Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
24607
19827883-A-G 17716003-A-G P5_Prx A*
26221411-G-A 24075264-G-A P1_Y1 A*
22318455-A-G 20156569-A-G DYZ19 A*
22307879-G-T 20145993-G-T DYZ19 A*
22291361-T-C 20129475-T-C DYZ19 A*
26126348-C-T 23980201-C-T P1_Y1 A*
6238545-C-G 6370504-C-G IR3_Dst A*
19008418-G-A 16896538-G-A BY125500 YY+
19115700-G-A 17003820-G-A BY126402 YY+
19149203-A-C 17037323-A-C BY126729 YY+
16403392-A-C 14291512-A-C BY107525 YY+
19255141-G-C 17143261-G-C BY127698 YY+
18918403-A-T 16806523-A-T BY124803 YY+
18562377-G-A 16450497-G-A BY177107 YY+
18031120-C-A 15919240-C-A BY33163 YY10×A+
17527162-T-A 15415282-T-A BY177012 YY+
17396811-A-T 15284931-A-T BY176999 YY+
17240677-C-G 15128797-C-G BY113226 YY+
4070640-G-A 4202599-G-A BY176381 +
16255313-G-A 14143433-G-A BY106405 YY+
15107390-G-A 12995477-G-A BY99732 YY+
21032082-G-T 18870196-G-T BY130006 Y+
14847491-A-G 12735557-A-G BY97968 YY+
14805822-C-T 12693893-C-T BY97686 YY+
10006766-C-T 10169157-C-T BY53977 Y+
8877821-G-A 9009780-G-A Y+
8498754-C-T 8630713-C-T BY73439 YY+
8170974-T-C 8302933-T-C BY70469 YY+
7667209-C-A 7799168-C-A BY66674 YY+
7290067-C-T 7422026-C-T BY64413 YY+
7032792-C-T 7164751-C-T BY62919 Y+
9672335-G-A 9834726-G-A BY176681 IR3_Prx +
6653052-C-G 6785011-C-G BY60537 YY+
3160620-T-C 3292579-T-C BY57462 +
14853104-C-A 12741170-C-A BY98024 YY+
15421106-G-A 13309226-G-A BY101477 YY+
25850622-C-A 23704475-C-A BY186008 P1_Y1 +
22763686-T-A 20601800-T-A BY52037 YY8×A+
23437652-G-A 21275766-G-A BY55464 YY+
22477954-G-A 20316068-G-A BY177562 DYZ19 +
23250148-A-G 21088262-A-G BY144092 YY+
22467676-A-G 20305790-A-G BY177559 DYZ19 +
23149321-G-A 20987435-G-A BY143378 YY+
23615768-T-G 21453882-T-G BY146736 YY+
17304915-TAAAT-T,TATAG 15193035-TAAAT-T,TATAG *
22230467-A-G 20068581-A-G DYZ19 *
22281182-T-C 20119296-T-C DYZ19 *
28807611-G-C 26661464-G-C *
22345333-G-C 20183447-G-C DYZ19 *
8622199-GACAC-G 8754158-GACAC-G 12×AC*
28808333-C-T 26662186-C-T *
9416847-C-A 9579238-C-A **
9773719-C-A 9936110-C-A **
9996051-C-A 10158442-C-A **
9654442-G-T 9816833-G-T IR3_Prx **
21049337-C-A 18887451-C-A **
10013704-G-A 10176095-G-A **
23837815-G-T 21675929-G-T **
10669496-C-CCAGT **
10673917-C-G **
10689551-C-A **
10691003-C-T **
10691026-T-G **
10755382-C-G **
10796672-C-CATGTG **
10796689-T-G **
10796704-T-C **
10796715-T-A **
10669490-A-ACTCGGG **
7140812-A-G 7272771-A-G **
8214222-T-TAA 8346181-T-TAA **
6392312-G-T 6524271-G-T **
5178476-C-A 5310435-C-A **
5185585-T-C 5317544-T-C **
16186609-T-G 14074729-T-G Z12170 **
56832896-T-G **
5200067-G-A 5332026-G-A **
5241692-G-T 5373651-G-T **
5448735-T-C 5580694-T-C **
5688575-C-A 5820534-C-A **
5969092-T-C 6101051-T-C **
28734736-C-A 26588589-C-A **
24512310-C-A 22366163-C-A **
6776264-AGGAG-A 6908223-AGGAG-A **
6822384-C-T 6954343-C-T **
6858593-T-A 6990552-T-A **
28700784-C-A 26554637-C-A **
7019219-A-G 7151178-A-G **
26380190-G-T 24234043-G-T P1_Y1 **
10885202-C-T **
7143375-C-G 7275334-C-G **
7275046-A-G 7407005-A-G **
10798460-C-A **
13305543-G-C 11149867-G-C **
10885211-C-CCACTT **
18650862-C-A 16538982-C-A **
23223228-G-A 21061342-G-A **
16604925-A-G 14493045-A-G **
16750168-T-G 14638288-T-G **
17433974-A-C 15322094-A-C **
22655231-C-A 20493345-C-A **
17779734-C-A 15667854-C-A **
18322160-C-A 16210280-C-A P6_Prx **
18401229-A-AT 16289349-A-AT P6_Gap **
18626115-C-T 16514235-C-T **
18759035-T-C 16647155-T-C **
16186580-A-G 14074700-A-G **
18949864-A-G 16837984-A-G **
21853683-A-AT 19691797-A-AT **
21368407-A-G 19206521-A-G **
19422916-C-A 17311036-C-A **
19476391-C-A 17364511-C-A **
19520838-T-G 17408958-T-G **
21154617-C-A 18992731-C-A **
19839758-T-C 17727878-T-C P5_Prx **
19864119-A-G 17752239-A-G P5_Prx **
20053481-A-AC 17941601-A-AC P5_Prx **
23223233-T-A 21061347-T-A **
16070683-C-T 13958803-C-T **
10995789-C-T **
13840674-C-A 11719968-C-A **
10995822-T-C **
13227975-C-A 11072299-C-A **
13229937-C-T 11074261-C-T BY84717 **
20815630-G-A 18653744-G-A P4_Gap **
13314566-G-A 11158890-G-A **
13461730-C-A 11306054-C-A **
13659516-G-A 11503840-G-A **
13724806-TG-T 11569130-TG-T **
13743028-C-A 11587352-C-A **
13922406-A-G 11801700-A-G **
16033780-T-C 13921900-T-C **
14239214-C-A 12118508-C-A **
14537651-AT-A 12425852-AT-A **
23223243-T-C 21061357-T-C **
23223240-G-T 21061354-G-T **
14992901-C-A 12880986-C-A **
23223237-A-T 21061351-A-T **
15114743-G-A 13002830-G-A **
15215512-C-A 13103598-C-A **
15363878-G-A 13251998-G-A **
4926033-G-T 5057992-G-T **
35601-G-A **
5190130-C-A 5322089-C-A **
2812777-A-AT 2944736-A-AT 30×T**
3546015-G-A 3677974-G-A **
14241944-C-A 12121238-C-A **
9830499-C-A 9992890-C-A **
10796688-A-C **
5828960-CACACAA-C 5960919-CACACAA-C **
22536293-C-A 20374407-C-A **
10942776-C-A **
15648772-C-A 13536892-C-A **
56826588-C-G **
3385236-C-A 3517195-C-A **
10755374-C-T **
10947363-A-C **
10985090-A-ATTG **
6807947-C-A 6939906-C-A **
15565939-CAAAA-C 13454059-CAAAA-C 16×A**
3790933-C-A 3922892-C-A **
56830339-A-G **
15111394-A-G 12999481-A-G **
25985388-T-TC 23839241-T-TC P1_Y1 **
14795027-C-CA 12683098-C-CA 8×A**
14702055-C-A 12590121-C-A **
28756204-T-C 26610057-T-C **
22092926-C-A 19931040-C-A **
10755359-A-C **
7897209-G-T 8029168-G-T **
13939998-C-A 11819292-C-A **
10748273-A-T **
10669484-C-T **
10770669-A-C **
10673922-C-CCAATT **
19310908-T-G 17199028-T-G **
10995768-C-A **
10770616-TACAC-T **
10770612-C-CGTCT **
10760402-T-TCCAC **
16707087-T-G 14595207-T-G **
10760382-C-CTCTACGGCTT **
8734943-C-A 8866902-C-A **
23565521-C-A 21403635-C-A **
13922426-C-A 11801720-C-A **
17081313-A-T 14969433-A-T **
11657440-C-A **
13854358-C-A 11733652-C-A **
2806233-G-T 2938192-G-T **
10796648-A-C **
15987432-C-A 13875552-C-A **
10755371-C-G **
18708009-C-A 16596129-C-A **
10770587-C-A **
13227817-T-G 11072141-T-G **
10770592-C-G **
27263174-G-T 25117027-G-T P1_g3 **
21015076-AGG-A 18853190-AGG-A P4_Dst **
7363932-C-A 7495891-C-A **
13488885-A-G 11333209-A-G **
7853237-AT-A 7985196-AT-A 8×T**
10789345-CA-C **
27971698-C-A 25825551-C-A P1_Y2 **
8214208-G-A 8346167-G-A **
10024118-T-C 10186509-T-C **
10648079-T-A **
15363896-T-TA 13252016-T-TA **
10851728-C-A **
9639183-C-CTT 9801574-C-CTT IR3_Prx 12×T**
13487667-C-T 11331991-C-T **
23832908-C-A 21671022-C-A **
21888410-C-A 19726524-C-A **
3849097-C-A 3981056-C-A **
21155172-C-A 18993286-C-A **
21285305-C-A 19123419-C-A **
7623526-T-C 7755485-T-C **
9731617-T-TC 9894008-T-TC IR3_Prx **
7107011-C-CTA 7238970-C-CTA 20×TA**
10995832-T-A **
7285590-T-A 7417549-T-A **
21895498-T-C 19733612-T-C **
10691013-C-T **
7288120-C-A 7420079-C-A **
18688500-C-CAAA 16576620-C-CAAA 20×A**
22729415-C-A 20567529-C-A **
56827416-C-A **
18322147-C-A 16210267-C-A P6_Prx **
14009401-A-C 11888695-A-C **
21895495-A-T 19733609-A-T **
21775199-G-T 19613313-G-T **
13456336-T-C 11300660-T-C **
3274750-C-A 3406709-C-A **
10755417-C-T **
17014670-C-A 14902790-C-A **
7101001-C-A 7232960-C-A **
18724886-G-GTT 16613006-G-GTT 11×T**
14688787-C-A 12576853-C-A **
3274303-T-C 3406262-T-C **
23007686-G-T 20845800-G-T **
2812774-A-T 2944733-A-T **
3229576-G-A 3361535-G-A **
9305001-C-A 9467392-C-A **
14445047-C-A 12324320-C-A **
10796706-C-G **
15498062-G-C 13386182-G-C **
15435213-C-T 13323333-C-T **
2806243-G-T 2938202-G-T **
3965401-C-A 4097360-C-A **
10995779-C-T **
19527230-C-A 17415350-C-A **
15168116-C-T 13056202-C-T **
15786552-C-A 13674672-C-A **
10755425-T-G **
27423659-C-A 25277512-C-A P1_g3 **
19007619-CATATAT-C 16895739-CATATAT-C 10×AT***
15612199-T-TAC 13500319-T-TAC 8×AC***
27030401-G-A 24884254-G-A P1_r4 ***
15557033-CAAA-C,CAA 13445153-CAAA-C,CAA 18×A***
13811172-T-A 11690466-T-A ***
14926270-C-T 12814335-C-T ***
13811173-G-A 11690467-G-A ***
16420968-C-A 14309088-C-A ***
4241552-C-A 4373511-C-A ***
15495460-C-CA,CAA 13383580-C-CA,CAA 16×A***
9645653-CTTTTTT-C,CTTTTT 9808044-CTTTTTT-C,CTTTTT IR3_Prx 20×T***
14488383-A-G 12367652-A-G ***
21556572-C-A 19394686-C-A ***
24458760-CA-C,CAA 22312613-CA-C,CAA 18×A***
14377231-C-A 12256527-C-A ***
7148013-CTTTT-C,CTT 7279972-CTTTT-C,CTT 17×T***
6773420-C-A 6905379-C-A ***
8983339-G-T 9145730-G-T ***
5412296-C-A 5544255-C-A ***
7021975-C-A 7153934-C-A ***
13489177-A-C 11333501-A-C ***
10789386-A-T ***
13463343-C-G 11307667-C-G ***
13478357-T-A 11322681-T-A ***
10789387-T-G ***
10023042-C-A 10185433-C-A ***
21555238-CT-C,CTTT 19393352-CT-C,CTTT 15×T***
56833289-T-C ***
10789364-C-G ***
15864148-C-A 13752268-C-A ***
5242504-A-G 5374463-A-G ***
15662627-C-A 13550747-C-A ***
15183125-C-A 13071211-C-A ***
21946246-C-A 19784360-C-A ***
18035665-CTTTTTTTT-C 15923785-CTTTTTTTT-C 30×T***
21549183-GTTT-G 19387297-GTTT-G 17×T***
18917425-C-A 16805545-C-A ***
13489155-G-A 11333479-G-A ***
20516443-T-TAC,TACAC 18354557-T-TAC,TACAC P5_Dst 18×AC***
15677516-AAAAAAC-A 13565636-AAAAAAC-A ***
7321714-CCA-C 7453673-CCA-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 24607954710678446977777086
Used in age calculations954710678446977777086
Counts of SNPs3028
Variant counts last updated 2019-06-17 00:07:37.



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