-CTT-C 13×T**
17014660-C-A 14902780-C-A **
10921653-C-T **
10921633-C-T **
21862035-C-A 19700149-C-A **
15424792-G-T 13312912-G-T **
17188235-C-A 15076355-C-A **
10921628-A-T **
10792779-A-T **
2718988-C-G 2850947-C-G **
11030301-A-T **
10785205-C-T **
28624521-C-A 26478374-C-A **
11023139-C-T **
8816466-C-A 8948425-C-A **
19324119-C-CAA 17212239-C-CAA 10×A**
10657519-C-A **
10828695-C-CCGTTT **
18747139-G-A 16635259-G-A **
10989168-A-T **
10989158-ATTTCA-C **
13605789-A-AT 11450113-A-AT 10×T**
10992352-C-A **
10866067-C-T **
11017446-T-C **
10826504-C-G **
17929280-G-T 15817400-G-T **
8158998-C-A 8290957-C-A **
26124474-G-T 23978327-G-T P1_Y1 8×A**
28605987-C-A 26459840-C-A **
16827540-C-A 14715660-C-A **
10826531-C-A **
10826522-G-T **
10826511-C-G **
16445864-C-A 14333984-C-A **
10866097-C-CGT **
22489628-T-G 20327742-T-G DYZ19 **
17212371-C-A 15100491-C-A **
19198293-T-A 17086413-T-A Y103975 **
13223619-A-G 11067943-A-G **
24416983-G-GA 22270836-G-GA 9×A**
21737799-C-A 19575913-C-A **
8389619-C-G 8521578-C-G **
2865697-C-T 2997656-C-T Z35843 **
23315994-C-A 21154108-C-A **
22914674-CAAAA-C 20752788-CAAAA-C 27×A**
10866099-C-CAAT **
16305798-G-A 14193918-G-A **
10818472-C-T **
10792735-T-C **
10792730-T-C **
10796173-G-T **
11017409-C-A **
4388507-C-A 4520466-C-A **
10802640-C-A **
10959303-C-T **
10818484-A-G **
10818475-T-G **
10818465-C-T **
10660741-TTTCCA-T **
10818459-A-C **
10818451-T-G **
10818447-T-C **
10818424-CGTG-C **
10818416-CCA-T **
27887000-AC-A 25740853-AC-A P1_Y2 **
18747102-C-T 16635222-C-T **
10824151-C-CTA **
16305794-G-A 14193914-G-A **
16465797-C-A 14353917-C-A **
56847683-A-G **
15864102-C-A 13752222-C-A **
10689084-A-T **
14376702-C-A 12255998-C-A **
10823927-C-A **
10808262-A-C **
10965518-T-A **
10782127-C-A **
13708981-A-G 11553305-A-G **
10930915-C-A **
10987188-A-T **
21603934-C-A 19442048-C-A **
2719031-C-T 2850990-C-T **
20334921-G-T 18173035-G-T P5_Dst **
7223426-C-A 7355385-C-A **
11675646-C-A **
19072016-G-A 16960136-G-A **
19324210-C-A 17212330-C-A **
7241014-C-A 7372973-C-A **
10987033-C-A **
10679414-C-A **
18154541-C-A 16042661-C-A **
23697861-G-T 21535975-G-T **
14236026-C-CAA 12115320-C-CAA 16×A**
10992377-C-A **
10796174-T-C **
14295145-C-A 12174439-C-A **
24381391-C-CA 22235244-C-CA 11×A**
10921638-C-T **
13895851-C-A 11775145-C-A **
28818453-A-G 26672306-A-G **
7535974-C-T 7667933-C-T **
3332289-C-A 3464248-C-A **
11004973-C-A **
23204965-C-T 21043079-C-T **
4136908-C-A 4268867-C-A **
17188368-C-A 15076488-C-A **
2719038-C-T 2850997-C-T **
11023154-C-T **
18195882-C-A 16084002-C-A **
21182435-C-A 19020549-C-A **
23831415-C-A 21669529-C-A **
2719051-ATT-A 2851010-ATT-A **
11009561-C-A **
14537743-C-A 12425944-C-A **
10796142-C-A **
18856014-C-A 16744134-C-A **
18747135-G-A 16635255-G-A **
10792738-C-A **
5215605-C-A 5347564-C-A **
16305855-G-A 14193975-G-A **
10975758-T-C **
13962280-C-A 11841574-C-A **
10796166-C-G **
15143611-C-A 13031698-C-A **
10921670-C-A **
10896318-C-T **
10776116-ATTCCATTC-A **
10851924-C-A **
11023119-T-C **
56734790-A-C **
10866532-C-G FGC81433 **
23802262-C-A 21640376-C-A **
8379250-C-A 8511209-C-A **
23831403-G-A 21669517-G-A **
19107062-C-A 16995182-C-A **
22366337-G-A 20204451-G-A DYZ19 **
14366296-C-A 12245591-C-A **
5935477-C-A 6067436-C-A **
10779348-C-A **
7142150-C-A 7274109-C-A **
11018239-A-T **
3274275-C-A 3406234-C-A **
16305815-C-T 14193935-C-T **
28798426-T-G 26652279-T-G **
2708363-C-A 2840322-C-A **
10958526-C-A **
10958507-T-A **
10796137-C-T **
6996785-C-T 7128744-C-T Z32438 **
9624605-G-T 9786996-G-T IR3_Prx **
13850265-AGGAATGGAATGGAAT-A 11729559-AGGAATGGAATGGAAT-A 15×GGAAT***
17106925-TAC-T 14995045-TAC-T ***
22516484-AT-A 20354598-AT-A ***
10026577-C-A 10188968-C-A ***
9968339-GTT-G,GTTT 10130730-GTT-G,GTTT 15×T***
23055122-C-A 20893236-C-A ***
23435181-GT-G,GTTT 21273295-GT-G,GTTT 20×T***
7126524-CTTTTTTT-C 7258483-CTTTTTTT-C 23×T***
13453250-A-C 11297574-A-C ***
24430022-T-C 22283875-T-C ***
13453254-C-CACTGA 11297578-C-CACTGA ***
8169115-C-A 8301074-C-A ***
23419531-C-A 21257645-C-A ***
7974366-T-C 8106325-T-C ***
21827749-A-G 19665863-A-G ***
3696806-G-T 3828765-G-T ***
16029792-C-A 13917912-C-A ***
15976707-T-C 13864827-T-C ***
15976699-A-G 13864819-A-G ***
15498231-C-A 13386351-C-A ***
14395464-C-A 12274760-C-A ***
18593205-C-CT 16481325-C-CT 10×T***
14774275-TTTTTTTG-T 12662344-TTTTTTTG-T ***
18589701-T-TA 16477821-T-TA ***
13828477-G-T 11707771-G-T ***
15174707-C-A 13062793-C-A ***
10678062-G-GATTCC ***
13489502-C-A 11333826-C-A ***
13488884-C-A 11333208-C-A ***
21182503-T-C 19020617-T-C ***
13453170-A-ACTG 11297494-A-ACTG ***
16915178-T-C 14803298-T-C ***
13254002-GTTT-G,GTT 11098326-GTTT-G,GTT 17×T***
15057126-CT-C 12945218-CT-C 9×T***
21558715-T-C 19396829-T-C ***
7984040-T-TAA 8115999-T-TAA 21×A***
10661184-TTCCACTCCAT-T,TTCCACCC ***
6541102-A-AC 6673061-A-AC ***
6695078-C-A 6827037-C-A ***
6778851-C-A 6910810-C-A ***
14053694-C-A 11932988-C-A ***
17082977-CCTTTCTTT-C,CCTTTCTTTCTTT 14971097-CCTTTCTTT-C,CCTTTCTTTCTTT 15×CTTT***
10992319-C-T ***
10992339-C-CTT ***
6792628-CAAAAA-C,CAAAA 6924587-CAAAAA-C,CAAAA 18×A***
13453225-AAT-A,ATT 11297549-AAT-A,ATT ***
17353098-A-G 15241218-A-G ***
17126159-C-A 15014279-C-A ***
23827530-TA-T 21665644-TA-T 9×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 320307956658678296617739461
Used in age calculations956658678296617739461
Counts of SNPs2120
Variant counts last updated 2019-07-19 22:49:03.



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