unknown
BigY2: 548140Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 548140 |
---|---|---|---|---|---|---|---|---|
9583613-A-C | 9746004-A-C | IR3_Prx | A+ | |||||
13687757-T-TAATGG | 11532081-T-TAATGG | A* | ||||||
26160877-C-T | 24014730-C-T | P1_Y1 | A* | |||||
18313139-T-C | 16201259-T-C | P6_Prx | A* | |||||
6286756-T-G | 6418715-T-G | IR3_Dst | A* | |||||
26162139-G-T | 24015992-G-T | P1_Y1 | A* | |||||
20792730-G-T | 18630844-G-T | P4_Prx | A* | |||||
22310888-C-A | 20149002-C-A | DYZ19 | A* | |||||
8896557-A-G | 9028516-A-G | BY76751 | Y | + | ||||
17443912-G-T | 15332032-G-T | BY114845 | Y | Y | + | |||
22263507-A-G | 20101621-A-G | BY196123 | DYZ19 | + | ||||
22087532-G-A | 19925646-G-A | BY25386 | Y | Y | + | |||
8395373-T-A | 8527332-T-A | BY72291 | Y | Y | + | |||
22228455-C-A | 20066569-C-A | BY196113 | DYZ19 | + | ||||
22025373-G-T | 19863487-G-T | BY196058 | Y | Y | + | |||
18667477-T-C | 16555597-T-C | BY195438 | Y | Y | + | |||
6655332-A-G | 6787291-A-G | BY193087 | Y | Y | + | |||
8800309-TA-T | 8932268-TA-T | 9×A | + | |||||
9813750-C-G | 9976141-C-G | FGC43037 BY14532 | Y | Y | + | |||
16565964-C-T | 14454084-C-T | BY154152 | Y | Y | + | |||
8687282-A-G | 8819241-A-G | BY75206 | Y | Y | + | |||
7952003-G-A | 8083962-G-A | BY69018 | Y | Y | + | |||
23774483-G-A | 21612597-G-A | BY196603 | Y | + | ||||
9985665-AAC-A | 10148056-AAC-A | + | ||||||
14805176-C-T | 12693247-C-T | BY194308 | Y | Y | + | |||
21426374-T-C | 19264488-T-C | BY132833 | Y | Y | + | |||
18051845-G-T | 15939965-G-T | BY119499 | Y | Y | + | |||
14975035-T-C | 12863110-T-C | BY194356 | Y | Y | + | |||
17654275-G-A | 15542395-G-A | BY195140 | Y | Y | + | |||
17606765-A-G | 15494885-A-G | BY116109 | Y | Y | + | |||
20816112-T-G | 18654226-T-G | FT283754 | P4_Gap | + | ||||
8644401-C-T | 8776360-C-T | Y | Y | + | ||||
8249691-G-GC | 8381650-G-GC | * | ||||||
9700317-G-GAAC | 9862708-G-GAAC | IR3_Prx | 7×AAC | * | ||||
8342944-C-A | 8474903-C-A | ** | ||||||
7868744-G-T | 8000703-G-T | ** | ||||||
7371699-T-A | 7503658-T-A | ** | ||||||
7418334-C-A | 7550293-C-A | ** | ||||||
10034015-C-T | 10196406-C-T | ** | ||||||
7515275-T-A | 7647234-T-A | FT375432 | ** | |||||
7717750-T-G | 7849709-T-G | ** | ||||||
8156761-GT-G | 8288720-GT-G | ** | ||||||
9152076-A-C | 9314467-A-C | ** | ||||||
8158996-C-T | 8290955-C-T | ** | ||||||
9557561-T-G | 9719952-T-G | IR3_Prx | ** | |||||
8167241-T-A | 8299200-T-A | ** | ||||||
9344453-A-C | 9506844-A-C | ** | ||||||
10036089-G-A | 10198480-G-A | ** | ||||||
9344447-A-C | 9506838-A-C | ** | ||||||
27842234-A-AGAAG | 25696087-A-AGAAG | P1_Y2 | 8×GAAG | ** | ||||
10655761-C-T | ** | |||||||
10625033-C-A | ** | |||||||
10781076-C-A | ** | |||||||
10845510-A-C | ** | |||||||
10837096-C-A | ** | |||||||
10835481-T-C | ** | |||||||
10827050-A-C | ** | |||||||
10826186-A-T | ** | |||||||
10820514-C-T | FT432637 | ** | ||||||
10820511-T-C | ** | |||||||
10820500-T-A | ** | |||||||
10820476-C-T | ** | |||||||
10818838-T-G | ** | |||||||
10817569-C-A | ** | |||||||
10796673-A-ATATTTCT | ** | |||||||
10787282-T-G | ** | |||||||
10773456-A-C | ** | |||||||
10625571-G-C | ** | |||||||
10770012-A-T | ** | |||||||
10770011-C-T | FGC79643 | ** | ||||||
10769393-TC-T | ** | |||||||
10769391-A-AC | ** | |||||||
10769370-G-A | BY33285 | FT219291 | ** | |||||
10761415-T-G | ** | |||||||
10760273-T-A | ** | |||||||
10760259-C-T | ** | |||||||
10689110-C-G | ** | |||||||
10689085-T-TTCTAC | ** | |||||||
10687232-C-A | ** | |||||||
10667701-C-T | ** | |||||||
10625577-T-A | ** | |||||||
10625576-T-C | ** | |||||||
7142463-G-A | 7274422-G-A | ** | ||||||
6882711-T-C | 7014670-T-C | ** | ||||||
7115554-A-C | 7247513-A-C | ** | ||||||
15308413-C-A | 13196515-C-A | ** | ||||||
18923335-T-G | 16811455-T-G | ** | ||||||
14475889-G-T | 12355158-G-T | ** | ||||||
9177529-C-A | 9339920-C-A | ** | ||||||
7011543-T-C | 7143502-T-C | ** | ||||||
17475166-G-C | 15363286-G-C | ** | ||||||
8734916-C-A | 8866875-C-A | ** | ||||||
21604162-C-A | 19442276-C-A | ** | ||||||
18959146-C-T | 16847266-C-T | ** | ||||||
8452228-C-CAAA | 8584187-C-CAAA | 11×A | ** | |||||
10826186-AACTCC-A | ** | |||||||
18959095-A-G | 16847215-A-G | ** | ||||||
18959078-A-G | 16847198-A-G | ** | ||||||
5887670-T-C | 6019629-T-C | ** | ||||||
15238984-C-A | 13127070-C-A | ** | ||||||
28627254-T-C | 26481107-T-C | ** | ||||||
7821364-C-A | 7953323-C-A | ** | ||||||
11028278-C-A | ** | |||||||
10760279-A-C | ** | |||||||
10969720-C-A | ** | |||||||
10827068-C-T | ** | |||||||
10827038-C-G | ** | |||||||
10827023-C-T | ** | |||||||
56845132-C-T | ** | |||||||
28796999-A-T | 26650852-A-T | ** | ||||||
19346492-T-G | 17234612-T-G | ** | ||||||
56842224-T-A | ** | |||||||
22564554-C-A | 20402668-C-A | ** | ||||||
18959169-C-T | 16847289-C-T | ** | ||||||
7115533-C-T | 7247492-C-T | ** | ||||||
6074177-C-A | 6206136-C-A | ** | ||||||
7039998-C-A | 7171957-C-A | ** | ||||||
7016652-G-T | 7148611-G-T | ** | ||||||
7016543-T-G | 7148502-T-G | ** | ||||||
7016530-C-A | 7148489-C-A | ** | ||||||
6981420-G-A | 7113379-G-A | ** | ||||||
10890243-C-T | ** | |||||||
6814569-G-T | 6946528-G-T | ** | ||||||
6490657-C-A | 6622616-C-A | ** | ||||||
6352002-C-A | 6483961-C-A | ** | ||||||
6267216-C-A | 6399175-C-A | IR3_Dst | ** | |||||
6106109-T-G | 6238068-T-G | ** | ||||||
6102512-T-G | 6234471-T-G | ** | ||||||
5645497-G-T | 5777456-G-T | ** | ||||||
2759919-G-A | 2891878-G-A | ** | ||||||
5549181-G-T | 5681140-G-T | ** | ||||||
5195287-G-T | 5327246-G-T | ** | ||||||
5191229-T-TG | 5323188-T-TG | ** | ||||||
5046608-A-G | 5178567-A-G | ** | ||||||
4880134-G-T | 5012093-G-T | ** | ||||||
4063990-C-A | 4195949-C-A | ** | ||||||
3824903-A-T | 3956862-A-T | ** | ||||||
3435951-A-C | 3567910-A-C | ** | ||||||
3165056-C-A | 3297015-C-A | ** | ||||||
3131313-A-T | 3263272-A-T | ** | ||||||
2825445-T-C | 2957404-T-C | ** | ||||||
2760040-T-G | 2891999-T-G | ** | ||||||
2759937-G-C | 2891896-G-C | ** | ||||||
10851845-T-G | ** | |||||||
13205605-T-A | 11049929-T-A | ** | ||||||
10922471-T-G | ** | |||||||
19183908-A-G | 17072028-A-G | ** | ||||||
21438470-G-A | 19276584-G-A | FGC56594 | ** | |||||
21133293-C-A | 18971407-C-A | ** | ||||||
21082287-G-A | 18920401-G-A | ** | ||||||
20700736-T-C | 18538850-T-C | P4_Prx | ** | |||||
20620964-A-C | 18459078-A-C | P4_Prx | ** | |||||
19530283-C-G | 17418403-C-G | ** | ||||||
19528338-C-A | 17416458-C-A | ** | ||||||
19479064-C-A | 17367184-C-A | ** | ||||||
19423218-T-G | 17311338-T-G | ** | ||||||
19301200-T-C | 17189320-T-C | ** | ||||||
19300751-C-A | 17188871-C-A | ** | ||||||
19200990-C-A | 17089110-C-A | ** | ||||||
19107361-C-T | 16995481-C-T | ** | ||||||
21561597-C-A | 19399711-C-A | ** | ||||||
18959156-A-G | 16847276-A-G | ** | ||||||
18959122-G-A | 16847242-G-A | ** | ||||||
18959107-T-A | 16847227-T-A | ** | ||||||
18959066-A-AT | 16847186-A-AT | ** | ||||||
18930750-C-T | 16818870-C-T | ** | ||||||
18874185-G-T | 16762305-G-T | ** | ||||||
18764595-A-C | 16652715-A-C | ** | ||||||
18756307-C-G | 16644427-C-G | ** | ||||||
18752889-G-T | 16641009-G-T | ** | ||||||
18650475-T-C | 16538595-T-C | ** | ||||||
18646038-T-C | 16534158-T-C | ** | ||||||
18567812-A-G | 16455932-A-G | ** | ||||||
18401059-T-C | 16289179-T-C | P6_Gap | ** | |||||
21554535-T-A | 19392649-T-A | ** | ||||||
21605182-A-C | 19443296-A-C | ** | ||||||
18098933-G-A | 15987053-G-A | ** | ||||||
23048812-G-T | 20886926-G-T | ** | ||||||
56846177-T-G | ** | |||||||
28627259-C-A | 26481112-C-A | ** | ||||||
28627257-G-A | 26481110-G-A | ** | ||||||
27620722-TAC-T | 25474575-TAC-T | P1_Y2 | ** | |||||
27620703-A-T | 25474556-A-T | P1_Y2 | ** | |||||
26500330-C-T | 24354183-C-T | P1_Y1 | ** | |||||
24502327-A-G | 22356180-A-G | FTA6325 | ** | |||||
24432784-G-A | 22286637-G-A | ** | ||||||
24369578-CA-C | 22223431-CA-C | ** | ||||||
23777621-A-G | 21615735-A-G | ** | ||||||
23435191-T-TC | 21273305-T-TC | ** | ||||||
23350606-C-A | 21188720-C-A | ** | ||||||
23262788-G-C | 21100902-G-C | ** | ||||||
23013443-T-G | 20851557-T-G | ** | ||||||
21961533-T-A | 19799647-T-A | ** | ||||||
22963319-T-C | 20801433-T-C | FT344313 | ** | |||||
22882025-C-A | 20720139-C-A | ** | ||||||
22664944-G-A | 20503058-G-A | ** | ||||||
22654955-G-C | 20493069-G-C | ** | ||||||
22601721-C-A | 20439835-C-A | ** | ||||||
22440954-C-G | 20279068-C-G | DYZ19 | ** | |||||
22258164-T-G | 20096278-T-G | DYZ19 | ** | |||||
22228448-A-T | 20066562-A-T | BY196785 | DYZ19 | ** | ||||
22228446-A-G | 20066560-A-G | BY196784 | DYZ19 | ** | ||||
22228440-T-G | 20066554-T-G | BY196783 | DYZ19 | ** | ||||
22203817-C-A | 20041931-C-A | ** | ||||||
22101996-G-A | 19940110-G-A | ** | ||||||
22081020-T-G | 19919134-T-G | ** | ||||||
18158729-ATGGAAC-A | 16046849-ATGGAAC-A | ** | ||||||
17703347-C-A | 15591467-C-A | ** | ||||||
10946950-C-A | ** | |||||||
13632653-A-T | 11476977-A-T | BY86796 | ** | |||||
14766689-T-C | 12654758-T-C | ** | ||||||
14766662-G-T | 12654731-G-T | ** | ||||||
14627255-G-A | 12515323-G-A | ** | ||||||
14473758-G-T | 12353027-G-T | ** | ||||||
14329581-A-T | 12208875-A-T | ** | ||||||
14285892-G-C | 12165186-G-C | FT343075 | ** | |||||
14220398-T-C | 12099692-T-C | ** | ||||||
14073669-A-T | 11952963-A-T | ** | ||||||
13907722-C-A | 11787016-C-A | ** | ||||||
13859425-G-C | 11738719-G-C | ** | ||||||
13859406-A-AGG | 11738700-A-AGG | ** | ||||||
13859282-A-C | 11738576-A-C | ** | ||||||
13593659-C-A | 11437983-C-A | ** | ||||||
14766693-G-C | 12654762-G-C | ** | ||||||
13457764-T-C | 11302088-T-C | ** | ||||||
13446535-C-G | 11290859-C-G | ** | ||||||
13262758-C-A | 11107082-C-A | ** | ||||||
13226590-G-A | 11070914-G-A | ** | ||||||
9843229-C-A | 10005620-C-A | ** | ||||||
11031785-G-A | ** | |||||||
11027060-ATTCCTC-A | ** | |||||||
11026597-C-A | ** | |||||||
11022939-CTCCAT-C | ** | |||||||
10990001-C-A | ** | |||||||
10957940-A-T | ** | |||||||
10947445-T-C | ** | |||||||
10947411-T-C | ** | |||||||
14766691-C-T | 12654760-C-T | ** | ||||||
14766694-G-A | 12654763-G-A | ** | ||||||
17591844-C-G | 15479964-C-G | ** | ||||||
15862460-C-A | 13750580-C-A | ** | ||||||
17552285-C-A | 15440405-C-A | ** | ||||||
17549091-A-C | 15437211-A-C | ** | ||||||
17333989-T-C | 15222109-T-C | ** | ||||||
17333969-G-A | 15222089-G-A | ** | ||||||
17297449-G-A | 15185569-G-A | ** | ||||||
17032484-T-G | 14920604-T-G | ** | ||||||
16988399-C-A | 14876519-C-A | ** | ||||||
16919973-C-A | 14808093-C-A | ** | ||||||
16766261-C-A | 14654381-C-A | ** | ||||||
16094811-A-G | 13982931-A-G | ** | ||||||
16040943-G-A | 13929063-G-A | ** | ||||||
16019214-A-T | 13907334-A-T | FT343366 | ** | |||||
15995566-C-A | 13883686-C-A | ** | ||||||
15611964-C-A | 13500084-C-A | ** | ||||||
14807287-T-C | 12695358-T-C | ** | ||||||
15585172-AG-A | 13473292-AG-A | ** | ||||||
15559169-C-A | 13447289-C-A | ** | ||||||
15546029-A-G | 13434149-A-G | ** | ||||||
15489391-G-A | 13377511-G-A | ** | ||||||
15489390-T-C | 13377510-T-C | ** | ||||||
15320743-T-C | 13208861-T-C | ** | ||||||
15300416-C-A | 13188515-C-A | ** | ||||||
15193686-C-A | 13081772-C-A | ** | ||||||
15181773-C-A | 13069859-C-A | ** | ||||||
14977293-T-G | 12865368-T-G | ** | ||||||
14934287-T-C | 12822352-T-C | FT343192 | ** | |||||
14898844-A-T | 12786911-A-T | ** | ||||||
14826019-T-C | 12714086-T-C | ** | ||||||
10820535-T-A | ** | |||||||
56827990-AG-A | ** | |||||||
3274847-G-T | 3406806-G-T | ** | ||||||
15468286-T-C | 13356406-T-C | ** | ||||||
10778729-C-A | ** | |||||||
10778714-C-A | ** | |||||||
10778703-C-G | ** | |||||||
9843200-C-CA | 10005591-C-CA | ** | ||||||
10827044-T-C | ** | |||||||
13433339-A-C | 11277663-A-C | ** | ||||||
13433326-A-G | 11277650-A-G | ** | ||||||
10764596-A-T | ** | |||||||
6934863-C-A | 7066822-C-A | BZ577 | ** | |||||
10796670-TCC-T | ** | |||||||
19670774-CT-C | 17558894-CT-C | P5_Prx | ** | |||||
10825280-C-CGAATTA | ** | |||||||
14312287-C-A | 12191581-C-A | ** | ||||||
56842248-G-A | ** | |||||||
14766663-T-C | 12654732-T-C | ** | ||||||
21438465-C-A | 19276579-C-A | ** | ||||||
15412771-C-CTT | 13300891-C-CTT | 15×T | ** | |||||
10667716-C-A | ** | |||||||
17277286-C-A | 15165406-C-A | ** | ||||||
10825290-C-A | ** | |||||||
10764589-C-G | ** | |||||||
10677880-C-A | ** | |||||||
7197264-C-T | 7329223-C-T | ** | ||||||
11023067-A-C | FT393999 | ** | ||||||
24575878-T-TC | 22429731-T-TC | P3_t2 | ** | |||||
3620734-C-A | 3752693-C-A | ** | ||||||
15412385-C-A | 13300505-C-A | ** | ||||||
10760284-G-C | ** | |||||||
10824677-C-A | ** | |||||||
10772253-C-A | ** | |||||||
14766664-G-A | 12654733-G-A | ** | ||||||
8281779-CAAA-C | 8413738-CAAA-C | 15×A | ** | |||||
2759939-A-G | 2891898-A-G | ** | ||||||
10772250-T-C | ** | |||||||
15468554-G-A | 13356674-G-A | ** | ||||||
10653130-T-C | ** | |||||||
11035327-A-C | ** | |||||||
10826867-TCCACA-T | ** | |||||||
11035364-T-C | ** | |||||||
11030691-C-T | ** | |||||||
11030682-C-A | ** | |||||||
11030673-A-T | ** | |||||||
10796690-T-C | ** | |||||||
14521736-C-A | 12409937-C-A | ** | ||||||
15435328-C-A | 13323448-C-A | ** | ||||||
10924439-T-C | ** | |||||||
16750115-T-C | 14638235-T-C | ** | ||||||
8078522-G-T | 8210481-G-T | ** | ||||||
15181626-A-G | 13069712-A-G | ** | ||||||
22757750-C-A | 20595864-C-A | ** | ||||||
10673880-C-A | ** | |||||||
21589616-C-A | 19427730-C-A | ** | ||||||
6244486-CA-C | 6376445-CA-C | IR3_Dst | ** | |||||
22916846-C-A | 20754960-C-A | ** | ||||||
10673898-C-G | ** | |||||||
14992765-T-CC | 12880850-T-CC | ** | ||||||
10754744-G-GCTTTC | ** | |||||||
24751517-G-T | 22605370-G-T | P3_b2 | ** | |||||
10959483-C-A | ** | |||||||
18194600-C-A | 16082720-C-A | ** | ||||||
5022164-C-A | 5154123-C-A | ** | ||||||
10760290-CGAATG-C | ** | |||||||
21781256-AGC-A | ** | |||||||
10959528-C-A | ** | |||||||
6818834-C-A | 6950793-C-A | ** | ||||||
2979327-C-A | 3111286-C-A | ** | ||||||
6981416-T-G | 7113375-T-G | ** | ||||||
11013880-C-A | ** | |||||||
11013878-A-G | ** | |||||||
11013870-C-T | ** | |||||||
10895855-C-A | ** | |||||||
10895853-T-C | ** | |||||||
10959521-G-T | ** | |||||||
10788812-G-C | ** | |||||||
11023069-C-T | ** | |||||||
13457699-T-G | 11302023-T-G | ** | ||||||
14825810-A-T | 12713877-A-T | ** | ||||||
28627237-T-C | 26481090-T-C | ** | ||||||
58988397-A-G | 56842250-A-G | ** | ||||||
24381445-C-A | 22235298-C-A | Y31319 | ** | |||||
11001591-CTCCAA-C | ** | |||||||
22440989-A-C | 20279103-A-C | DYZ19 | ** | |||||
18959170-C-G | 16847290-C-G | ** | ||||||
18723950-G-A | 16612070-G-A | BY123436 | ** | |||||
28777725-G-T | 26631578-G-T | Y20661 | ** | |||||
19389730-A-G | 17277850-A-G | Y43005 | ** | |||||
6916918-C-A | 7048877-C-A | ** | ||||||
23476223-C-G | 21314337-C-G | ** | ||||||
27733713-CA-C | 25587566-CA-C | P1_Y2 | 26×A | ** | ||||
23001065-A-T | 20839179-A-T | BY142257 | 10×T | ** | ||||
13236471-CAT-C | 11080795-CAT-C | ** | ||||||
13461009-C-A | 11305333-C-A | ** | ||||||
2967118-AGGT-A | 3099077-AGGT-A | ** | ||||||
19469845-TTCTC-T | 17357965-TTCTC-T | 14×TC | ** | |||||
23801787-C-A | 21639901-C-A | ** | ||||||
14847004-C-CAA | 12735070-C-CAA | 20×A | ** | |||||
3389131-T-C | 3521090-T-C | ** | ||||||
13722328-G-T | 11566652-G-T | ** | ||||||
11038087-T-C | ** | |||||||
13722327-T-A | 11566651-T-A | ** | ||||||
5761291-TA-T | 5893250-TA-T | 8×A | ** | |||||
10004479-C-A | 10166870-C-A | ** | ||||||
10985256-C-T | FT439242 | ** | ||||||
10971524-C-A | ** | |||||||
22974166-C-A | 20812280-C-A | ** | ||||||
10990145-C-T | ** | |||||||
17004767-C-A | 14892887-C-A | ** | ||||||
10684218-C-T | ** | |||||||
17480238-C-A | 15368358-C-A | ** | ||||||
11005577-A-T | ** | |||||||
11038134-C-CT | ** | |||||||
11038125-A-C | ** | |||||||
11038116-A-T | ** | |||||||
6106080-A-C | 6238039-A-C | ** | ||||||
3389133-T-C | 3521092-T-C | ** | ||||||
11001564-C-CTATAT | ** | |||||||
10771907-A-T | ** | |||||||
10826823-C-T | ** | |||||||
10667739-A-T | ** | |||||||
21732699-G-T | 19570813-G-T | ** | ||||||
24303-A-G | ** | |||||||
28485799-C-A | 26339652-C-A | ** | ||||||
19183915-C-G | 17072035-C-G | ** | ||||||
2768037-G-T | 2899996-G-T | ** | ||||||
18707070-C-A | 16595190-C-A | ** | ||||||
23734321-C-A | 21572435-C-A | ** | ||||||
6943972-CTTTTT-C | 7075931-CTTTTT-C | 15×T | ** | |||||
8661613-C-A | 8793572-C-A | ** | ||||||
3389149-G-A | 3521108-G-A | ** | ||||||
9577017-CAAAA-C | 9739408-CAAAA-C | IR3_Prx | 15×A | ** | ||||
33961-A-C | ** | |||||||
11005527-C-A | ** | |||||||
22916797-A-C | 20754911-A-C | ** | ||||||
10959500-A-G | ** | |||||||
10959484-C-T | ** | |||||||
10959476-T-G | ** | |||||||
11025739-T-G | ** | |||||||
18274893-TG-T | 16163013-TG-T | P6_Prx | ** | |||||
13856260-A-C | 11735554-A-C | ** | ||||||
18086109-G-T | 15974229-G-T | ** | ||||||
2810366-ATTTTTT-A | 2942325-ATTTTTT-A | 23×T | ** | |||||
22520820-A-C | 20358934-A-C | ** | ||||||
10958389-C-CTTTAA | ** | |||||||
21394088-C-A | 19232202-C-A | ** | ||||||
10964881-C-A | ** | |||||||
19004736-C-A | 16892856-C-A | ** | ||||||
10936771-C-A | ** | |||||||
10959553-C-T | ** | |||||||
11005531-C-G | ** | |||||||
10936751-G-A | ** | |||||||
17239245-G-T | 15127365-G-T | ** | ||||||
14807289-T-C | 12695360-T-C | ** | ||||||
13461036-T-A | 11305360-T-A | ** | ||||||
11035353-A-T | ** | |||||||
11030644-A-C | ** | |||||||
14807298-CA-C | 12695369-CA-C | ** | ||||||
14992748-A-G | 12880833-A-G | ** | ||||||
17203323-T-G | 15091443-T-G | ** | ||||||
7115538-A-G | 7247497-A-G | FT333705 | ** | |||||
16271226-C-A | 14159346-C-A | ** | ||||||
56844584-G-T | ** | |||||||
10959533-C-A | ** | |||||||
17864107-C-A | 15752227-C-A | ** | ||||||
10987745-A-T | ** | |||||||
13433333-G-A | 11277657-G-A | ** | ||||||
6398593-C-A | 6530552-C-A | ** | ||||||
14552150-G-T | 12440351-G-T | 11×A | ** | |||||
18197923-C-A | 16086043-C-A | ** | ||||||
10796691-C-A | ** | |||||||
56842401-C-A | ** | |||||||
10767918-T-G | ** | |||||||
17190555-C-A | 15078675-C-A | ** | ||||||
2759942-C-T | 2891901-C-T | ** | ||||||
25898600-C-A | 23752453-C-A | P1_Y1 | ** | |||||
10902286-C-A | ** | |||||||
6981406-G-A | 7113365-G-A | ** | ||||||
28627271-C-T | 26481124-C-T | ** | ||||||
11035322-C-T | ** | |||||||
19161079-G-A | 17049199-G-A | FGC56767 | ** | |||||
10973662-C-T | ** | |||||||
8409295-T-G | 8541254-T-G | ** | ||||||
10902288-C-A | ** | |||||||
8350158-C-A | 8482117-C-A | ** | ||||||
2884812-C-A | 3016771-C-A | ** | ||||||
21929580-ATGTG-A | 19767694-ATGTG-A | 10×TG | ** | |||||
11022959-C-A | ** | |||||||
24611442-G-T | 22465295-G-T | P3_t2 | ** | |||||
56839171-G-T | ** | |||||||
56857517-G-T | ** | |||||||
11021326-T-A | ** | |||||||
18147588-C-T | 16035708-C-T | ** | ||||||
11035359-C-A | ** | |||||||
10802121-C-A | ** | |||||||
6829363-C-A | 6961322-C-A | ** | ||||||
10936769-C-T | FT437272 | ** | ||||||
23832895-C-A | 21671009-C-A | ** | ||||||
11005536-C-G | ** | |||||||
56833183-T-G | ** | |||||||
10990112-A-G | ** | |||||||
18779397-C-A | 16667517-C-A | ** | ||||||
10925676-T-G | ** | |||||||
10990130-A-T | ** | |||||||
17333975-T-C | 15222095-T-C | ** | ||||||
10990135-C-G | ** | |||||||
17333967-T-C | 15222087-T-C | ** | ||||||
11005561-C-CCACCA | ** | |||||||
14017631-C-A | 11896925-C-A | ** | ||||||
15239058-C-A | 13127144-C-A | ** | ||||||
10990137-A-T | ** | |||||||
10990138-T-C | ** | |||||||
10959546-C-T | ** | |||||||
7162490-C-A | 7294449-C-A | ** | ||||||
10647941-C-A | ** | |||||||
10925708-A-G | ** | |||||||
10959529-G-C | ** | |||||||
10925699-C-CATTCA | ** | |||||||
10924394-T-A | ** | |||||||
10924438-A-T | ** | |||||||
56833191-C-A | ** | |||||||
10673835-CTCCACTCCACACCAT-C | ** | |||||||
10924444-A-C | ** | |||||||
18959099-T-C | 16847219-T-C | ** | ||||||
10959486-C-T | ** | |||||||
13226613-C-A | 11070937-C-A | ** | ||||||
8253608-C-A | 8385567-C-A | Y86273 | ** | |||||
56842414-G-C | ** | |||||||
16581226-C-A | 14469346-C-A | ** | ||||||
10778746-G-T | ** | |||||||
13859394-G-T | 11738688-G-T | ** | ||||||
18717819-C-A | 16605939-C-A | ** | ||||||
16568167-C-A | 14456287-C-A | ** | ||||||
10778751-C-A | ** | |||||||
23262750-A-G | 21100864-A-G | ** | ||||||
7313432-TA-T | 7445391-TA-T | 8×A | ** | |||||
18480342-G-T | 16368462-G-T | P6_Dst | ** | |||||
10661580-A-T | ** | |||||||
10796677-C-A | ** | |||||||
14785016-C-A | 12673086-C-A | ** | ||||||
10778774-C-T | ** | |||||||
2827909-CTTT-C | 2959868-CTTT-C | 17×T | *** | |||||
13453463-C-A | 11297787-C-A | *** | ||||||
24450760-C-A | 22304613-C-A | *** | ||||||
22287414-G-C | 20125528-G-C | DYZ19 | *** | |||||
15089989-T-C | 12978078-T-C | PF3722 CTS3641 | *** | |||||
21858318-C-A | 19696432-C-A | *** | ||||||
56844246-C-A | *** | |||||||
56842451-T-C | *** | |||||||
16925902-C-A | 14814022-C-A | *** | ||||||
13255674-C-T | 11099998-C-T | *** | ||||||
23378770-C-A | 21216884-C-A | *** | ||||||
22178488-CTT-C | 20016602-CTT-C | 15×T | *** | |||||
22721771-C-A | 20559885-C-A | *** | ||||||
22792923-C-A | 20631037-C-A | *** | ||||||
18234552-GA-G | 16122672-GA-G | FGC42097 | 10×A | *** | ||||
13869149-AGAATG-A | 11748443-AGAATG-A | 12×GAATG | *** | |||||
13909599-CAA-C,CA | 11788893-CAA-C,CA | 14×A | *** | |||||
14530900-GTA-G | 12419101-GTA-G | *** | ||||||
23024799-C-A | 20862913-C-A | *** | ||||||
22552346-C-A | 20390460-C-A | *** | ||||||
8835114-C-A | 8967073-C-A | *** | ||||||
21923294-C-A | 19761408-C-A | *** | ||||||
24666389-C-A | 22520242-C-A | P3_b2 | *** | |||||
16229849-C-A | 14117969-C-A | *** | ||||||
11659817-G-T | *** | |||||||
15208059-C-A | 13096145-C-A | *** | ||||||
21287967-C-A | 19126081-C-A | 16×T | *** | |||||
5782170-C-A | 5914129-C-A | *** | ||||||
5842385-G-A | 5974344-G-A | *** | ||||||
14938037-G-A | 12826112-G-A | *** | ||||||
14938052-A-G | 12826127-A-G | *** | ||||||
16749739-TTTG-T | 14637859-TTTG-T | *** | ||||||
6677056-C-A | 6809015-C-A | *** | ||||||
19060407-A-G | 16948527-A-G | *** | ||||||
15448890-A-G | 13337010-A-G | *** | ||||||
17652207-C-A | 15540327-C-A | *** | ||||||
4503069-G-T | 4635028-G-T | *** | ||||||
10965527-T-A | *** | |||||||
14247903-C-A | 12127197-C-A | *** | ||||||
23054258-GA-G | 20892372-GA-G | 9×A | *** | |||||
16955583-G-A | 14843703-G-A | *** | ||||||
19042710-G-T | 16930830-G-T | *** | ||||||
8151144-C-A | 8283103-C-A | *** | ||||||
22207018-C-A | 20045132-C-A | *** | ||||||
21163234-G-A | 19001348-G-A | *** | ||||||
19045687-CTTTT-C | 16933807-CTTTT-C | 17×T | *** | |||||
22111301-C-CT | 19949415-C-CT | *** | ||||||
10757955-C-A | *** | |||||||
10693403-T-C | *** | |||||||
10693404-TAAATC-T | *** | |||||||
14147703-C-A | 12026997-C-A | *** | ||||||
18614192-C-A | 16502312-C-A | *** | ||||||
14318460-C-A | 12197754-C-A | *** | ||||||
23257927-CT-C | 21096041-CT-C | 9×T | *** | |||||
10684219-C-A | *** | |||||||
7187584-CTTT-C | 7319543-CTTT-C | 15×T | *** | |||||
56837204-C-A | *** | |||||||
14007942-CA-C,CAA | 11887236-CA-C,CAA | 15×A | *** | |||||
8751076-GTATATA-G | 8883035-GTATATA-G | 10×TA | *** | |||||
10682529-T-A,C | *** | |||||||
3286844-C-A | 3418803-C-A | *** | ||||||
9498937-C-A | 9661328-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 548140 | 9026148 | 7411099 | 7351885 |
Used in age calculations | 9026148 | 7411099 | 7351885 |
Counts of SNPs | 17 | 19 |
Big Tree Main Page