Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
N259352
22218224-G-A 20056338-G-A DYZ19 A+
19800115-A-C 17688235-A-C ZS1879 P5_Prx A+
22265445-G-A 20103559-G-A DYZ19 A*
22286106-G-A 20124220-G-A DYZ19 A*
20379883-C-G 18217997-C-G P5_Dst A*
25894446-A-G 23748299-A-G P1_Y1 A*
25875379-C-T 23729232-C-T P1_Y1 A*
24252914-A-G 22106767-A-G P3_b1 A*
16118813-G-A 14006933-G-A P8_Prx A*
22224437-C-A 20062551-C-A DYZ19 A*
8184219-A-G 8316178-A-G BY186595 YY+
8484480-G-T 8616439-G-T YY+
23134867-A-G 20972981-A-G BY188553 YY+
8182761-A-T 8314720-A-T BY186594 YY+
22707818-A-G 20545932-A-G BY188463 YY+
7694250-T-G 7826209-T-G BY186472 YY+
22608535-T-C 20446649-T-C BY188443 YY+
22471602-G-T 20309716-G-T DYZ19 +
9877606-A-G 10039997-A-G BY186926 YY+
23608357-G-A 21446471-G-A BY188635 YY+
21485351-C-T 19323465-C-T BY188188 YY+
21424332-A-G 19262446-A-G BY188174 YY+
19119182-C-A 17007302-C-A BY187984 YY+
18840165-T-C 16728285-T-C BY159361 YY+
18692298-G-T 16580418-G-T BY187882 YY+
17644534-G-T 15532654-G-T BY187676 YY+
14170303-A-G 12049597-A-G BY187033 YY+
16508655-G-C 14396775-G-C BY187464 YY+
16456805-G-T 14344925-G-T BY187456 YY+
14398712-A-T 12278008-A-T BY187087 YY+
7518847-C-T 7650806-C-T BY186409 Y+
16796709-A-T 14684829-A-T BY187511 YY+
7348358-C-T 7480317-C-T BY186387 YY+
24508773-G-A 22362626-G-A BY188725 +
2887959-C-G 3019918-C-G YY+
19478026-C-T 17366146-C-T CTS10482 YY+
22725529-T-C 20563643-T-C BY140332 YY+
23455615-A-C 21293729-A-C FGC51445 YY+
15486297-G-T 13374417-G-T BY187281 YY+
15964086-C-T 13852206-C-T BY105162 YY+
28797611-AA-A,AT 26651464-AA-A,AT *
13489704-C-T 11334028-C-T *
3844412-C-A 3976371-C-A **
11015774-C-T **
11015782-C-T **
11020912-C-T **
11020924-C-G **
13256171-C-A 11100495-C-A **
13258453-C-T 11102777-C-T **
13446634-C-T 11290958-C-T **
3045972-C-A 3177931-C-A **
13845291-C-A 11724585-C-A **
14147229-T-A 12026523-T-A **
7078414-G-T 7210373-G-T **
7306341-G-A 7438300-G-A **
10999915-A-C **
2817916-C-A 2949875-C-A **
14395505-T-C 12274801-T-C **
2678004-T-C 2809963-T-C **
23034475-A-G 20872589-A-G **
14585624-A-G 12473824-A-G **
14711706-C-A 12599773-C-A **
14764788-C-G 12652857-C-G **
14995728-C-A 12883813-C-A **
15103704-A-C 12991792-A-C **
15106957-G-C 12995044-G-C **
15146544-TATTATCC-T 13034631-TATTATCC-T **
18982547-C-CAA 16870667-C-CAA 39×A**
7780660-T-C 7912619-T-C **
10995884-C-CATTAA **
10664141-T-G **
8217936-A-C 8349895-A-C **
6917122-C-T 7049081-C-T **
5675544-C-T 5807503-C-T **
8661822-A-G 8793781-A-G **
5527635-C-A 5659594-C-A **
5190077-C-A 5322036-C-A **
5171613-A-C 5303572-A-C **
4999914-C-T 5131873-C-T **
4976765-G-T 5108724-G-T **
8030030-TAAAAAAAAAAAA-T 8161989-TAAAAAAAAAAAA-T 26×A**
10033129-G-A 10195520-G-A **
4874585-G-T 5006544-G-T **
6727640-G-T 6859599-G-T **
10673118-C-A **
10759540-T-G **
10789337-T-A **
10789351-A-AC **
10789353-TC-T **
10886850-C-A **
4443021-G-A 4574980-G-A **
10919191-A-G **
7362704-C-A 7494663-C-A **
10964821-GGAC-T **
10989711-C-A **
10995837-T-G **
10921198-T-G **
2795557-TTG-T 2927516-TTG-T **
15477664-C-A 13365784-C-A **
24373241-C-A 22227094-C-A **
22662480-C-A 20500594-C-A **
22833904-T-C 20672018-T-C **
22857966-A-G 20696080-A-G 8×T**
23034438-C-T 20872552-C-T **
23142844-T-A 20980958-T-A **
23186206-G-A 21024320-G-A **
23198731-A-C 21036845-A-C **
23391656-A-C 21229770-A-C **
23391658-C-T 21229772-C-T **
23391659-A-G 21229773-A-G **
23625460-G-T 21463574-G-T **
23881812-C-A 21719926-C-A **
23997144-C-A 21850997-C-A **
24278333-A-AGG 22132186-A-AGG P3_b1 **
24402022-C-A 22255875-C-A **
22167253-A-C 20005367-A-C **
56829970-C-A **
36040-T-C **
56839052-C-G **
56839045-C-G **
56839007-T-G **
56836320-T-TTCCAGTCCTTTCCAA **
56836314-T-C **
28804426-A-C 26658279-A-C **
27546762-G-TTT 25400615-G-TTT P1_Y2 **
28699990-C-T 26553843-C-T **
28688346-G-A 26542199-G-A **
28687716-A-C 26541569-A-C **
28548806-C-A 26402659-C-A **
28461667-C-A 26315520-C-A **
27976990-GAAA-G 25830843-GAAA-G P1_Y2 10×A**
22201178-C-A 20039292-C-A **
22150059-G-A 19988173-G-A **
15484053-C-A 13372173-C-A **
17798969-G-A 15687089-G-A **
15497154-A-G 13385274-A-G **
15606722-C-A 13494842-C-A **
15623250-C-A 13511370-C-A **
15775847-C-A 13663967-C-A **
15923946-T-G 13812066-T-G **
15946715-G-A 13834835-G-A **
16070081-T-G 13958201-T-G **
16270863-G-C 14158983-G-C **
16423553-C-A 14311673-C-A **
3967018-G-T 4098977-G-T **
17144073-TAA-T 15032193-TAA-T **
17146667-C-A 15034787-C-A **
17714561-G-T 15602681-G-T **
17774057-C-A 15662177-C-A **
17864121-A-G 15752241-A-G **
21244966-C-A 19083080-C-A **
19527418-C-A 17415538-C-A **
21201061-G-A 19039175-G-A **
21163418-C-A 19001532-C-A **
20669216-T-A 18507330-T-A P4_Prx **
20458860-A-C 18296974-A-C P5_Dst **
20434747-G-C 18272861-G-C P5_Dst **
20046883-C-T 17935003-C-T P5_Prx **
19494403-A-T 17382523-A-T **
17918682-C-T 15806802-C-T **
19361210-T-G 17249330-T-G **
19253748-A-G 17141868-A-G **
19081364-T-C 16969484-T-C **
18853980-T-C 16742100-T-C **
18401796-C-A 16289916-C-A P6_Gap **
18263635-C-CCT 16151755-C-CCT **
19270527-A-G 17158647-A-G **
3985902-G-A 4117861-G-A **
10744314-T-C **
10744304-C-G **
10992311-A-G **
13488855-G-C 11333179-G-C **
14107637-C-A 11986931-C-A **
16030015-C-A 13918135-C-A **
11020911-T-A **
7252293-A-G 7384252-A-G **
23625489-G-T 21463603-G-T **
10744292-C-T **
10992354-C-A **
10744280-T-C **
19088417-T-C 16976537-T-C **
7252301-C-CT 7384260-C-CT **
8673379-C-A 8805338-C-A **
10860115-T-A **
9652159-TA-T 9814550-TA-T IR3_Prx **
23421043-ATTTTTT-A 21259157-ATTTTTT-A 22×T**
10992317-T-A **
28514641-C-A 26368494-C-A **
22766651-C-A 20604765-C-A **
10972296-T-G **
10747126-G-T **
18953042-GGGGA-G 16841162-GGGGA-G 4×GGGA**
13446629-C-A 11290953-C-A **
10787357-T-C **
5186472-G-T 5318431-G-T **
10964783-A-T **
5266992-C-A 5398951-C-A **
13446628-T-A 11290952-T-A **
56839084-A-G **
13446610-C-T 11290934-C-T **
10793242-C-T **
9885237-C-A 10047628-C-A **
10995880-T-A **
19146597-TG-T 17034717-TG-T **
4509359-C-A 4641318-C-A **
19529196-C-A 17417316-C-A **
10746573-C-A **
3992300-C-A 4124259-C-A **
10754941-C-G **
9587260-A-C 9749651-A-C IR3_Prx **
10958586-C-G **
10958567-A-ACTC **
10958562-A-T **
17153475-C-A 15041595-C-A **
10987242-C-A **
10987238-AC-A **
19706123-CAT-C 17594243-CAT-C P5_Prx **
4123739-G-A 4255698-G-A **
18753174-G-T 16641294-G-T **
26060220-AT-A 23914073-AT-A P1_Y1 **
58985203-G-T 56839056-G-T **
17147425-TTTTC-T 15035545-TTTTC-T 4×TTTC**
24149099-C-A 22002952-C-A P3_b1 **
58985215-A-G 56839068-A-G **
21837775-G-GA 19675889-G-GA 10×A**
21306590-C-CAA 19144704-C-CAA 27×A**
15742979-G-A 13631099-G-A **
13521121-C-A 11365445-C-A **
10787307-T-C **
11000605-C-A **
15439046-C-A 13327166-C-A **
10773615-C-A **
10744262-C-T **
10964859-T-G **
10744309-T-C **
14607794-G-T 12495996-G-T **
22836651-C-A 20674765-C-A **
10790232-T-A **
28544359-C-A 26398212-C-A **
19270537-CAAAA-C 17158657-CAAAA-C 21×A**
23241973-TTGTA-T 21080087-TTGTA-T **
4389547-C-A 4521506-C-A **
7040011-G-T 7171970-G-T **
10746999-GTTCCA-G **
10987228-A-C **
10987218-A-T **
16590710-A-G 14478830-A-G **
10992985-A-C **
36571-G-C **
14191785-T-C 12071079-T-C **
19246951-C-A 17135071-C-A **
3550569-CAA-C 3682528-CAA-C **
13488845-C-T 11333169-C-T **
13488796-G-A 11333120-G-A **
24047573-G-T 21901426-G-T **
14316308-C-A 12195602-C-A **
13907428-C-A 11786722-C-A **
2784270-C-A 2916229-C-A **
10033852-C-A 10196243-C-A **
13939214-C-A 11818508-C-A **
23625470-T-C 21463584-T-C **
23625467-A-C 21463581-A-C **
10791181-TATTCC-T **
27739908-A-AG 25593761-A-AG P1_Y2 **
10802802-G-T **
13488864-T-A 11333188-T-A **
8481058-AAT-A 8613017-AAT-A **
18037833-A-C 15925953-A-C **
23625479-G-A 21463593-G-A **
10995794-C-T **
17654010-C-CT 15542130-C-CT 8×T**
10862402-C-A **
18738161-C-A 16626281-C-A **
28608552-C-A 26462405-C-A **
16971328-C-A 14859448-C-A **
10973687-A-C **
10997793-C-A **
18020749-C-A 15908869-C-A **
16270939-C-A 14159059-C-A **
10987198-A-ACTC **
23625483-A-T 21463597-A-T **
10794682-GTTCCATTCCA-G **
18752979-C-A 16641099-C-A **
17808122-C-A 15696242-C-A **
19245386-T-G 17133506-T-G **
6757095-T-G 6889054-T-G **
13695482-G-T 11539806-G-T **
10025307-C-A 10187698-C-A **
23625488-T-C 21463602-T-C **
13234846-C-A 11079170-C-A **
22241449-T-A 20079563-T-A DYZ19 **
10987199-T-TAC **
16070755-C-A 13958875-C-A **
17343803-C-A 15231923-C-A **
10791155-G-T **
21163384-C-A 19001498-C-A **
18263619-G-C 16151739-G-C **
13298539-C-A 11142863-C-A **
17144057-C-T 15032177-C-T **
10754972-C-A **
7221500-C-A 7353459-C-A **
23397104-C-A 21235218-C-A **
10754940-T-A **
21189517-C-A 19027631-C-A **
8166738-GC-G 8298697-GC-G **
10988334-T-A **
6244487-AC-A 6376446-AC-A IR3_Dst **
23034431-C-T 20872545-C-T **
10999923-C-A **
8697473-C-A 8829432-C-A **
10934844-A-G ***
6356309-T-C 6488268-T-C ***
14432549-T-G 12311822-T-G ***
14550406-A-G 12438607-A-G ***
10940385-C-A,ATATTGTTT ***
22147198-C-G 19985312-C-G ***
28644077-C-A 26497930-C-A ***
10934837-C-G ***
4416867-CAA-C,CAAA 4548826-CAA-C,CAAA 17×A***
16833284-A-G 14721404-A-G ***
16095626-C-A 13983746-C-A ***
7098902-TAAA-T,TA 7230861-TAAA-T,TA 16×A***
15619806-C-A 13507926-C-A ***
16312068-GAAAA-G 14200188-GAAAA-G 15×A***
15605230-TTA-T 13493350-TTA-T ***
15604458-A-G 13492578-A-G ***
18890882-AT-A,ATT 16779002-AT-A,ATT 17×T***
21503994-ATTTTTT-A 19342108-ATTTTTT-A 19×T***
13453198-C-T 11297522-C-T ***
21455988-C-T 19294102-C-T ***
10934740-C-A ***
14557660-G-T 12445861-G-T ***
17799103-GAGAAATATACCACTTTGCA-G 15687223-GAGAAATATACCACTTTGCA-G ***
10032970-G-A 10195361-G-A ***
21748641-T-C 19586755-T-C ***
14784701-CTTTTT-C 12672771-CTTTTT-C 22×T***
10980656-G-A ***
18106353-GTTTT-G,GTTTTT 15994473-GTTTT-G,GTTTTT 15×T***
13469987-G-A 11314311-G-A ***
17864525-C-A 15752645-C-A ***
13482689-CA-C 11327013-CA-C ***
8135398-C-A 8267357-C-A ***
23061827-G-A 20899941-G-A ***
10934770-C-T ***
13489745-T-A 11334069-T-A ***
13489750-G-C 11334074-G-C ***
13821677-A-G 11700971-A-G ***
13465924-C-A 11310248-C-A ***
21748606-G-T 19586720-G-T ***
17203577-C-T 15091697-C-T ***
17203567-G-A 15091687-G-A ***
22125818-C-A 19963932-C-A ***
18936646-C-A 16824766-C-A ***
10934780-C-T ***
56832336-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: N259352944711077812537722955
Used in age calculations944711077812537722955
Counts of SNPs2827
Variant counts last updated 2019-04-19 15:43:35.



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