Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC78762 > ZZ19 > Z31644 > A2146 > PH133 > BY187145

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
120428
23867752-C-G 21705866-C-G YA+
8996062-G-C 9158453-G-C YA*
13697936-T-C 11542260-T-C A*
19967394-C-T 17855514-C-T P5_Prx A*
28103949-C-CT 25957802-C-CT P1_Y2 22×TA*
20790570-G-A 18628684-G-A P4_Prx A*
23182288-G-A 21020402-G-A YA*
28817831-G-C 26671684-G-C A*
28817449-G-C 26671302-G-C A*
22232149-G-T 20070263-G-T DYZ19 A*
22232860-G-A 20070974-G-A DYZ19 A*
15914445-C-T 13802565-C-T BY187362 YY+
17945794-T-C 15833914-T-C BY187756 YY+
7349679-C-T 7481638-C-T BY186388 YY+
22478089-G-C 20316203-G-C BY223965 DYZ19 +
22088995-AACTGGCATGGCGGTGGGTGACTATAATCCCAGCT-A 19927109-AACTGGCATGGCGGTGGGTGACTATAATCCCAGCT-A +
22233496-AG-A 20071610-AG-A DYZ19 +
24383783-T-TA 22237636-T-TA +
17082994-CTTTCTTTCTTT-C 14971114-CTTTCTTTCTTT-C +
17156341-TA-T 15044461-TA-T +
18882336-A-T 16770456-A-T BY187929 YY+
2655595-T-C 2787554-T-C BY186172 YY+
14778539-G-A 12666609-G-A BY187148 YY+
22862295-A-G 20700409-A-G BY188491 YY+
17851516-T-A 15739636-T-A BY187728 YY+
6346480-C-T 6478439-C-T BY186253 +
14378579-G-T 12257875-G-T BY187083 YY+
13822616-T-C 11701910-T-C BY186961 +
8222601-A-G 8354560-A-G BY186607 YY+
8337718-G-T 8469677-G-T BY186629 YY+
9537854-G-A 9700245-G-A BY186886 IR3_Prx +
28778558-C-G 26632411-C-G BY227208 +
8482900-T-C 8614859-T-C BY186669 YY+
13812529-A-T 11691823-A-T BY186947 +
8346523-TC-T 8478482-TC-T +
9457710-C-G 9620101-C-G BY186863 YY+
27988051-T-C 25841904-T-C BY227005 P1_Y2 +
22089099-C-CCATTGTGCTCCAGCTGCAA 19927213-C-CCATTGTGCTCCAGCTGCAA *
22460222-T-A 20298336-T-A BY191946 DYZ19 *
17275011-C-CAGAT 15163131-C-CAGAT *
22432312-C-G 20270426-C-G DYZ19 *
23729355-T-A 21567469-T-A BY27424 FGC74354 *
22345113-G-A 20183227-G-A DYZ19 *
22255042-G-A 20093156-G-A DYZ19 *
23827542-CAA-C,CA 21665656-CAA-C,CA 17×A*
22279193-A-C 20117307-A-C DYZ19 *
6332527-C-T 6464486-C-T IR3_Dst *
22089099-C-A 19927213-C-A YY*
13594517-C-A 11438841-C-A **
11653747-G-T **
10999884-C-CGTTG **
11018048-C-A **
11017460-C-A **
11650405-A-C **
10999878-C-CGG **
10989836-T-A **
10955656-A-C **
11018062-C-A **
13254020-C-TA 11098344-C-TA **
11025144-A-T **
13205463-C-A 11049787-C-A **
13243610-C-A 11087934-C-A **
11643401-A-G **
13306941-C-A 11151265-C-A **
13696896-T-A 11541220-T-A **
13695520-T-G 11539844-T-G **
13371568-T-C 11215892-T-C **
13454256-C-A 11298580-C-A **
13602889-G-A 11447213-G-A **
13591156-C-T 11435480-C-T **
11671244-A-G **
11653737-G-T **
10844237-C-T **
10955649-G-T **
10023608-C-A 10185999-C-A **
10778644-C-A **
10754146-A-G **
10751176-T-G **
10682524-T-TTCTTC **
10673888-C-CATTTA **
10625636-A-C **
9973794-T-C 10136185-T-C **
10820216-C-A **
9968409-T-C 10130800-T-C **
9047775-A-G 9210166-A-G **
9013132-C-G 9175523-C-G **
9013125-G-A 9175516-G-A **
7964684-T-C 8096643-T-C **
7097459-G-A 7229418-G-A FT8399 **
10789793-A-C **
10820225-C-A **
10955621-T-A **
10878232-A-G **
10955618-C-T **
10955600-G-C **
10955581-C-T **
10940086-T-TA **
10921395-C-A **
10921327-A-G **
10877944-C-A **
10830633-CTCCAT-C **
10869981-CCA-C **
10844243-C-A **
10844242-C-A **
13859930-G-C 11739224-G-C **
10839982-CATT-C **
10839976-CCA-C **
10839955-T-G **
13859873-T-G 11739167-T-G **
22241631-C-A 20079745-C-A DYZ19 **
13945390-C-A 11824684-C-A **
22422850-T-A 20260964-T-A DYZ19 **
23285361-C-G 21123475-C-G **
23225584-T-C 21063698-T-C **
23190264-C-A 21028378-C-A **
23007494-T-C 20845608-T-C **
22816242-A-T 20654356-A-T **
22816204-C-T 20654318-C-T **
22317867-G-T 20155981-G-T DYZ19 **
23802117-C-T 21640231-C-T **
22309928-GTTAC-G 20148042-GTTAC-G DYZ19 **
22092803-AT-A 19930917-AT-A **
21984147-C-A 19822261-C-A **
21668597-C-A 19506711-C-A **
21448954-T-C 19287068-T-C **
21248237-C-A 19086351-C-A **
21011266-T-TG 18849380-T-TG P4_Dst **
23727925-T-A 21566039-T-A **
23825601-AC-A 21663715-AC-A **
20759815-A-T 18597929-A-T P4_Prx **
28589245-T-C 26443098-T-C **
56837945-A-G **
56832054-A-T **
56830819-C-T **
28797793-C-CAGTGA 26651646-C-CAGTGA **
28791260-G-T 26645113-G-T **
28764254-C-T 26618107-C-T **
28542239-C-T 26396092-C-T **
21775265-T-G **
28519873-C-A 26373726-C-A **
28482808-C-T 26336661-C-T **
27727514-TTC-T 25581367-TTC-T P1_Y2 **
26009219-C-A 23863072-C-A P1_Y1 **
25955898-A-G 23809751-A-G P1_Y1 **
25080043-A-T 22933896-A-T g1 **
25080032-C-A 22933885-C-A g1 **
20881931-A-T 18720045-A-T P4_Dst **
20669234-A-C 18507348-A-C P4_Prx **
14020165-C-T 11899459-C-T **
15386428-G-A 13274548-G-A **
16624734-G-A 14512854-G-A **
16623823-A-C 14511943-A-C **
15732129-T-C 13620249-T-C **
15731300-C-A 13619420-C-A **
15620367-C-T 13508487-C-T **
15394932-C-A 13283052-C-A **
15011285-G-T 12899370-G-T **
16874337-T-G 14762457-T-G **
15011270-A-T 12899355-A-T **
14695735-G-A 12583801-G-A **
14695731-A-G 12583797-A-G **
14500024-C-A 12388229-C-A **
14451347-G-A 12330620-G-A **
14446780-C-A 12326053-C-A **
14269918-C-A 12149212-C-A **
16826479-G-A 14714599-G-A BY110437 **
16941888-A-C 14830008-A-C **
19678452-G-A 17566572-G-A P5_Prx **
17756757-A-C 15644877-A-C **
19558355-G-A 17446475-G-A **
19253882-C-A 17142002-C-A **
18988673-C-A 16876793-C-A **
18794008-C-A 16682128-C-A **
18793531-C-A 16681651-C-A **
18346393-C-A 16234513-C-A P6_Prx **
18202035-G-T 16090155-G-T **
17514257-C-A 15402377-C-A **
17083006-CT-C 14971126-CT-C **
17349325-T-C 15237445-T-C **
17349264-CG-C 15237384-CG-C **
17349222-AT-A 15237342-AT-A **
17349222-A-C 15237342-A-C **
17203457-CA-C 15091577-CA-C **
17203457-C-G 15091577-C-G **
17203456-C-T 15091576-C-T **
7374471-C-A 7506430-C-A **
7572940-C-A 7704899-C-A **
56839579-G-T **
4932150-G-T 5064109-G-T **
6996747-C-A 7128706-C-A **
16794-G-A **
14716890-G-T 12604958-G-T **
14609795-G-T 12497997-G-T **
18173073-C-A 16061193-C-A **
56827914-C-T **
16745267-C-A 14633387-C-A **
56831605-C-A **
9548982-TG-T 9711373-TG-T IR3_Prx **
10671190-C-A **
22816240-G-A 20654354-G-A **
10766591-C-A **
13919101-C-A 11798395-C-A **
19744919-G-T 17633039-G-T P5_Prx **
20690130-G-T 18528244-G-T P4_Prx **
16707249-G-T 14595369-G-T **
10686605-C-A **
10686588-C-CTCCAT **
15999974-G-T 13888094-G-T **
22300816-G-C 20138930-G-C DYZ19 **
10844275-A-T **
19071674-C-A 16959794-C-A **
11643689-G-T **
22816233-G-A 20654347-G-A **
7155635-T-C 7287594-T-C **
9562311-GT-G 9724702-GT-G IR3_Prx **
58975913-C-T 56829766-C-T **
10880648-C-A **
15823935-G-A 13712055-G-A **
11003762-C-A **
17046712-C-A 14934832-C-A **
11003715-C-A **
11003763-C-T **
19528456-C-A 17416576-C-A **
6882499-C-A 7014458-C-A **
28741097-C-A 26594950-C-A **
4078586-G-T 4210545-G-T **
5080563-G-T 5212522-G-T **
11643731-A-AC **
4561003-C-A 4692962-C-A **
4138977-G-T 4270936-G-T **
23026827-C-A 20864941-C-A **
10999881-T-C **
3229666-C-A 3361625-C-A **
21818997-C-A 19657111-C-A **
16058937-C-A 13947057-C-A **
20570398-C-A 18408512-C-A P5_Dst **
9540128-T-TGC 9702519-T-TGC IR3_Prx **
7043130-C-A 7175089-C-A **
10800882-T-TTACGC **
56830811-A-G **
11652094-C-A **
14795105-G-T 12683176-G-T **
9013092-TAA-T 9175483-TAA-T **
10686601-C-CCCTCT **
7701799-C-A 7833758-C-A **
3116116-C-A 3248075-C-A **
11025157-C-G **
22309916-T-C 20148030-T-C DYZ19 **
18518321-G-T 16406441-G-T P6_Dst **
24296171-CTTT-C 22150024-CTTT-C P3_t1 31×T**
13489221-G-A 11333545-G-A **
58976946-CCACTT-C 56830799-CCACTT-C **
13838474-A-T 11717768-A-T **
10946816-C-A **
18982580-AAAAAAAG-A 16870700-AAAAAAAG-A **
21097171-C-A 18935285-C-A **
19949609-T-TC 17837729-T-TC P5_Prx **
17349235-G-T 15237355-G-T **
9928269-C-A 10090660-C-A **
10839917-C-A **
4242945-C-A 4374904-C-A **
13945399-T-A 11824693-T-A **
6520066-C-A 6652025-C-A **
14147817-T-G 12027111-T-G **
7650408-C-A 7782367-C-A **
17584235-T-G 15472355-T-G **
10979582-T-A **
19739343-C-CAAT 17627463-C-CAAT P5_Prx **
10839966-A-G **
22816252-G-C 20654366-G-C **
14994060-C-A 12882145-C-A **
3092575-C-A 3224534-C-A **
8911776-G-T 9043735-G-T **
18518307-C-A 16406427-C-A P6_Dst **
14585859-G-T 12474059-G-T **
18188831-C-A 16076951-C-A FT10224 **
9602643-T-G 9765034-T-G IR3_Prx **
2960192-C-A 3092151-C-A **
17012834-C-A 14900954-C-A **
3712099-A-G 3844058-A-G **
4900603-G-T 5032562-G-T **
4863664-G-T 4995623-G-T **
4798617-A-G 4930576-A-G **
4586161-A-C 4718120-A-C **
4272693-C-A 4404652-C-A **
3987788-A-T 4119747-A-T **
3800242-G-A 3932201-G-A **
3732085-C-A 3864044-C-A **
3705464-C-A 3837423-C-A **
4950871-C-A 5082830-C-A **
3625630-C-A 3757589-C-A **
3593113-A-G 3725072-A-G **
3011573-G-A 3143532-G-A **
2775482-C-A 2907441-C-A **
2768164-A-G 2900123-A-G **
10814438-C-A **
56830815-C-A **
21862076-A-C 19700190-A-C **
10798947-C-A **
4902275-C-A 5034234-C-A **
4958081-C-T 5090040-C-T **
11643733-G-C **
6330096-A-C 6462055-A-C IR3_Dst **
7140572-C-A 7272531-C-A **
7117499-G-T 7249458-G-T **
7053986-T-G 7185945-T-G **
6978106-A-G 7110065-A-G **
6929955-C-A 7061914-C-A **
6881171-C-A 7013130-C-A **
6827901-C-A 6959860-C-A **
6619656-C-A 6751615-C-A 8×T**
6523172-G-A 6655131-G-A **
6280416-A-AG 6412375-A-AG IR3_Dst **
4995443-C-A 5127402-C-A **
6112656-T-G 6244615-T-G **
6102101-C-A 6234060-C-A **
6086053-A-T 6218012-A-T **
5916748-G-T 6048707-G-T **
5871964-C-A 6003923-C-A **
5863874-C-A 5995833-C-A **
5562729-A-G 5694688-A-G **
5561912-C-T 5693871-C-T **
5199454-C-A 5331413-C-A **
13945393-G-A 11824687-G-A **
16180876-C-A 14068996-C-A **
6327096-C-A 6459055-C-A IR3_Dst **
10898520-G-T **
28765024-C-A 26618877-C-A **
23825577-C-A 21663691-C-A **
11018060-C-A **
15698514-T-G 13586634-T-G **
13712592-T-A 11556916-T-A **
10682563-A-T **
14549641-C-A 12437842-C-A **
7237327-C-A 7369286-C-A **
7885585-C-A 8017544-C-A **
23825608-A-G 21663722-A-G **
6289366-A-C 6421325-A-C IR3_Dst **
23065134-C-A 20903248-C-A **
28535537-T-C 26389390-T-C **
20641611-GA-G 18479725-GA-G P4_Prx **
13932821-G-A 11812115-G-A **
22816230-G-T 20654344-G-T **
14704767-C-A 12592833-C-A **
56841549-G-T **
10999883-C-CG **
13945395-T-C 11824689-T-C **
56825930-G-A **
9013114-C-T 9175505-C-T **
13253525-A-T 11097849-A-T **
13223118-A-C 11067442-A-C **
9013131-G-A 9175522-G-A **
10798278-C-A **
9013129-G-A 9175520-G-A **
15788084-C-A 13676204-C-A **
9825873-C-A 9988264-C-A **
17349329-G-A 15237449-G-A **
7714765-C-A 7846724-C-A ***
8852806-C-A 8984765-C-A ***
8658498-G-A 8790457-G-A ***
56829764-T-G ***
14431806-C-A 12311079-C-A ***
13717974-G-C 11562298-G-C ***
16915218-AAAT-A 14803338-AAAT-A ***
23376979-C-A 21215093-C-A ***
5871865-C-A 6003824-C-A ***
13489203-C-A 11333527-C-A ***
14391907-C-A 12271203-C-A ***
21386276-C-A 19224390-C-A ***
22827520-T-TA 20665634-T-TA ***
18398750-C-A 16286870-C-A P6_Gap ***
18687898-C-A 16576018-C-A ***
13482245-G-A 11326569-G-A ***
9333967-C-A 9496358-C-A ***
18982588-AAAAAAAG-A,AAAAAAAA 16870708-AAAAAAAG-A,AAAAAAAA ***
13457865-C-A 11302189-C-A BY46501 ***
18267377-AT-A 16155497-AT-A 10×T***
7228736-CA-C 7360695-CA-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 120428983314880686067987550
Used in age calculations983314880686067987550
Counts of SNPs1516
Variant counts last updated 2019-07-19 21:37:52.



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