Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > FGC10125 > FGC10117

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B273628
27823-G-A +
22443999-A-C 20282113-A-C BY219329 DYZ19 +
8123495-C-G 8255454-C-G BY190048 YY+
21605667-G-A 19443781-G-A BY191761 YY+
15957331-C-A 13845451-C-A BY190862 YY+
18419713-T-TTG 16307833-T-TTG P6_Gap 16×TG*
13452051-G-A,T 11296375-G-A,T *
11017636-ATCCAT-A **
11008285-A-G **
10973900-C-G **
10973893-C-G **
10965619-C-A **
10958293-C-A **
10808641-C-T **
10956596-T-A **
10892815-C-A **
10808598-T-TTCTAA **
10764621-A-C **
10617787-A-G **
10051154-C-A 10213545-C-A **
13405102-C-A 11249426-C-A **
13489105-C-G 11333429-C-G **
13476973-C-A 11321297-C-A **
14351354-C-T 12230649-C-T **
14933706-T-C 12821771-T-C **
14933701-G-GC 12821766-G-GC **
14570836-C-A 12459036-C-A **
14397985-T-C 12277281-T-C **
14375857-CAGAG-C 12255153-CAGAG-C 9×AG**
14369085-G-A 12248381-G-A **
14351358-A-G 12230653-A-G **
14351352-A-G 12230647-A-G **
10024163-G-C 10186554-G-C **
14241336-C-A 12120630-C-A **
14030811-C-A 11910105-C-A **
13974224-T-A 11853518-T-A **
13937095-A-T 11816389-A-T **
13857765-A-T 11737059-A-T **
13627010-C-A 11471334-C-A **
13571714-G-T 11416038-G-T **
13489185-C-G 11333509-C-G **
10024182-T-A 10186573-T-A **
9713848-T-TA 9876239-T-TA IR3_Prx **
10012653-G-T 10175044-G-T **
14527780-C-A 12415981-C-A **
4925634-G-T 5057593-G-T **
3609985-A-G 3741944-A-G **
3332150-A-G 3464109-A-G **
3286300-C-T 3418259-C-T **
24627794-CGT-C 22481647-CGT-C P3_t2 **
2884152-T-G 3016111-T-G **
16592511-C-A 14480631-C-A **
5709917-A-G 5841876-A-G **
10983912-C-T **
15364059-C-CAA 13252179-C-CAA 21×A**
15397731-C-A 13285851-C-A **
25647028-CAA-C 23500881-CAA-C P1_b3 **
9514887-C-A 9677278-C-A **
28531310-A-G 26385163-A-G **
13213751-CATGGATGG-C 11058075-CATGGATGG-C 9×ATGG**
5557566-C-A 5689525-C-A **
5761401-A-G 5893360-A-G **
9943575-C-A 10105966-C-A **
7222046-TA-T 7354005-TA-T **
15066287-G-GT 12954378-G-GT **
9415795-C-A 9578186-C-A **
8078389-TATGGGGG-T 8210348-TATGGGGG-T **
8073428-G-A 8205387-G-A **
8072322-C-A 8204281-C-A **
7722829-C-A 7854788-C-A **
7234360-A-G 7366319-A-G **
7166920-A-C 7298879-A-C **
6384586-G-T 6516545-G-T **
7128131-CA-C 7260090-CA-C **
7128117-A-C 7260076-A-C **
7128115-A-C 7260074-A-C **
7128113-T-C 7260072-T-C **
7128107-A-G 7260066-A-G **
7127233-C-A 7259192-C-A **
6524025-A-C 6655984-A-C **
14989104-C-A 12877170-C-A **
15418579-A-G 13306699-A-G **
15093699-T-C 12981787-T-C **
22978928-C-A 20817042-C-A **
23723513-T-A 21561627-T-A **
23511927-A-G 21350041-A-G **
23391806-C-A 21229920-C-A **
23205415-A-G 21043529-A-G **
23013571-T-A 20851685-T-A **
22979154-C-A 20817268-C-A **
22624675-C-A 20462789-C-A **
24336794-T-C 22190647-T-C P3_t1 **
22092874-C-A 19930988-C-A **
21748350-T-G 19586464-T-G **
21624418-C-A 19462532-C-A **
21624390-C-A 19462504-C-A **
21556722-A-G 19394836-A-G **
21545811-C-A 19383925-C-A **
21545701-T-A 19383815-T-A **
24302711-C-T 22156564-C-T P3_t1 **
26400367-G-T 24254220-G-T P1_Y1 **
21048138-C-A 18886252-C-A **
28531313-G-A 26385166-G-A **
28812507-G-C 26666360-G-C **
28531344-T-C 26385197-T-C **
28531335-G-C 26385188-G-C **
28531333-A-G 26385186-A-G **
28531328-C-T 26385181-C-T **
28531320-CAAA-C 26385173-CAAA-C **
28531320-C-G 26385173-C-G **
28531273-G-C 26385126-G-C **
27216685-T-C 25070538-T-C P1_g3 **
28531271-T-C 26385124-T-C **
28531251-T-C 26385104-T-C **
28531246-CT-C 26385099-CT-C **
28531240-G-GGGAGGT 26385093-G-GGGAGGT **
28531235-A-T 26385088-A-T **
27647532-G-T 25501385-G-T P1_Y2 **
27266460-A-G 25120313-A-G P1_g3 **
21391662-T-TC 19229776-T-TC **
20647793-T-A 18485907-T-A P4_Prx **
15161090-A-AGACAG 13049176-A-AGACAG **
16134803-C-A 14022923-C-A **
16952665-C-A 14840785-C-A **
16933344-C-A 14821464-C-A **
16651992-G-T 14540112-G-T **
16352618-C-A 14240738-C-A **
16309011-C-T 14197131-C-T **
16308994-C-A 14197114-C-A **
16199646-C-A 14087766-C-A **
16089917-C-A 13978037-C-A **
17074881-C-T 14963001-C-T **
15971275-C-T 13859395-C-T **
15956943-C-A 13845063-C-A **
15670226-A-C 13558346-A-C **
15593154-A-G 13481274-A-G **
15559301-A-G 13447421-A-G **
15559282-T-C 13447402-T-C **
16341100-C-A 14229220-C-A **
17056961-TAAA-T 14945081-TAAA-T **
17317346-C-A 15205466-C-A **
20637744-GT-G 18475858-GT-G P4_Prx **
18195451-C-A 16083571-C-A BY207750 **
20478248-GTTTT-G 18316362-GTTTT-G P5_Dst 13×T**
19297067-C-A 17185187-C-A **
19293961-T-G 17182081-T-G **
18917387-T-C 16805507-T-C **
18744249-T-C 16632369-T-C **
18528936-G-T 16417056-G-T P6_Dst **
18465169-A-T 16353289-A-T P6_Dst **
17940103-C-T 15828223-C-T **
17362558-T-C 15250678-T-C **
17940096-C-CT 15828216-C-CT **
17940094-C-T 15828214-C-T **
17940090-GC-G 15828210-GC-G **
17928878-C-T 15816998-C-T **
17916076-G-A 15804196-G-A **
17629780-C-A 15517900-C-A **
17514184-C-A 15402304-C-A **
19415291-C-A 17303411-C-A **
58976167-T-C 56830020-T-C **
13489170-C-T 11333494-C-T **
18270395-C-T 16158515-C-T **
7308236-C-A 7440195-C-A **
17940100-T-C 15828220-T-C **
28798735-C-A 26652588-C-A **
19509729-C-A 17397849-C-A **
22447698-T-G 20285812-T-G DYZ19 **
14605808-C-A 12494010-C-A **
5443861-C-A 5575820-C-A **
11008297-G-T **
18329044-T-C 16217164-T-C P6_Prx **
15126157-C-A 13014244-C-A **
2717048-C-A 2849007-C-A **
10916053-G-T **
56826851-C-T **
10776123-T-C **
10776092-C-CTAAAT **
10776057-T-TTGCTC **
3267400-C-A 3399359-C-A **
13799130-G-T 11678424-G-T **
6992553-CTTT-C 7124512-CTTT-C 17×T**
11008345-C-T **
10992978-C-G **
13578521-G-A 11422845-G-A **
9936004-C-A 10098395-C-A **
14871107-C-A 12759177-C-A **
28531354-C-T 26385207-C-T **
9444667-C-A 9607058-C-A **
23393431-C-A 21231545-C-A **
11008343-A-C **
21948874-C-A 19786988-C-A **
11008341-C-G **
18569829-C-A 16457949-C-A **
11008337-C-G **
11008331-C-A **
11008326-G-A **
11008323-T-G **
11008314-C-T **
10842499-C-A **
12675898-AT-A 27×T**
10992993-C-T **
5459425-C-A 5591384-C-A **
13487686-C-T 11332010-C-T **
20943483-GT-G 18781597-GT-G P4_Dst **
13487773-C-T 11332097-C-T **
10973920-C-G **
24017409-T-TA 21871262-T-TA **
10688039-C-A **
24904717-C-A 22758570-C-A g1 **
56836746-TTCCAC-T **
28531318-C-T 26385171-C-T **
11001497-G-A **
23025261-G-T 20863375-G-T **
58973012-T-C 56826865-T-C **
58976171-A-T 56830024-A-T **
16205294-A-G 14093414-A-G **
58976152-C-A 56830005-C-A **
58976194-C-CCACTG 56830047-C-CCACTG **
18226119-C-A 16114239-C-A **
56825883-T-G **
27847759-TG-T 25701612-TG-T P1_Y2 **
10747017-C-G **
10686583-A-T **
21890929-C-A 19729043-C-A **
56828954-C-G **
10686655-C-T **
7111028-C-A 7242987-C-A **
20840804-G-T 18678918-G-T P4_Gap **
15746870-A-C 13634990-A-C **
7641019-C-A 7772978-C-A **
13461028-G-A 11305352-G-A **
15699911-A-G 13588031-A-G **
9482221-C-A 9644612-C-A **
56829988-C-T **
16245943-G-T 14134063-G-T **
22236866-G-T 20074980-G-T DYZ19 **
7163224-C-A 7295183-C-A **
14007365-C-A 11886659-C-A **
10992984-C-T **
11008339-A-G **
18222678-A-G 16110798-A-G **
22277546-C-A 20115660-C-A DYZ19 **
11008403-T-C **
10776064-C-A **
13489160-C-A 11333484-C-A **
10983901-G-T **
56835974-C-A **
10764604-C-T **
17571903-C-A 15460023-C-A **
10899113-T-C **
21514091-C-A 19352205-C-A **
10686615-C-T **
28734941-C-A 26588794-C-A **
10965574-C-G **
14390051-G-A 12269347-G-A **
28070147-AC-A 25924000-AC-A P1_Y2 **
10990073-T-G **
16813966-C-A 14702086-C-A **
15527914-C-A 13416034-C-A **
13489148-T-A 11333472-T-A **
14054090-C-A 11933384-C-A **
10763153-T-TTCCACTCCACTCCAC **
10892838-T-C **
15756369-C-A 13644489-C-A **
6458012-C-A 6589971-C-A **
21363090-CAAAAA-C 19201204-CAAAAA-C 16×A**
9502525-G-T 9664916-G-T **
13223453-G-T 11067777-G-T **
10808613-C-G **
17074875-G-A 14962995-G-A **
22068507-C-A 19906621-C-A **
10973890-A-G **
7128106-T-G 7260065-T-G **
25990591-G-T 23844444-G-T P1_Y1 **
18430095-A-AG 16318215-A-AG P6_Dst **
3550677-C-A 3682636-C-A **
7499416-G-T 7631375-G-T IR1_L **
2980736-G-T 3112695-G-T **
10686606-C-T **
28531278-T-C 26385131-T-C **
10839821-G-T **
10808581-C-T **
3250712-C-A 3382671-C-A **
5190941-C-A 5322900-C-A **
13644055-C-A 11488379-C-A **
14568291-C-A 12456491-C-A **
15321257-G-GTA 13209375-G-GTA **
28804051-G-A 26657904-G-A **
4874777-G-T 5006736-G-T **
15740809-C-A 13628929-C-A **
18636785-A-AT 16524905-A-AT 9×T**
22099816-C-A 19937930-C-A **
13472315-C-A 11316639-C-A **
7018056-G-T 7150015-G-T **
16602636-TTC-T 14490756-TTC-T **
11008288-T-C **
15606830-C-A 13494950-C-A **
10965573-C-A **
10654135-G-A **
22963812-C-A 20801926-C-A **
14787829-T-A 12675900-T-A **
28531272-T-C 26385125-T-C **
4244622-ATTTTT-A 4376581-ATTTTT-A 16×T**
22747679-A-AT 20585793-A-AT 10×T***
13472242-C-A 11316566-C-A ***
18909591-C-CT 16797711-C-CT 10×T***
23840836-C-A 21678950-C-A ***
14073653-TTAAA-T 11952947-TTAAA-T 9×TAAA***
7324992-TA-T 7456951-TA-T 9×A***
28787364-G-A 26641217-G-A ***
17196749-TAGAAAGAA-T,TAGAA 15084869-TAGAAAGAA-T,TAGAA 14×AGAA***
2772753-T-C 2904712-T-C ***
14397971-A-G 12277267-A-G ***
28661362-C-A 26515215-C-A ***
13463145-A-C 11307469-A-C ***
13489513-C-G,T 11333837-C-G,T ***
13898864-G-T 11778158-G-T ***
13294509-G-GTT 11138833-G-GTT 12×T***
13461930-G-A 11306254-G-A ***
14521959-C-A 12410160-C-A ***
11643727-T-TGCAGG ***
27916471-G-T 25770324-G-T P1_Y2 ***
23352500-GT-G 21190614-GT-G ***
23138405-A-G 20976519-A-G ***
11014346-C-G ***
4179020-TAAAA-T 4310979-TAAAA-T 17×A***
16824978-C-A 14713098-C-A ***
17128535-CTTTT-C 15016655-CTTTT-C 25×T***
7850031-C-A 7981990-C-A ***
18003821-C-A 15891941-C-A P7_Gap ***
18191133-C-A 16079253-C-A ***
22173954-G-GAA 20012068-G-GAA 16×A***
7284268-C-A 7416227-C-A ***
14159981-A-G 12039275-A-G ***
7136847-C-A 7268806-C-A ***
16171232-C-A 14059352-C-A ***
21244315-C-A 19082429-C-A ***
3347169-C-A 3479128-C-A ***
21305847-C-G 19143961-C-G ***
14102318-TA-T,TATCTA 11981612-TA-T,TATCTA ***
21443124-G-A 19281238-G-A ***
11643749-G-C ***
21564344-C-A 19402458-C-A ***
11643754-G-C ***
21691578-A-G 19529692-A-G ***
5292415-T-C 5424374-T-C ***
4171991-C-A 4303950-C-A ***
22962414-G-GT,GTT 20800528-G-GT,GTT 20×T***
15220673-C-A 13108759-C-A ***
3385424-C-A 3517383-C-A ***
19240895-T-C 17129015-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B273628923583476197707577590
Used in age calculations923583476197707577590
Counts of SNPs33
Variant counts last updated 2019-10-11 02:52:08.



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