Clemons

BigY3: 418901, BigY2: 418901
MDKA Birth: United States > South Carolina

Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z258 > Z367/S255 > Z34/S368 > Z33/S212 > ZZ71 > BY34111 > BY34109 > HU222

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
418901		BigY2
418901
10844619-A-T A+
3304954-A-G 3436913-A-G FT27567 A+
11003750-C-A A*
28811080-A-T 26664933-A-T A*
22290307-T-C 20128421-T-C DYZ19 A*
24637407-T-A 22491260-T-A P3_t2 A*
28817689-G-A 26671542-G-A A*
21013084-A-ATT 18851198-A-ATT P4_Dst 14×TA*
56831031-C-T A*
10093001-G-T 10255392-G-T A*
19654880-C-T 17543000-C-T P5_Prx A*
19668640-T-G 17556760-T-G P5_Prx A*
20413178-A-G 18251292-A-G P5_Dst A*
25964097-G-T 23817950-G-T P1_Y1 A*
22171094-A-C 20009208-A-C FT65398 Y+**
23504938-T-G 21343052-T-G YY+**
11733-T-C ++
3068479-C-T 3200438-C-T FT27480 +
4338384-A-G 4470343-A-G FT64658 +
4478442-G-A 4610401-G-A FT64678 +
4654505-C-G 4786464-C-G FT64713 +
5136034-G-T 5267993-G-T FT64786 +
5382267-C-T 5514226-C-T FT64824 +
5864009-T-C 5995968-T-C FT64884 +
6421012-C-T 6552971-C-T FT64927 +
6422147-C-T 6554106-C-T FT64928 +
13550822-C-T 11395146-C-T FT165167 +
13943181-C-T 11822475-C-T FT65081 YY+
14305455-G-T 12184749-G-T FT65110 Y+
15400688-A-G 13288808-A-G FT65159 Y+
17453156-G-T 15341276-G-T FT65250 Y+
23558556-T-TCA 21396670-T-TCA 12×CA*
13601982-A-AAC 11446306-A-AAC 14×AC*
10625092-T-A *
56869388-G-A *
7863189-A-G 7995148-A-G **
17287347-T-C 15175467-T-C PR2383 **
16860783-AG-A 14748903-AG-A **
6605511-TTATA-T 6737470-TTATA-T 14×TA**
8776546-G-T 8908505-G-T **
26120198-C-T 23974051-C-T P1_Y1 **
13453133-C-T 11297457-C-T **
15211293-T-C 13099379-T-C Z1602 CTS3823 **
15641843-C-T 13529963-C-T CTS4431 **
22022717-A-G 19860831-A-G PF4773 **
23304503-C-T 21142617-C-T Y28084 **
58986659-G-T 56840512-G-T **
6513400-C-A 6645359-C-A **
21818129-G-GT 19656243-G-GT 8×T**
22811094-A-G 20649208-A-G **
18817019-C-CTAAA 16705139-C-CTAAA 10×TAAA**
13486621-G-C 11330945-G-C **
15416830-GAA-G 13304950-GAA-G 12×A**
58834005-T-A 56756866-A-T **
9468800-C-A 9631191-C-A **
15585186-GA-G 13473306-GA-G 10×A**
10937495-C-A **
15248954-T-G 13137040-T-G **
10887879-C-A **
10887883-C-T **
10887895-T-C **
10887937-C-T **
5059563-C-T 5191522-C-T **
18577985-C-A 16466105-C-A **
11020339-C-A **
16531080-C-A 14419200-C-A **
19547538-A-G 17435658-A-G **
26282893-A-T 24136746-A-T P1_Y1 **
11033930-C-T **
15402848-A-C 13290968-A-C **
13474089-C-T 11318413-C-T **
15556091-C-A 13444211-C-A **
13461170-C-T 11305494-C-T **
11034824-C-A **
11034835-A-T **
11004454-C-G **
26120190-C-T 23974043-C-T P1_Y1 **
6429581-C-A 6561540-C-A **
10887848-T-G **
3374009-G-T 3505968-G-T **
2746660-C-A 2878619-C-A **
10792449-T-C **
10792450-T-A **
20603914-G-T 18442028-G-T P5_Dst **
8321435-C-A 8453394-C-A 15×T**
4746352-T-TCA 4878311-T-TCA **
8398839-GC-G 8530798-GC-G **
8600009-C-A 8731968-C-A 13×T**
10880708-AATTCCATTCC-A **
10841072-CATTCA-C **
10841094-A-T FT47026 **
11020299-C-A **
16244792-GGTGTGTGT-G 14132912-GGTGTGTGT-G 16×GT**
10954363-C-G **
10757962-T-A **
10912817-A-G **
10880994-A-C **
10881015-T-C **
10881020-A-T **
10881035-A-T **
10778972-A-C **
10778978-T-C **
10778988-T-G **
10779002-A-C **
10663799-T-C **
6330227-CA-C 6462186-CA-C IR3_Dst **
11020350-A-C **
2885071-GTT-G 3017030-GTT-G 13×T**
10757957-T-TTTCAC **
5204639-AC-A 5336598-AC-A **
10776104-C-G **
20469715-CAAA-C 18307829-CAAA-C P5_Dst **
10841081-C-T **
15479942-CTTTTTT-C 13368062-CTTTTTT-C 21×T**
10678884-G-T **
14296725-C-A 12176019-C-A **
7127349-C-A 7259308-C-A **
15402854-G-A 13290974-G-A Y132729 **
10979583-C-A **
11004431-A-T **
11004441-A-ATTACGGATGT **
10758021-A-T **
28763493-C-A 26617346-C-A **
10989865-C-T **
10989895-C-G **
15288207-C-A 13176306-C-A **
16454733-C-A 14342853-C-A **
7360709-C-A 7492668-C-A **
13865619-C-A 11744913-C-A DYZ17 **
15403640-C-A 13291760-C-A **
15664024-A-G 13552144-A-G **
10932094-T-C **
27699840-G-T 25553693-G-T P1_Y2 **
18052763-C-A 15940883-C-A **
16302335-C-A 14190455-C-A **
3272754-C-A 3404713-C-A **
18289758-C-A 16177878-C-A P6_Prx **
22515217-C-A 20353331-C-A **
19547580-C-A 17435700-C-A **
10776061-A-AC **
10870629-T-A **
6773410-C-A 6905369-C-A **
13429982-C-A 11274306-C-A **
15724292-C-A 13612412-C-A **
6268864-GAC-G 6400823-GAC-G IR3_Dst **
19472655-C-A 17360775-C-A **
10860033-A-T **
19600441-A-G 17488561-A-G P5_Prx **
13486614-G-GT 11330938-G-GT **
7362048-TTATA-T 7494007-TTATA-T 10×TA**
13461197-T-A 11305521-T-A **
13461207-G-A 11305531-G-A **
8732178-G-T 8864137-G-T **
13486645-C-A 11330969-C-A **
5084636-C-A 5216595-C-A **
19547549-A-C 17435669-A-C **
23315967-C-A 21154081-C-A **
19183860-T-G 17071980-T-G **
13800814-G-T 11680108-G-T DYZ17 **
14398400-C-A 12277696-C-A **
10751090-A-T **
10751093-C-T **
16505989-T-A 14394109-T-A **
10956541-T-C **
21299276-C-A 19137390-C-A **
11009738-C-A **
19183910-G-C 17072030-G-C **
22903832-G-GTA 20741946-G-GTA **
9730682-C-A 9893073-C-A IR3_Prx **
17315102-C-A 15203222-C-A **
13642877-T-C 11487201-T-C **
9069911-G-T 9232302-G-T **
16569441-C-A 14457561-C-A **
17928630-C-A 15816750-C-A **
5926956-G-T 6058915-G-T **
15209521-TA-T 13097607-TA-T 9×A**
10954311-C-T **
2682716-C-A 2814675-C-A **
19547553-T-C 17435673-T-C **
56837278-C-A **
18263893-C-A 16152013-C-A **
14635751-A-C 12523820-A-C **
15579325-C-A 13467445-C-A **
10752754-C-T **
10825633-A-C **
7253866-C-A 7385825-C-A **
6238671-AC-A 6370630-AC-A IR3_Dst **
7374509-C-A 7506468-C-A **
19047971-C-A 16936091-C-A **
10752749-T-G **
8216653-C-T 8348612-C-T Y6944 **
14607696-G-T 12495898-G-T **
5620950-C-A 5752909-C-A **
10876726-C-A **
6341222-CAAAA-C 6473181-CAAAA-C IR3_Dst 15×A**
56851276-C-A **
11020901-G-T **
10864704-A-G **
15428296-C-A 13316416-C-A **
7292113-C-A 7424072-C-A **
11013209-AT-A **
22712924-C-A 20551038-C-A **
13584271-C-A 11428595-C-A **
10865810-T-TTCCAC **
14807451-C-A 12695522-C-A **
10954324-T-A **
10971577-C-A **
17607511-C-A 15495631-C-A **
9959001-C-A 10121392-C-A **
10776084-C-CCAATG **
7335542-T-C 7467501-T-C **
22101941-C-A 19940055-C-A **
15259324-C-A 13147408-C-A **
7428246-C-A 7560205-C-A **
9509285-G-T 9671676-G-T **
23061080-C-A 20899194-C-A **
13858529-G-T 11737823-G-T DYZ17 **
23439921-G-A 21278035-G-A **
19240766-A-ATT 17128886-A-ATT 15×T**
23369620-C-A 21207734-C-A **
18981267-C-A 16869387-C-A **
14743877-C-A 12631946-C-A **
3374133-G-T 3506092-G-T **
15844490-C-A 13732610-C-A **
15324213-G-A 13212331-G-A **
13982935-C-A 11862229-C-A **
17074635-A-C 14962755-A-C **
7994090-C-A 8126049-C-A **
9732832-G-T 9895223-G-T IR3_Prx **
16217995-C-A 14106115-C-A **
10973613-ATTCCG-A **
15821536-G-A 13709656-G-A **
23792475-A-G 21630589-A-G **
13349657-C-A 11193981-C-A **
19183868-A-G 17071988-A-G **
19183870-A-C 17071990-A-C **
10825655-T-A **
8665678-A-G 8797637-A-G **
8665696-T-C 8797655-T-C **
10812845-G-T **
10812849-C-A **
10812865-G-A **
10812868-A-T **
10812887-G-A **
14422877-C-A 12302152-C-A **
21604287-C-A 19442401-C-A **
16651887-C-A 14540007-C-A **
18011005-CTTT-C 15899125-CTTT-C P7_Dst 20×T**
18569831-C-A 16457951-C-A **
14418992-A-C 12298267-A-C **
6090200-C-T 6222159-C-T FT114941 **
28698606-A-G 26552459-A-G **
4062753-C-A 4194712-C-A **
9126126-G-T **
10868457-C-A **
26120199-T-TC 23974052-T-TC P1_Y1 **
17287330-C-T 15175450-C-T FT169608 **
17287345-A-T 15175465-A-T FT270217 **
14952663-C-A 12840737-C-A **
10014984-ATTTTTTTTTTT-A 10177375-ATTTTTTTTTTT-A 27×T**
17644427-C-A 15532547-C-A **
3011717-C-A 3143676-C-A **
2740662-C-A 2872621-C-A **
2799623-C-A 2931582-C-A **
3179399-C-A 3311358-C-A **
3179430-C-A 3311389-C-A **
4063903-G-A 4195862-G-A **
4110751-G-T 4242710-G-T **
4140252-C-A 4272211-C-A **
4961429-G-T 5093388-G-T **
5059568-A-AT 5191527-A-AT **
5184167-A-T 5316126-A-T **
5867406-C-A 5999365-C-A **
5871868-A-T 6003827-A-T **
5874146-C-A 6006105-C-A **
5970699-C-A 6102658-C-A **
6147562-T-A 6279521-T-A IR3_Dst **
6147568-G-C 6279527-G-C IR3_Dst **
6147571-G-C 6279530-G-C IR3_Dst **
6147572-T-C 6279531-T-C IR3_Dst **
6238694-C-A 6370653-C-A IR3_Dst **
6429523-T-C 6561482-T-C **
6892212-C-A 7024171-C-A **
7043599-G-T 7175558-G-T **
7073756-G-C 7205715-G-C **
7073790-T-C 7205749-T-C **
7111886-C-CT 7243845-C-CT **
7251065-A-C 7383024-A-C **
7285031-C-A 7416990-C-A **
7359271-C-A 7491230-C-A **
7378507-A-T 7510466-A-T **
7671036-C-A 7802995-C-A **
7758122-C-A 7890081-C-A **
7975600-T-C 8107559-T-C **
8289122-T-TA 8421081-T-TA **
8379635-T-A 8511594-T-A **
8665686-A-G 8797645-A-G **
8665692-T-G 8797651-T-G **
8665694-T-G 8797653-T-G **
8690779-A-T 8822738-A-T **
8699848-C-A 8831807-C-A **
8807081-G-T 8939040-G-T **
8810803-G-GT 8942762-G-GT **
8867021-G-T 8998980-G-T **
9044173-G-T 9206564-G-T **
9068932-T-C 9231323-T-C **
9082407-C-A 9244798-C-A **
9198132-C-T 9360523-C-T **
9397876-A-C 9560267-A-C **
9399112-G-T 9561503-G-T **
9399135-C-A 9561526-C-A **
9674142-T-G 9836533-T-G IR3_Prx **
9777528-A-T 9939919-A-T **
9865337-G-T 10027728-G-T **
10014984-ATTTTTTTTTTTT-A 10177375-ATTTTTTTTTTTT-A 27×T**
10648062-C-A **
10658590-TGC-T **
10693604-C-A **
10770408-T-C **
10775989-G-GCATGGAATTC **
10776005-C-CATGGA **
10776025-C-CATGGA **
10787030-C-T **
10825677-C-T **
10864679-C-A **
10869497-C-T **
10894067-A-G **
10912828-C-A **
10929541-C-A **
10932103-G-T **
10932105-G-C **
10932107-G-A **
10932126-G-A **
10988868-T-G **
11020896-T-A **
11021465-T-G **
13318024-T-A 11162348-T-A **
13472112-C-G 11316436-C-G **
11645364-T-C DYZ17 **
13809212-T-G 11688506-T-G DYZ17 **
13809228-GAAACT-G 11688522-GAAACT-G DYZ17 **
13929912-A-G 11809206-A-G FTA27814 **
13942554-C-A 11821848-C-A **
14067892-T-G 11947186-T-G **
14193015-C-A 12072309-C-A **
14196127-C-A 12075421-C-A **
14201828-A-G 12081122-A-G **
14220422-C-A 12099716-C-A **
14278661-C-T 12157955-C-T FTA39075 ****
14299786-C-T 12179080-C-T **
14420154-A-G 12299429-A-G **
14444892-C-A 12324165-C-A **
14452623-C-A 12331896-C-A **
14470540-A-G 12349809-A-G **
14511938-G-T 12400143-G-T **
14573061-A-G 12461261-A-G **
14587551-C-A 12475751-C-A **
14743739-T-C 12631808-T-C **
14776026-T-G 12664095-T-G **
14956537-C-A 12844612-C-A **
14981947-C-A 12870015-C-A **
14998647-A-C 12886732-A-C BY98987 **
15049943-A-C 12938034-A-C **
15049953-A-C 12938044-A-C **
15093489-T-C 12981577-T-C **
15250655-G-A 13138741-G-A **
15324220-C-T 13212338-C-T **
15324221-A-G 13212339-A-G **
15324226-A-G 13212344-A-G **
15324231-C-T 13212349-C-T **
15402857-T-A 13290977-T-A **
15422816-A-C 13310936-A-C **
15452512-G-A 13340632-G-A **
15509190-C-A 13397310-C-A **
15589521-A-T 13477641-A-T **
15746203-G-T 13634323-G-T **
15821515-T-C 13709635-T-C **
15821517-A-G 13709637-A-G **
15821518-G-C 13709638-G-C **
15821538-C-T 13709658-C-T FT355572 **
15828560-C-A 13716680-C-A **
15878477-AT-A 13766597-AT-A 8×T**
15982069-C-A 13870189-C-A **
16279221-T-G 14167341-T-G **
16345062-T-G 14233182-T-G **
16375995-A-G 14264115-A-G **
16417278-A-C 14305398-A-C **
16676714-G-T 14564834-G-T **
16696256-C-T 14584376-C-T **
16968294-C-A 14856414-C-A **
17038644-C-A 14926764-C-A **
17199410-A-T 15087530-A-T **
17270755-C-A 15158875-C-A **
17287333-C-T 15175453-C-T **
17366978-A-C 15255098-A-C **
17417013-C-A 15305133-C-A **
17673670-C-A 15561790-C-A **
17898010-T-G 15786130-T-G **
17978476-A-C 15866596-A-C **
18133723-T-C 16021843-T-C **
18389297-A-C 16277417-A-C P6_Gap **
18554310-A-C 16442430-A-C **
18573519-C-A 16461639-C-A **
18821314-AC-A 16709434-AC-A **
18892198-CTATTTTATTTTTATTTTATTTTATTTTATTTTATTT-C 16780318-CTATTTTATTTTTATTTTATTTTATTTTATTTTATTT-C **
19060096-G-A 16948216-G-A **
19113760-G-T 17001880-G-T **
19152020-C-A 17040140-C-A **
19231412-T-C 17119532-T-C **
19250673-T-TG 17138793-T-TG **
19448329-A-C 17336449-A-C **
19449185-T-G 17337305-T-G **
19504115-C-A 17392235-C-A **
19504124-C-A 17392244-C-A **
19523642-C-A 17411762-C-A **
19636411-C-A 17524531-C-A P5_Prx **
20611556-G-T 18449670-G-T P5_Dst **
20712313-C-A 18550427-C-A P4_Prx **
21134334-C-A 18972448-C-A **
21354034-C-A 19192148-C-A **
21407794-G-A 19245908-G-A **
21444764-C-A 19282878-C-A **
21499011-C-A 19337125-C-A **
21908426-T-C 19746540-T-C **
21998611-C-A 19836725-C-A **
22063774-C-A 19901888-C-A **
22322045-A-G 20160159-A-G DYZ19 **
22656416-C-A 20494530-C-A **
23041305-C-A 20879419-C-A **
23446810-G-A 21284924-G-A **
24220992-G-T 22074845-G-T P3_b1 **
24583337-T-TG 22437190-T-TG P3_t2 **
25356074-A-T 23209927-A-T P2_r2 **
25356107-A-T 23209960-A-T P2_r2 **
26170518-A-T 24024371-A-T P1_Y1 **
28459243-G-A 26313096-G-A **
28513943-C-A 26367796-C-A **
28724398-G-C 26578251-G-C **
28772822-A-G 26626675-A-G **
16096933-A-C 13985053-A-C P8_Prx **
17669700-C-CATATATAT 15557820-C-CATATATAT 15×AT**
2775142-CA-C 2907101-CA-C **
3320904-G-T 3452863-G-T FT112782 **
7155782-A-AG 7287741-A-AG **
7966372-G-A 8098331-G-A **
13459144-T-G 11303468-T-G **
14047632-G-A 11926926-G-A **
14575261-T-A 12463461-T-A **
16096978-T-G 13985098-T-G P8_Prx **
21953246-A-C 19791360-A-C **
23361286-T-A 21199400-T-A **
2846627-A-AT 2978586-A-AT 12×T***
8126299-TTTTTA-T 8258258-TTTTTA-T 9×TTTTA***
17575480-ATT-A 15463600-ATT-A 37×T***
5635377-A-G 5767336-A-G ***
16178671-C-A 14066791-C-A ***
3942640-A-AT 4074599-A-AT 10×T***
10801677-C-T ***
10804805-C-A ***
13808729-G-T 11688023-G-T DYZ17 ***
11033903-T-A ***
15179010-CAAAA-C 13067096-CAAAA-C 25×A***
17414335-CATTATT-C 15302455-CATTATT-C 12×ATT***
10686964-A-ACTCCA,G ***
10911740-A-C,G ***
19411175-TA-T,TAA 17299295-TA-T,TAA 13×A***
10682517-C-T ***
10807315-G-A ***
10807316-G-A ***
13478411-C-A 11322735-C-A ***
10757983-T-C ***
14847004-CA-C,CAA 12735070-CA-C,CAA 20×A***
10801678-A-G ***
10800492-T-G ***
10800495-T-A ***
10949553-A-T ***
14886399-CAAAA-C 12774465-CAAAA-C 21×A***
10757987-C-G ***
10758007-C-T ***
7188521-C-A 7320480-C-A ***
11036083-T-TCC ***
10758028-T-G ***
10757989-A-C,G ***
16631742-C-A 14519862-C-A ***
14880971-G-GA 12769041-G-GA 10×A***
16573660-CA-C 14461780-CA-C 10×A***
10687977-C-A ***
19486859-CTT-C,CTTT 17374979-CTT-C,CTTT 16×T***
22166532-CTTCT-C 20004646-CTTCT-C ***
14527101-G-T 12415302-G-T ***
15816224-C-A 13704344-C-A ***
35826-A-T FGC78731 ***
19231319-CTT-C,CTTT 17119439-CTT-C,CTTT 24×T***
7310571-CTTTT-C 7442530-CTTTT-C 21×T***
13457781-G-GAGTT 11302105-G-GAGTT ***
13960976-CAAA-C,CAA 11840270-CAAA-C,CAA 14×A***
16371118-ATT-A,AT 14259238-ATT-A,AT 15×T***
15740532-C-A 13628652-C-A ***
13453389-G-T 11297713-G-T ***
35831-T-C ***
16417222-C-A 14305342-C-A ***
6429040-CA-C 6560999-CA-C 9×A***
10667074-C-A ***
28356465-G-GT 26210318-G-GT P1_gr2 18×T***
10686986-G-C,T ***
8832763-G-T 8964722-G-T ***
17332750-CAAA-C,CAAAA 15220870-CAAA-C,CAAAA 22×A***
8267415-G-GA 8399374-G-GA 8×A***
19388472-C-A 17276592-C-A ***
11009791-T-C ***
8171084-C-A 8303043-C-A ***
14208891-C-A 12088185-C-A ***
10877800-C-T ***
9111479-G-T 9273870-G-T ***
24001359-C-A 21855212-C-A ***
10667251-G-T ***
15281272-C-A 13169371-C-A ***
17392401-C-A 15280521-C-A ***
11643698-G-GAAACAAAGTGTAAA DYZ17 ***
10758017-A-C,G ***
10898357-C-A ***
15700226-C-A 13588346-C-A ***
2869063-G-T 3001022-G-T ***
2970383-T-C 3102342-T-C ***
6374027-G-T 6505986-G-T ***
6644440-C-A 6776399-C-A ***
6826584-C-A 6958543-C-A ***
7109892-G-GAA 7241851-G-GAA 11×A***
7619974-C-T 7751933-C-T ***
8013371-T-C 8145330-T-C ***
8034114-ATT-A 8166073-ATT-A 10×T***
8844436-T-C 8976395-T-C ***
9061737-AT-A 9224128-AT-A ***
9649673-C-A 9812064-C-A IR3_Prx ***
9865511-C-A 10027902-C-A ***
10667253-A-C ***
10667255-C-T ***
10667259-T-C ***
10677496-CACTCC-C,CACTCT ***
10686980-T-A,C ***
10875016-G-T ***
10946236-C-A ***
13453362-TCCATTCCATT-T,TCCATTCCATG 11297686-TCCATTCCATT-T,TCCATTCCATG ***
13456048-C-A 11300372-C-A ***
13634146-C-A 11478470-C-A FT446824 ***
14317908-C-A 12197202-C-A ***
14574187-C-A 12462387-C-A ***
14723972-C-A 12612040-C-A ***
14775648-C-A 12663717-C-A ***
14885636-C-A 12773702-C-A ***
15144999-A-G 13033086-A-G ***
15336088-C-A 13224206-C-A ***
15341509-T-C 13229628-T-C ***
15475886-C-A 13364006-C-A ***
15501975-C-A 13390095-C-A ***
15972936-C-A 13861056-C-A ***
16247261-C-A 14135381-C-A ***
17028713-T-C 14916833-T-C ***
17662010-ATGTGTGTGTG-A 15550130-ATGTGTGTGTG-A 21×TG***
17872873-G-A 15760993-G-A ***
18222824-C-A 16110944-C-A ***
18237346-C-A 16125466-C-A ***
21362500-C-A 19200614-C-A ***
21751465-G-T 19589579-G-T ***
21895717-G-A 19733831-G-A ***
23293914-C-A 21132028-C-A ***
23446103-C-A 21284217-C-A ***
23482894-CAAAAA-C,CAA 21321008-CAAAAA-C,CAA 15×A***
24001360-A-G 21855213-A-G ***
24205992-C-A 22059845-C-A P3_b1 ***
24407172-G-A 22261025-G-A ***
56851531-G-T ***
6644597-C-CTT 6776556-C-CTT 15×T***
10627035-T-G ***
10627043-C-A ***
2747786-A-TTT 2879745-A-TTT 8×AT***
3253829-CAAA-C,CAA 3385788-CAAA-C,CAA 18×A***
3370618-A-G 3502577-A-G ***
5223302-CAA-C,CA 5355261-CAA-C,CA 16×A***
5493420-C-A 5625379-C-A ***
5563451-CT-C,CTT 5695410-CT-C,CTT 11×T***
6029954-G-C 6161913-G-C ***
16625458-T-C 14513578-T-C ***
17030588-CT-C,CTTT 14918708-CT-C,CTTT 16×T***
17143891-ATTTTTT-A,ATTTTT 15032011-ATTTTTT-A,ATTTTT 35×T***
17902798-A-T 15790918-A-T ***
18980284-A-T 16868404-A-T ***
18980286-AC-A 16868406-AC-A ***
18980295-G-C 16868415-G-C ***
22153336-A-G 19991450-A-G ***
23424223-T-C 21262337-T-C ***
35818-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.