Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > A21822 > S8183 > Y4356 > Y4354 > S8172

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
IN30992
22232113-G-T 20070227-G-T DYZ19 A*
13448660-A-ATGCC 11292984-A-ATGCC A*
22313446-G-A 20151560-G-A DYZ19 A*
26122230-A-G 23976083-A-G P1_Y1 A*
19840159-T-C 17728279-T-C P5_Prx A*
28808425-A-C 26662278-A-C A*
19908043-T-C 17796163-T-C P5_Prx A*
16808769-C-T 14696889-C-T PF809 M11773 YY+
16945902-A-G 14834022-A-G BY191040 YY+
22160645-G-A 19998759-G-A BY191894 YY+
14650070-A-G 12538135-A-G BY190597 YY+
8471004-T-C 8602963-T-C BY190144 YY+
17471016-A-G 15359136-A-G BY191151 YY+
6349006-T-C 6480965-T-C BY189700 +
22812618-G-A 20650732-G-A YY+
23414925-C-T 21253039-C-T BY192189 YY+
21254054-C-A 19092168-C-A BY191667 YY+
17847241-G-T 15735361-G-T BY191243 YY+
7260835-G-T 7392794-G-T BY189825 YY+
14918709-A-C 12806776-A-C YY+
17983214-G-A 15871334-G-A BY191291 Y+
22184510-C-T 20022624-C-T BY191901 YY+
9809361-A-G 9971752-A-G BY190379 YY+
21845600-C-CA 19683714-C-CA 9×A+
18787316-T-G 16675436-T-G BY191425 YY+
7180234-C-T 7312193-C-T Z19461 YY+
9049282-G-A 9211673-G-A BY190283 Y+
9476384-A-G 9638775-A-G FGC17601 +
22300373-C-T 20138487-C-T DYZ19 *
22254813-A-T 20092927-A-T DYZ19 *
22422650-TC-T 20260764-TC-T DYZ19 *
15197562-C-A 13085648-C-A **
16292729-A-G 14180849-A-G **
16292726-G-C 14180846-G-C **
15027735-T-G 12915823-T-G **
15113536-C-A 13001623-C-A **
15157627-G-A 13045714-G-A **
15179178-G-A 13067264-G-A **
16292717-C-G 14180837-C-G **
16292657-A-C 14180777-A-C **
15211034-G-C 13099120-G-C FT93207 **
15931591-C-T 13819711-C-T **
16095642-G-A 13983762-G-A **
16034489-T-G 13922609-T-G **
15600046-G-A 13488166-G-A **
16034455-A-C 13922575-A-C **
15650008-C-A 13538128-C-A **
16007155-A-C 13895275-A-C **
15687729-G-T 13575849-G-T **
15898973-C-T 13787093-C-T **
14784920-C-A 12672990-C-A **
14008937-GCA-G 11888231-GCA-G **
14464280-C-A 12343553-C-A **
13477601-C-A 11321925-C-A **
9123578-G-T **
8980039-C-T 9142430-C-T **
9329148-A-G 9491539-A-G **
9329152-G-A 9491543-G-A **
10791277-A-G **
10793846-C-A **
10813526-C-A **
11014428-ATTCAATT-A **
11014436-C-CCG **
11014460-T-C **
13456861-C-A 11301185-C-A **
13487831-C-A 11332155-C-A **
14415644-A-C 12294941-A-C **
13596584-G-A 11440908-G-A **
13710391-G-T 11554715-G-T **
13846694-CGAATG-C 11725988-CGAATG-C **
13940659-C-G 11819953-C-G FT93141 **
13997903-GGGAT-G 11877197-GGGAT-G **
16292767-G-A 14180887-G-A **
14027414-A-G 11906708-A-G **
14151862-A-G 12031156-A-G FT93158 **
14241673-C-A 12120967-C-A **
14347761-C-A 12227056-C-A **
14361871-C-A 12241166-C-A **
14369596-G-T 12248892-G-T **
16292734-G-A 14180854-G-A **
17006370-C-A 14894490-C-A **
16379072-G-T 14267192-G-T **
22651370-C-A 20489484-C-A **
20295205-T-C 18133319-T-C P5_Dst **
20582536-A-AATG 18420650-A-AATG P5_Dst **
20778472-A-T 18616586-A-T P4_Prx **
21201194-C-A 19039308-C-A **
21248440-C-A 19086554-C-A **
21403449-A-G 19241563-A-G FT93377 **
21427812-C-A 19265926-C-A **
21796456-C-A 19634570-C-A **
22103392-A-T 19941506-A-T FT93402 **
22137767-C-A 19975881-C-A **
22155501-A-G 19993615-A-G **
23447176-C-A 21285290-C-A **
19551688-C-A 17439808-C-A **
24378725-C-A 22232578-C-A **
26012908-A-G 23866761-A-G P1_Y1 **
27497076-T-TA 25350929-T-TA P1_Y2 **
27637333-G-T 25491186-G-T P1_Y2 **
28500201-A-G 26354054-A-G **
28537599-C-A 26391452-C-A **
28770435-T-A 26624288-T-A **
56825975-G-C **
56825977-T-G **
56830932-G-T **
56832423-G-T **
56832435-G-A **
19562671-C-A 17450791-C-A **
19539639-A-G 17427759-A-G **
16421094-T-C 14309214-T-C **
17632329-A-C 15520449-A-C **
16423827-G-A 14311947-G-A **
16522773-A-T 14410893-A-T **
16555076-C-A 14443196-C-A **
16593625-C-A 14481745-C-A **
16675911-C-A 14564031-C-A **
16702235-C-G 14590355-C-G **
16707094-C-T 14595214-C-T **
16991761-T-A 14879881-T-A FT93271 **
7656678-C-A 7788637-C-A **
17445549-A-T 15333669-A-T **
17466980-G-T 15355100-G-T **
17514186-G-A 15402306-G-A **
17718544-C-A 15606664-C-A **
19529049-AAAATTTTATTTAAT-A 17417169-AAAATTTTATTTAAT-A **
18175057-A-C 16063177-A-C FT93326 **
18187182-G-T 16075302-G-T **
18690183-C-A 16578303-C-A **
18731558-C-A 16619678-C-A **
18780227-C-A 16668347-C-A **
18780424-A-G 16668544-A-G **
18794324-C-A 16682444-C-A **
18803879-C-A 16691999-C-A **
18928532-C-A 16816652-C-A **
19000428-T-C 16888548-T-C **
19071038-T-C 16959158-T-C **
19416504-C-A 17304624-C-A **
7737051-G-C 7869010-G-C **
9012940-G-T 9175331-G-T **
56832466-C-T **
22236912-A-T 20075026-A-T DYZ19 **
56834881-T-G **
5926854-G-T 6058813-G-T **
16292658-G-C 14180778-G-C **
16292689-G-A 14180809-G-A **
17137130-C-A 15025250-C-A **
13228197-C-A 11072521-C-A **
2901417-G-A 3033376-G-A **
16292668-C-T 14180788-C-T **
16146524-A-C 14034644-A-C P8_Dst **
14196323-C-A 12075617-C-A **
17928684-C-A 15816804-C-A **
13710392-G-C 11554716-G-C **
23609924-C-A 21448038-C-A **
18703257-C-A 16591377-C-A **
13309818-C-A 11154142-C-A **
14007437-C-A 11886731-C-A **
17115141-C-A 15003261-C-A **
21990807-GC-G 19828921-GC-G **
23372033-A-G 21210147-A-G **
28507284-C-A 26361137-C-A **
14152290-C-A 12031584-C-A **
6784659-C-A 6916618-C-A **
16292752-AT-A 14180872-AT-A **
7333106-C-A 7465065-C-A **
13483386-A-G 11327710-A-G **
7564247-T-G 7696206-T-G **
8714946-C-A 8846905-C-A **
15815336-CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-C 13703456-CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-C 57×A**
5911246-T-A 6043205-T-A **
13885319-C-A 11764613-C-A **
15324106-C-T 13212224-C-T **
16298462-C-A 14186582-C-A **
56848822-C-T **
16244885-C-A 14133005-C-A **
21990400-T-TATA 19828514-T-TATA 6×ATA**
8094559-A-G 8226518-A-G BY69889 **
7274995-C-A 7406954-C-A **
16033703-C-A 13921823-C-A **
13194478-C-A 11038802-C-A **
7021997-C-A 7153956-C-A **
13869160-GA-G 11748454-GA-G **
16577646-C-A 14465766-C-A **
7160894-CTTTT-C 7292853-CTTTT-C 16×T**
15360537-C-A 13248657-C-A **
3385374-C-A 3517333-C-A **
2859124-C-A 2991083-C-A **
23176797-G-GA 21014911-G-GA **
56832502-C-T **
10956583-C-A **
11643752-T-G **
13938585-C-A 11817879-C-A **
13871919-C-A 11751213-C-A **
14422772-G-A 12302047-G-A **
56825982-T-A **
4604915-C-A 4736874-C-A **
11022939-C-A **
3267461-C-A 3399420-C-A **
20078760-A-AG 17966880-A-AG P5_Dst **
6512303-T-G 6644262-T-G **
16929875-C-A 14817995-C-A **
18718989-C-A 16607109-C-A **
56835862-TCCGTG-T **
11036072-T-A **
5905494-C-A 6037453-C-A **
10793866-C-A **
15011565-C-A 12899653-C-A **
17672991-C-A 15561111-C-A **
6427177-G-T 6559136-G-T **
3271458-T-C 3403417-T-C **
3950804-T-C 4082763-T-C **
4063867-C-A 4195826-C-A **
15679955-C-A 13568075-C-A **
4104414-GTT-G 4236373-GTT-G 11×T**
4671676-T-C 4803635-T-C **
4703718-C-A 4835677-C-A **
4901909-C-A 5033868-C-A **
5448692-T-C 5580651-T-C **
5735607-C-A 5867566-C-A **
5861237-C-A 5993196-C-A **
5923993-C-A 6055952-C-A **
6303407-C-CA 6435366-C-CA IR3_Dst **
6427510-C-A 6559469-C-A **
3158916-C-A 3290875-C-A **
6449411-C-A 6581370-C-A **
6593583-C-A 6725542-C-A **
6613948-G-T 6745907-G-T **
6763939-T-G 6895898-T-G **
6917828-AATTGTAAACCC-A 7049787-AATTGTAAACCC-A **
6929673-G-A 7061632-G-A **
7053086-TGCCTTCCC-T 7185045-TGCCTTCCC-T **
7199954-T-C 7331913-T-C **
7222015-G-A 7353974-G-A **
7222349-A-C 7354308-A-C **
7313530-C-A 7445489-C-A **
7334211-C-A 7466170-C-A **
7471068-T-G 7603027-T-G IR1_L **
3180280-G-T 3312239-G-T **
4081116-C-A 4213075-C-A **
15699986-C-A 13588106-C-A **
28802754-G-T 26656607-G-T **
10987883-C-G **
22035969-TA-T 19874083-TA-T 8×A**
15604270-C-A 13492390-C-A **
2975492-C-A 3107451-C-A **
14326497-C-A 12205791-C-A **
4861871-C-A 4993830-C-A **
17963561-C-A 15851681-C-A **
28645706-C-A 26499559-C-A **
15402353-A-C 13290473-A-C **
28773908-C-A 26627761-C-A **
10660999-C-G **
15741845-G-T 13629965-G-T **
5335559-C-A 5467518-C-A **
6930645-T-A 7062604-T-A **
2689736-C-A 2821695-C-A **
13456511-C-A 11300835-C-A **
2856624-G-A 2988583-G-A **
7309856-C-A 7441815-C-A **
56826699-A-AG,G ***
23419476-C-A 21257590-C-A ***
13470443-G-C 11314767-G-C ***
16824104-C-A 14712224-C-A ***
7137332-C-A 7269291-C-A ***
21687983-C-G 19526097-C-G ***
9934331-C-A 10096722-C-A ***
9386906-T-A 9549297-T-A ***
11014375-T-G ***
5911040-A-AT 6042999-A-AT 9×T***
16160893-G-C 14049013-G-C P8_Dst ***
23954413-C-A 21808266-C-A ***
12730473-ATTTTT-A,ATTTTTT 21×T***
18267377-A-AT 16155497-A-AT 10×T***
3965513-T-C 4097472-T-C ***
19486859-CTT-C,CTTTTT 17374979-CTT-C,CTTTTT 16×T***
14614409-C-A 12502607-C-A ***
18907926-C-A 16796046-C-A ***
13226650-C-A 11070974-C-A ***
14422094-C-A 12301369-C-A ***
17655003-C-A 15543123-C-A ***
21238989-C-A 19077103-C-A ***
6829200-G-A 6961159-G-A BY61562 ***
14025303-C-A 11904597-C-A ***
22107634-C-CGTGT 19945748-C-CGTGT 17×GT***
15761261-C-A 13649381-C-A ***
4841571-G-T 4973530-G-T ***
13602927-G-A 11447251-G-A ***
13479056-C-G 11323380-C-G ***
22730761-C-A 20568875-C-A ***
7622774-C-A 7754733-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN30992919798875901987556834
Used in age calculations919798875901987556834
Counts of SNPs1717
Variant counts last updated 2019-11-11 02:46:40.



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