Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > Y16252 > BY23333

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
431343
24305272-C-CA 22159125-C-CA P3_t1 21×AA*
26023857-A-G 23877710-A-G P1_Y1 A*
28817809-A-C 26671662-A-C A*
7588310-C-G 7720269-C-G BY186430 YY+
8482555-C-G 8614514-C-G BY186668 YY+
9132802-G-T 9295193-G-T BY186831 Y+
14320565-T-A 12199859-T-A BY187071 YY+
15903087-A-G 13791207-A-G BY187358 YY+
23306830-C-A 21144944-C-A YY+
14320685-G-A 12199979-G-A BY187072 YY+
13448508-A-T 11292832-A-T *
22298518-T-A 20136632-T-A DYZ19 *
13448574-C-G 11292898-C-G *
22281170-G-T 20119284-G-T DYZ19 *
10772495-C-G **
10838400-C-A **
10807300-A-AT **
10807276-C-CCG **
10784438-T-C **
10784434-T-C **
10782463-C-A **
10772494-TCCACA-T **
10772428-T-A **
10772486-C-T **
10759853-T-TC **
10746748-C-T **
10693872-TC-T **
10682521-C-A **
10654383-CT-C **
10033273-C-A 10195664-C-A **
10026103-T-C 10188494-T-C **
9943609-C-A 10106000-C-A **
10884350-T-A **
28535504-T-A 26389357-T-A **
9890260-G-A 10052651-G-A **
13542319-C-A 11386643-C-A **
13866754-G-T 11746048-G-T **
13845528-TTGGAATGGAGTCAAATGGAATGGAA-T 11724822-TTGGAATGGAGTCAAATGGAATGGAA-T **
13801291-A-C 11680585-A-C **
13644078-T-C 11488402-T-C **
13643660-C-A 11487984-C-A **
13628864-C-T 11473188-C-T **
13556920-C-A 11401244-C-A **
13512415-G-T 11356739-G-T **
10931406-T-G **
13479694-T-G 11324018-T-G **
13311859-G-GC 11156183-G-GC **
11029298-T-C **
11021369-C-G **
10996620-C-T **
10989818-C-CTCCAG **
10969045-CCT-C **
10969045-C-G **
9936789-C-A 10099180-C-A **
9025602-C-A 9187993-C-A **
28818022-G-T 26671875-G-T **
4080984-C-T 4212943-C-T **
6001521-T-C 6133480-T-C **
5859311-C-A 5991270-C-A **
5844356-C-A 5976315-C-A **
5586515-T-A 5718474-T-A **
5409961-G-T 5541920-G-T **
4505137-G-A 4637096-G-A **
4328995-C-G 4460954-C-G **
4015574-G-T 4147533-G-T **
6367965-G-T 6499924-G-T **
3875925-A-C 4007884-A-C **
3334306-C-CA 3466265-C-CA **
2980251-C-A 3112210-C-A **
19436672-AAAAGAAAGAAAG-A 17324792-AAAAGAAAGAAAG-A 17×AAAG**
23176799-A-AC 21014913-A-AC 11×GAAG**
23176796-G-A 21014910-G-A **
10807278-AC-A **
10807268-CT-C **
6092167-C-A 6224126-C-A **
6454838-G-A 6586797-G-A **
13927851-C-A 11807145-C-A **
7939652-A-T 8071611-A-T **
8976986-C-T 9139377-C-T **
8723839-A-G 8855798-A-G **
8673941-C-A 8805900-C-A **
56826958-A-G **
8235596-C-A 8367555-C-A **
8075906-T-G 8207865-T-G **
7974692-T-G 8106651-T-G **
7662794-C-A 7794753-C-A **
6475281-A-C 6607240-A-C FT69503 **
7590815-C-T 7722774-C-T **
56831056-C-CCATTCCATTG **
7428210-A-C 7560169-A-C **
7008419-C-A 7140378-C-A **
7008402-C-A 7140361-C-A **
6901201-C-A 7033160-C-A **
6593471-C-A 6725430-C-A **
6491161-C-A 6623120-C-A **
13926795-C-A 11806089-C-A **
14068507-C-A 11947801-C-A **
13963971-C-G 11843265-C-G **
21639072-T-G 19477186-T-G **
22114929-T-TA 19953043-T-TA 8×A**
22077385-T-A 19915499-T-A **
21983883-C-A 19821997-C-A **
21949075-C-A 19787189-C-A **
21821301-C-A 19659415-C-A **
21792655-C-T 19630769-C-T **
21677366-C-A 19515480-C-A **
21152583-G-T 18990697-G-T **
22215177-G-A 20053291-G-A **
20815780-G-A 18653894-G-A P4_Gap **
20760926-C-A 18599040-C-A P4_Prx **
20025391-A-T 17913511-A-T P5_Prx **
20022554-G-T 17910674-G-T P5_Prx **
19839779-T-C 17727899-T-C P5_Prx **
19739788-G-T 17627908-G-T P5_Prx **
19547538-A-T 17435658-A-T **
19532861-C-A 17420981-C-A **
22193213-A-G 20031327-A-G **
22361644-C-A 20199758-C-A DYZ19 **
19517455-T-G 17405575-T-G **
24611941-G-T 22465794-G-T P3_t2 **
27976987-A-C 25830840-A-C P1_Y2 **
27952039-A-G 25805892-A-G P1_Y2 **
27859411-AT-A 25713264-AT-A P1_Y2 **
27838006-T-G 25691859-T-G P1_Y2 **
27603540-A-C 25457393-A-C P1_Y2 **
27579079-A-AG 25432932-A-AG P1_Y2 **
28773535-G-A 26627388-G-A **
23838885-G-A 21676999-G-A **
22547594-G-T 20385708-G-T **
23415310-A-T 21253424-A-T **
23352264-C-A 21190378-C-A **
28798351-G-A 26652204-G-A **
23277479-T-A 21115593-T-A **
23192869-A-C 21030983-A-C **
23066181-T-G 20904295-T-G **
23019771-C-A 20857885-C-A **
22810908-A-G 20649022-A-G **
19517510-T-G 17405630-T-G **
19517454-T-G 17405574-T-G **
28401902-C-A 26255755-C-A P1_gr2 **
15289958-T-A 13178057-T-A **
16017845-C-A 13905965-C-A **
16000011-C-A 13888131-C-A **
28798455-G-T 26652308-G-T **
15785835-C-A 13673955-C-A **
15679913-A-C 13568033-A-C **
15584514-A-C 13472634-A-C **
15369036-C-A 13257156-C-A **
14831720-GTTTTTTT-G 12719787-GTTTTTTT-G 17×T**
16336307-C-A 14224427-C-A **
14586741-C-T 12474941-C-T BY206760 **
14554560-C-A 12442761-C-A **
14380888-A-T 12260184-A-T FT111278 **
24420880-T-G 22274733-T-G **
28800729-G-GGAATT 26654582-G-GGAATT **
14308200-G-A 12187494-G-A **
14304433-C-A 12183727-C-A **
14292852-C-A 12172146-C-A **
16070112-A-T 13958232-A-T **
16475332-G-C 14363452-G-C **
19468850-G-A 17356970-G-A FT111987 **
17683122-C-G 15571242-C-G **
19433782-C-A 17321902-C-A **
19304445-C-A 17192565-C-A **
19251800-C-A 17139920-C-A **
19248090-T-C 17136210-T-C **
19081307-A-T 16969427-A-T **
18379869-T-TC 16267989-T-TC P6_Prx **
17683125-A-G 15571245-A-G **
17683121-C-T 15571241-C-T **
16843009-G-A 14731129-G-A **
17683093-A-C 15571213-A-C **
17683091-G-A 15571211-G-A **
17683062-A-G 15571182-A-G **
17683057-T-C 15571177-T-C **
17683042-CAATTTTATGA-C 15571162-CAATTTTATGA-C **
17683035-G-T 15571155-G-T **
17372344-C-A 15260464-C-A **
16968271-A-C 14856391-A-C **
19510257-C-A 17398377-C-A **
2859427-C-A 2991386-C-A **
16589-G-C **
3726591-C-A 3858550-C-A **
10924420-T-A **
10826816-A-T **
10826807-CCTAAA-C **
10826807-C-T **
10826800-G-T **
10826799-T-C **
5274214-G-GA 5406173-G-GA 9×A**
11030293-A-G **
10996653-T-C **
11029280-C-A **
3759088-C-A 3891047-C-A **
17737618-CAAA-C 15625738-CAAA-C 14×A**
27484492-TTGTG-T 25338345-TTGTG-T P1_Y2 14×TG**
23516440-C-A 21354554-C-A **
10785301-T-G **
11030204-A-T **
13258527-C-A 11102851-C-A **
6085404-C-A 6217363-C-A **
24296173-T-TC 22150026-T-TC P3_t1 **
20869230-T-TG 18707344-T-TG P4_Dst **
4616630-C-A 4748589-C-A **
10924417-C-A **
15262458-CAAAA-C 13150542-CAAAA-C 30×A**
27976945-C-CA 25830798-C-CA P1_Y2 12×A**
56833070-C-G **
17402501-CTTT-C 15290621-CTTT-C 14×T**
20025383-A-T 17913503-A-T P5_Prx **
13870627-C-A 11749921-C-A **
13708910-A-T 11553234-A-T **
28483631-C-A 26337484-C-A **
10989834-G-TA **
5247401-C-A 5379360-C-A **
14312078-C-A 12191372-C-A **
17991058-A-AAT 15879178-A-AAT P7_Prx 9×AT**
3254368-C-A 3386327-C-A **
10660740-C-A **
28505603-C-A 26359456-C-A **
3640196-C-A 3772155-C-A **
22236512-C-A 20074626-C-A DYZ19 **
15468678-CAAAAAAA-C 13356798-CAAAAAAA-C 23×A**
11017631-T-A **
9932647-C-A 10095038-C-A **
56827233-A-T **
20951195-T-TA 18789309-T-TA P4_Dst **
27952089-GTGTA-G 25805942-GTGTA-G P1_Y2 **
22124331-C-A 19962445-C-A **
21072375-C-A 18910489-C-A **
10772435-C-G **
16843024-T-C 14731144-T-C **
58979279-A-T 56833132-A-T **
22229585-T-C 20067699-T-C DYZ19 **
22287053-T-A 20125167-T-A DYZ19 **
7464037-C-CA 7595996-C-CA IR1_L 19×A**
3229154-CAAAAA-C 3361113-CAAAAA-C 20×A**
27762774-C-CAT 25616627-C-CAT P1_Y2 **
17683126-C-T 15571246-C-T **
14458047-C-A 12337320-C-A **
21149614-C-A 18987728-C-A **
22361666-C-T 20199780-C-T DYZ19 **
28462074-G-T 26315927-G-T **
14743154-C-CAA 12631222-C-CAA 19×A**
9416722-C-T 9579113-C-T **
20025441-CT-C 17913561-CT-C P5_Prx **
16526592-C-A 14414712-C-A **
18982582-AAAAAG-A 16870702-AAAAAG-A **
56827206-C-A **
10754756-A-T **
10851023-T-C **
18628068-C-A 16516188-C-A **
10759855-TAA-T **
16309170-G-A 14197290-G-A **
18565362-C-A 16453482-C-A **
56833507-A-CCACTT **
10754787-C-T **
10754786-A-C **
10754749-C-CCCCTCCTTTA **
10760732-C-G **
8269647-C-A 8401606-C-A **
11030251-A-C **
8109964-AT-A 8241923-AT-A **
11030243-C-T **
2708570-C-A 2840529-C-A **
11021372-C-T **
19673513-T-G 17561633-T-G P5_Prx **
10672089-C-T **
22520786-C-A 20358900-C-A **
20629095-T-C 18467209-T-C P4_Prx **
10837835-C-G **
10778973-T-C **
3218518-C-A 3350477-C-A **
27976992-A-AC 25830845-A-AC P1_Y2 **
13482409-C-A 11326733-C-A **
56825737-G-T **
28818026-G-T 26671879-G-T **
21368730-T-G 19206844-T-G **
10961348-T-C **
9540687-A-AC 9703078-A-AC IR3_Prx **
13644529-C-A 11488853-C-A FGC58508 **
56845817-A-C **
11647840-C-A **
28796999-A-T 26650852-A-T **
14007517-C-A 11886811-C-A **
20199881-CAAAA-C 18037995-CAAAA-C P5_Dst 28×A**
11028124-C-A **
10692553-T-A **
17440386-C-A 15328506-C-A **
16679385-T-C 14567505-T-C **
13602918-C-A 11447242-C-A **
56833082-A-T **
22729242-C-A 20567356-C-A **
56831055-T-C **
14785424-C-A 12673494-C-A **
10801417-C-A **
7970452-G-T 8102411-G-T **
6541280-C-A 6673239-C-A **
10807296-AA-T **
10782453-C-A **
5292361-C-A 5424320-C-A **
6310858-C-CAG 6442817-C-CAG IR3_Dst **
19416670-C-A 17304790-C-A FGC16463 F12730 Y4615 **
10969043-C-T **
10989836-TG-T **
4417563-C-A 4549522-C-A **
19459222-G-T 17347342-G-T **
16006785-C-A 13894905-C-A **
8712094-C-A 8844053-C-A **
10778998-C-T **
15468609-G-A 13356729-G-A BZ356 **
7197399-C-CTT 7329358-C-CTT 12×T**
10900405-C-A **
10893199-C-A **
21068402-C-A 18906516-C-A **
17306530-C-A 15194650-C-A **
16055017-C-A 13943137-C-A **
13461698-C-A 11306022-C-A **
18127862-C-A 16015982-C-A **
10661262-C-A **
20637759-C-A 18475873-C-A P4_Prx **
20650559-T-TA 18488673-T-TA P4_Prx **
13869140-G-T 11748434-G-T **
14068481-C-T 11947775-C-T **
14068463-T-TCAGC 11947757-T-TCAGC **
16679383-A-G 14567503-A-G **
7894919-C-A 8026878-C-A **
23013798-C-A 20851912-C-A **
17567478-C-A 15455598-C-A **
10807321-A-G **
14786281-C-A 12674351-C-A **
10692520-T-C **
10971148-T-A **
28798355-A-AG 26652208-A-AG **
17737680-C-A 15625800-C-A **
21853631-C-A 19691745-C-A **
10686322-C-T **
5523669-C-A 5655628-C-A **
10779027-T-A **
28800713-G-T 26654566-G-T **
28800708-A-T 26654561-A-T **
14517881-C-A 12406082-C-A **
24405211-G-A 22259064-G-A **
2845259-AG-A 2977218-AG-A **
15863210-C-A 13751330-C-A ***
13452129-A-G 11296453-A-G ***
17419439-ATTTTTT-A 15307559-ATTTTTT-A 25×T***
22998380-C-A 20836494-C-A ***
56858568-TGGACC-T ***
13456986-C-A 11301310-C-A ***
18045371-CT-C,CTT 15933491-CT-C,CTT 18×T***
23255909-G-T 21094023-G-T ***
17940807-A-G 15828927-A-G ***
15558499-TAGAC-T 13446619-TAGAC-T 5×AGAC***
14764854-C-A 12652923-C-A ***
17201762-CTT-C,CT 15089882-CTT-C,CT 16×T***
13452558-CTCCACACCACTGCAT-C 11296882-CTCCACACCACTGCAT-C ***
13450411-CTCCATTCCATTCCATTCTATTCCAT-C,CTCCATTCCATTCCATTCCATTCCAT 11294735-CTCCATTCCATTCCATTCTATTCCAT-C,CTCCATTCCATTCCATTCCATTCCAT ***
15952633-C-A 13840753-C-A ***
22147204-T-G 19985318-T-G ***
16830499-C-A 14718619-C-A ***
19049470-A-AAAT,AAATAAT 16937590-A-AAAT,AAATAAT 12×AAT***
13992191-CAA-C,CA 11871485-CAA-C,CA 22×A***
23009671-T-C 20847785-T-C ***
18853701-C-A 16741821-C-A ***
19333229-ATTT-A,AT 17221349-ATTT-A,AT 21×T***
19358638-C-A 17246758-C-A ***
10682504-T-A ***
10682486-C-G ***
17153555-C-A 15041675-C-A ***
22023684-GT-G,GTT 19861798-GT-G,GTT 17×T***
7221788-C-A 7353747-C-A ***
6784716-T-C 6916675-T-C ***
10682530-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 431343960768679249867870977
Used in age calculations960768679249867870977
Counts of SNPs67
Variant counts last updated 2019-11-12 02:52:03.



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