Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > FGC28995 > FGC28994 > FGC28989

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
MK11831
BigY2
MK11831
22245793-C-A 20083907-C-A DYZ19 A+
56837862-G-A A***
56831151-C-T A*
3286624-C-T 3418583-C-T A*
3700426-A-C 3832385-A-C A*
3614532-A-G 3746491-A-G A*
20425803-C-CA 18263917-C-CA P5_Dst 15×AA*
3765718-C-T 3897677-C-T A*
25599439-G-T 23453292-G-T P1_gr1 A*
56834407-C-T A*
13451108-G-A 11295432-G-A A*
58978141-A-T 56831994-A-T A*
56834452-C-T A*
56834379-A-T A*
13451031-C-G 11295355-C-G A*
56831903-C-A A*
8565786-A-AT 8697745-A-AT 10×TA*
13449265-G-A 11293589-G-A A*
13450053-A-G 11294377-A-G A*
4373237-A-G 4505196-A-G FGC76631 A*
58978064-C-T 56831917-C-T A*
13448402-C-T 11292726-C-T A*
3258383-G-A 3390342-G-A A*
19796950-A-C 17685070-A-C P5_Prx A*
3679254-T-C 3811213-T-C A*
3249735-A-G 3381694-A-G A*
3682248-T-A 3814207-T-A A3180 A*
3214873-T-C 3346832-T-C A*
5497651-G-A 5629610-G-A A*
28767252-G-T 26621105-G-T Y+**
8054959-CAAT-C 8186918-CAAT-C ++
4875021-T-C 5006980-T-C +**
22927800-G-A 20765914-G-A BY192069 YY++
16477834-CA-C 14365954-CA-C +**
8248257-C-G 8380216-C-G BY190073 YY++
17198383-C-T 15086503-C-T BY191094 YY++
14255557-A-C 12134851-A-C Y+
23133563-A-C 20971677-A-C BY192118 YY++
4317060-T-C 4449019-T-C *
3440990-C-T 3572949-C-T *
10892542-T-TCATTC *
28809338-A-G 26663191-A-G *
3676509-A-AT 3808468-A-AT 11×T*
3258163-G-T 3390122-G-T *
10746999-GTTCCA-G *
4491800-G-A 4623759-G-A *
10691344-C-CTCCAT *
4317065-T-C 4449024-T-C *
13449042-G-C 11293366-G-C *
13450279-C-T 11294603-C-T *
6054884-T-C 6186843-T-C *
10921118-CTCCAT-C *
13450116-CCATCCCATCCCATTCTATTCCATTC-C,CCATTCCATGCCATTCCATTCCATTT 11294440-CCATCCCATCCCATTCTATTCCATTC-C,CCATTCCATGCCATTCCATTCCATTT *
3581472-T-C 3713431-T-C *
13903050-C-A 11782344-C-A **
14067308-C-A 11946602-C-A **
14746446-C-A 12634515-C-A **
14070340-C-A 11949634-C-A **
14568448-C-A 12456648-C-A **
14253161-A-G 12132455-A-G **
14351472-A-G 12230767-A-G **
14032666-T-C 11911960-T-C **
14308369-A-C 12187663-A-C **
14421987-A-C 12301262-A-C **
14375959-C-A 12255255-C-A **
14025426-C-A 11904720-C-A **
14253176-A-T 12132470-A-T **
13958754-T-C 11838048-T-C **
14558018-A-T 12446219-A-T **
19438507-C-A 17326627-C-A **
14788631-C-A 12676702-C-A **
15980054-A-T 13868174-A-T **
17032326-G-C 14920446-G-C **
16711340-C-A 14599460-C-A **
16703299-G-T 14591419-G-T **
16484108-TC-A 14372228-TC-A **
16086033-C-A 13974153-C-A **
16057362-C-A 13945482-C-A **
16003004-C-A 13891124-C-A **
13813590-T-C 11692884-T-C **
15133200-C-A 13021287-C-A **
15911690-C-A 13799810-C-A **
15798284-C-A 13686404-C-A **
15677807-T-G 13565927-T-G **
15656673-G-A 13544793-G-A **
15595095-C-A 13483215-C-A **
15342343-G-A 13230462-G-A **
15258282-C-A 13146366-C-A **
15151496-C-A 13039583-C-A **
13845540-C-T 11724834-C-T **
9434955-T-C 9597346-T-C **
13662223-C-G 11506547-C-G **
7209819-G-A 7341778-G-A **
8852241-C-A 8984200-C-A **
8751640-T-A 8883599-T-A **
8720142-G-A 8852101-G-A **
8073252-A-G 8205211-A-G **
7663026-A-G 7794985-A-G **
7590402-G-T 7722361-G-T **
7288170-T-G 7420129-T-G **
6891886-A-C 7023845-A-C **
9094310-G-A 9256701-G-A **
6848036-C-A 6979995-C-A **
6825356-G-T 6957315-G-T **
6576863-C-A 6708822-C-A **
6281915-A-T 6413874-A-T IR3_Dst **
6148750-A-C 6280709-A-C IR3_Dst **
5861132-ACAATT-A 5993091-ACAATT-A **
5459323-C-A 5591282-C-A **
9057020-T-C **
9511330-G-A 9673721-G-A **
13475156-C-A 11319480-C-A **
11014463-A-AC **
13457786-GATTCC-G 11302110-GATTCC-G 4×ATTCC**
13315720-C-T 11160044-C-T **
13296129-C-A 11140453-C-A **
13280192-A-G 11124516-A-G **
13234095-A-C 11078419-A-C **
11031046-T-G **
11014465-TC-T **
10935622-C-T **
9591034-G-A 9753425-G-A IR3_Prx 12×A**
10935585-T-TACACA **
10935522-C-A **
10934810-G-C **
10934763-T-CA **
10850784-C-A **
10801689-T-TCTGAC **
10776682-C-A **
9764278-C-A 9926669-C-A **
17092649-C-A 14980769-C-A **
18898718-C-A 16786838-C-A **
17191356-G-A 15079476-G-A **
23537327-C-A 21375441-C-A **
23831442-T-C 21669556-T-C **
23831434-A-AC 21669548-A-AC **
23831363-G-A 21669477-G-A **
23792466-G-A 21630580-G-A **
23745064-C-A 21583178-C-A **
23623402-T-C 21461516-T-C **
23623398-A-T 21461512-A-T **
23420536-G-A 21258650-G-A **
23831458-G-T 21669572-G-T **
23419067-A-C 21257181-A-C **
23350527-C-A 21188641-C-A **
23121353-GT-G 20959467-GT-G **
23044153-C-A 20882267-C-A **
22634079-C-A 20472193-C-A **
22617028-C-A 20455142-C-A **
22204055-C-A 20042169-C-A **
22122237-G-T 19960351-G-T **
23831453-G-C 21669567-G-C **
24666271-A-G 22520124-A-G P3_b2 **
21799442-C-A 19637556-C-A **
13453238-C-A 11297562-C-A **
28370130-A-G 26223983-A-G P1_gr2 **
22950138-G-T 20788252-G-T **
22591371-T-C 20429485-T-C **
17196643-A-C 15084763-A-C **
13484105-A-C 11328429-A-C **
13484095-A-T 11328419-A-T **
13484076-G-T 11328400-G-T **
13484065-A-G 11328389-A-G **
6174002-T-G 6305961-T-G IR3_Dst **
24870808-A-C 22724661-A-C P3_b2 **
56834563-C-T **
56832350-C-A **
28760940-G-T 26614793-G-T **
28601002-GT-G 26454855-GT-G **
28581763-C-A 26435616-C-A **
28492191-C-CAA 26346044-C-CAA 10×A**
28095950-T-G 25949803-T-G P1_Y2 **
25651673-C-T 23505526-C-T P1_b3 **
22020635-C-A 19858749-C-A **
21532339-C-A 19370453-C-A **
17283073-A-T 15171193-A-T **
17860227-C-A 15748347-C-A **
18663353-G-A 16551473-G-A **
18387210-T-C 16275330-T-C P6_Gap **
18263549-A-G 16151669-A-G **
18241740-T-C 16129860-T-C **
18088890-G-A 15977010-G-A **
18053401-G-A 15941521-G-A **
17923706-AGAAAAG-A 15811826-AGAAAAG-A **
17864362-G-A 15752482-G-A **
17822135-C-A 15710255-C-A **
18873067-T-A 16761187-T-A **
17760453-A-G 15648573-A-G **
17673336-C-A 15561456-C-A **
17669646-C-A 15557766-C-A **
17654148-CT-C 15542268-CT-C **
17637084-G-A 15525204-G-A **
17572270-C-A 15460390-C-A **
17426244-G-T 15314364-G-T **
17310993-A-G 15199113-A-G **
18694740-C-A 16582860-C-A **
18980976-C-A 16869096-C-A **
21462463-C-A 19300577-C-A **
20295859-G-T 18133973-G-T P5_Dst **
21400002-G-A 19238116-G-A **
21382386-C-A 19220500-C-A **
21317076-A-G 19155190-A-G **
21189403-A-G 19027517-A-G **
21084351-A-T 18922465-A-T **
20989112-C-CTAAG 18827226-C-CTAAG P4_Dst **
20809934-C-A 18648048-C-A P4_Gap **
20447469-T-G 18285583-T-G P5_Dst **
20295855-G-T 18133969-G-T P5_Dst **
18989788-C-A 16877908-C-A **
19910923-A-G 17799043-A-G P5_Prx **
19829503-C-A 17717623-C-A P5_Prx **
19527976-C-A 17416096-C-A **
19509294-C-A 17397414-C-A **
19451833-A-T 17339953-A-T **
19431624-C-A 17319744-C-A **
19389637-G-A 17277757-G-A FGC7335 **
19260469-T-C 17148589-T-C **
4929512-C-T 5061471-C-T **
7825523-C-A 7957482-C-A **
4687780-TA-T 4819739-TA-T **
18942300-C-A 16830420-C-A **
4568424-G-T 4700383-G-T **
10808616-C-CTTTCT **
56832132-C-A **
19853730-T-A 17741850-T-A P5_Prx **
14985314-C-A 12873382-C-A **
56830570-C-T **
14506829-C-A 12395034-C-A **
16102018-T-G 13990138-T-G P8_Prx 6×TTTTG**
15387903-C-A 13276023-C-A **
10807098-C-A **
24637481-TG-T 22491334-TG-T P3_t2 **
23831429-G-A 21669543-G-A **
17752067-C-A 15640187-C-A **
14780876-ATT-A 12668946-ATT-A 12×T**
10946708-C-A **
10935573-A-T **
7364397-C-A 7496356-C-A **
7239697-C-A 7371656-C-A **
27583278-G-T 25437131-G-T P1_Y2 **
19130712-C-A 17018832-C-A **
19129602-C-A 17017722-C-A **
13453204-C-A 11297528-C-A **
10935523-T-G **
14464708-CT-C 12343981-CT-C 9×T**
11014346-C-T **
13489766-A-T 11334090-A-T **
4898114-C-A 5030073-C-A **
21200997-C-A 19039111-C-A **
13484081-A-C 11328405-A-C **
14784872-A-T 12672942-A-T 18×T**
22995884-C-A 20833998-C-A **
14071354-C-CTT 11950648-C-CTT 25×T**
22703595-CAAAAAA-C 20541709-CAAAAAA-C 30×A**
21464419-C-A 19302533-C-A **
23045470-TC-T 20883584-TC-T **
15433041-C-A 13321161-C-A **
21709215-A-T 19547329-A-T **
5870115-C-A 6002074-C-A **
18090094-C-A 15978214-C-A FT37366 **
24267255-AAT-A 22121108-AAT-A P3_b1 **
21391671-C-A 19229785-C-A **
10816582-G-T **
13466928-AAG-A 11311252-AAG-A **
24409376-G-T 22263229-G-T **
23127979-C-A 20966093-C-A **
23831457-C-G 21669571-C-G **
13465890-C-A 11310214-C-A **
27883510-C-A 25737363-C-A P1_Y2 **
14181347-G-T 12060641-G-T FGC58573 **
10964823-A-T **
10964803-A-T **
18425173-C-A 16313293-C-A P6_Gap **
7764453-A-AT 7896412-A-AT 9×T**
13318027-C-A 11162351-C-A **
4908175-CAAA-C 5040134-CAAA-C 17×A**
13489410-T-C 11333734-T-C **
13488942-G-T 11333266-G-T **
58978478-A-C 56832331-A-C **
13469013-G-A 11313337-G-A **
15604354-CAAAAAA-C 13492474-CAAAAAA-C 20×A**
13469066-T-G 11313390-T-G **
22441922-G-A 20280036-G-A BY47964 DYZ19 ****
8170496-G-A 8302455-G-A Z25915 F14313 **
14025608-A-AAGAG 11904902-A-AAGAG **
58976682-CATTCTGCTGA-C 56830535-CATTCTGCTGA-C **
17079242-C-A 14967362-C-A **
13489412-C-A 11333736-C-A **
10926560-T-TCATTC **
20669306-C-T 18507420-C-T P4_Prx **
56827512-C-A **
11015030-C-A **
13469084-T-C 11313408-T-C **
28640447-C-A 26494300-C-A **
11014511-C-T **
16354867-G-T 14242987-G-T **
27497031-A-T 25350884-A-T P1_Y2 **
23272226-C-A 21110340-C-A **
13478405-C-G 11322729-C-G **
17036826-C-A 14924946-C-A **
13478400-A-T 11322724-A-T **
10801647-G-T **
18856249-C-A 16744369-C-A **
13218662-C-A 11062986-C-A **
22079822-C-A 19917936-C-A **
11014476-C-G **
56832972-T-TCCATTCCATC **
13489416-G-T 11333740-G-T **
18923342-GTTTT-G 16811462-GTTTT-G 18×T**
14607658-G-T 12495860-G-T **
56849042-A-G **
8020240-AAAAG-A 8152199-AAAAG-A **
28784418-A-C 26638271-A-C **
10807074-A-ACTCCC **
16736875-C-A 14624995-C-A **
24874403-C-A 22728256-C-A g1 **
20241133-T-G 18079247-T-G P5_Dst **
6384640-C-A 6516599-C-A **
18670200-T-G 16558320-T-G **
18670187-T-C 16558307-T-C **
15484269-C-A 13372389-C-A **
13253903-C-A 11098227-C-A **
23831405-C-A 21669519-C-A **
21361845-C-A 19199959-C-A **
9386159-C-A 9548550-C-A **
14294342-G-A 12173636-G-A 13×A**
15683818-CA-C 13571938-CA-C **
21990482-C-A 19828596-C-A **
23465766-G-T 21303880-G-T **
10807091-T-G **
22028828-C-A 19866942-C-A **
11656418-C-A **
2717174-C-A 2849133-C-A **
4568359-G-A 4700318-G-A **
4567642-G-A 4699601-G-A **
3990525-G-A 4122484-G-A **
3048197-T-A 3180156-T-A **
2912652-G-T 3044611-G-T **
2818022-A-T 2949981-A-T **
2740521-C-A 2872480-C-A **
2702139-C-A 2834098-C-A **
7009224-C-A 7141183-C-A **
2701929-C-A 2833888-C-A **
13489767-C-T 11334091-C-T **
56829426-A-T **
10022957-C-A 10185348-C-A **
23831422-C-T 21669536-C-T **
21408219-C-A 19246333-C-A **
16217389-AT-A 14105509-AT-A 10×T**
15280184-C-A 13168283-C-A **
10935571-C-A **
10668360-C-T **
2767758-C-A 2899717-C-A **
28521214-C-A 26375067-C-A **
6426941-C-A 6558900-C-A **
15712365-C-A 13600485-C-A **
24458693-C-A 22312546-C-A **
13469071-A-G 11313395-A-G **
17095253-C-A 14983373-C-A **
21584165-G-A 19422279-G-A **
10934791-G-C **
28482976-G-A 26336829-G-A **
22088884-C-A 19926998-C-A **
17157522-C-A 15045642-C-A **
16868752-T-C 14756872-T-C **
13902215-C-A 11781509-C-A **
18670179-T-C 16558299-T-C **
19408455-G-GT 17296575-G-GT 9×T***
7854389-C-A 7986348-C-A ***
56829463-T-G ***
56881223-A-C ***
13477279-C-A 11321603-C-A ***
12865784-CTTT-C,CT 15×T***
22783192-C-A 20621306-C-A ***
15592686-C-A 13480806-C-A ***
13478422-C-T 11322746-C-T ***
28761108-G-T 26614961-G-T ***
2803364-C-A 2935323-C-A ***
17318651-C-A 15206771-C-A ***
16627458-C-A 14515578-C-A ***
19449428-GAAAAAA-G 17337548-GAAAAAA-G 23×A***
24435807-T-C 22289660-T-C ***
24381937-A-AG 22235790-A-AG ***
23992692-C-A 21846545-C-A ***
3481522-A-AC 3613481-A-AC ***
2804009-GA-G 2935968-GA-G ***
6952417-C-A 7084376-C-A ***
16283441-T-C 14171561-T-C ***
9972535-G-A 10134926-G-A ***
16051006-CTTTCTT-C 13939126-CTTTCTT-C ***
26730209-G-GA 24584062-G-GA P1_g2 ***
23346042-A-T 21184156-A-T ***
22885133-T-TTA 20723247-T-TTA 10×TA***
3443607-A-G 3575566-A-G ***
22548098-A-C 20386212-A-C ***
21589258-C-G 19427372-C-G ***
5039469-G-T 5171428-G-T ***
18058759-G-T 15946879-G-T ***
16240068-T-C 14128188-T-C ***
15945679-C-A 13833799-C-A ***
16710763-GTA-G,GTATA 14598883-GTA-G,GTATA 14×TA***
59027271-C-T 56881124-C-T ***
6806660-C-A 6938619-C-A ***
14088662-C-A 11967956-C-A ***
19513143-CTTTT-C 17401263-CTTTT-C 20×T***
15899239-C-A 13787359-C-A ***
18740841-T-A 16628961-T-A ***
13489728-T-A 11334052-T-A ***
13470945-C-A 11315269-C-A ***
3453531-A-G 3585490-A-G ***
9666654-G-T 9829045-G-T IR3_Prx ***
13451479-C-A 11295803-C-A ***
7561887-AT-A 7693846-AT-A 10×T***
14981520-C-A 12869596-C-A ***
13808750-G-T 11688044-G-T ***
4049372-TAAA-T 4181331-TAAA-T 16×A***
18942922-C-A 16831042-C-A ***
21639801-T-C 19477915-T-C ***
23311571-A-ATT 21149685-A-ATT 15×T***
18195394-C-A 16083514-C-A ***
21360185-C-A 19198299-C-A ***
13585425-C-A 11429749-C-A ***
7277809-C-A 7409768-C-A ***
18195399-C-A 16083519-C-A ***
5274551-G-GA 5406510-G-GA 9×A***
20959285-G-GT 18797399-G-GT P4_Dst ***
9649472-C-A 9811863-C-A IR3_Prx ***
14357450-C-A 12236745-C-A ***
21883658-C-A 19721772-C-A ***
21238996-C-A 19077110-C-A ***
19565351-C-A 17453471-C-A ***
16909178-C-CTT 14797298-C-CTT 16×T***
13253396-G-GTT,GTTT 11097720-G-GTT,GTTT 12×T***
4375565-T-G 4507524-T-G ***
18713681-C-A 16601801-C-A ***
14342587-C-A 12221882-C-A ***
19256503-C-A 17144623-C-A ***
19200081-C-A 17088201-C-A ***
19066460-CT-C 16954580-CT-C ***
24366716-T-TA 22220569-T-TA 9×A***
21858590-C-A 19696704-C-A ***
17969221-C-A 15857341-C-A ***
9968339-GTT-G,GTTTT 10130730-GTT-G,GTTTT 15×T***
15579637-C-A 13467757-C-A ***
56881154-A-AAAAAGC 4×AAAAC***
10015808-G-A 10178199-G-A ***
13869198-T-G 11748492-T-G ***
23732232-CAAA-C,CAA 21570346-CAAA-C,CAA 17×A***
23651240-C-A 21489354-C-A ***
14846626-C-A 12734692-C-A ***
14031748-TTC-T,TTCTTTCTTTC 11911042-TTC-T,TTCTTTCTTTC ***
14836800-C-A 12724867-C-A ***
14807559-C-A 12695630-C-A ***
23386703-C-A 21224817-C-A ***
3671925-A-G 3803884-A-G ***
9880556-C-A 10042947-C-A ***
22082915-C-A 19921029-C-A ***
23059214-C-A 20897328-C-A ***
23010489-G-A 20848603-G-A ***
22525954-A-AT 20364068-A-AT Y87179 9×T***
22820731-C-A 20658845-C-A ***
22819287-C-A 20657401-C-A ***
22661493-ATGTGTGTGTGTG-A,ATGTGTGTGTG 20499607-ATGTGTGTGTGTG-A,ATGTGTGTGTG 26×TG***
16868631-G-GTA 14756751-G-GTA ***
16076219-C-CA 13964339-C-CA 8×A***
22562230-C-A 20400344-C-A ***
14731258-A-G 12619326-A-G ***
14702300-C-A 12590366-C-A ***
22104037-T-C 19942151-T-C ***
16940889-C-A 14829009-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: MK11831857162870856727076694
Kit: MK118311496952293650118318111
Used in age calculations1496952293650118318111
Counts of SNPs44
Variant counts last updated 2019-08-08 22:10:54.



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