Maness
BigY2: B122524MDKA Birth: Scotland
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 B122524 |
---|---|---|---|---|---|---|---|---|
13842716-T-TGCAGG | 11722010-T-TGCAGG | A* | ||||||
20654951-A-C | 18493065-A-C | P4_Prx | A* | |||||
20799556-A-G | 18637670-A-G | P4_Prx | A* | |||||
28816573-G-A | 26670426-G-A | A* | ||||||
22920031-T-A | 20758145-T-A | BY179917 | Y | Y | + | |||
23403247-A-G | 21241361-A-G | BY180002 | Y | Y | + | |||
4769547-C-A | 4901506-C-A | PR4356 | ** | |||||
9654348-A-AT | 9816739-A-AT | IR3_Prx | ** | |||||
23235960-G-A | 21074074-G-A | CTS11719 PF4863 Z1888 | ** | |||||
17298771-G-GA | 15186891-G-GA | 9×A | ** | |||||
9379015-A-T | 9541406-A-T | Y2271 | ** | |||||
7690182-A-T | 7822141-A-T | M2308 Z4842 V1371 | ** | |||||
13799230-T-G | 11678524-T-G | FGC18669 | 4×AATGG | ** | ||||
13850275-T-A | 11729569-T-A | FT216139 | ** | |||||
22875535-C-A | 20713649-C-A | ** | ||||||
23371594-A-G | 21209708-A-G | S3449 | CTS11934 | ** | ||||
13489188-G-T | 11333512-G-T | ** | ||||||
13728448-A-T | 11572772-A-T | ** | ||||||
24595356-CTTT-C | 22449209-CTTT-C | P3_t2 | 26×T | ** | ||||
13489183-G-T | 11333507-G-T | ** | ||||||
10817548-G-T | ** | |||||||
10686713-C-T | ** | |||||||
10962897-C-A | ** | |||||||
10927634-T-C | ** | |||||||
22134019-G-T | 19972133-G-T | ** | ||||||
28764894-C-A | 26618747-C-A | ** | ||||||
10935581-C-T | ** | |||||||
7132934-T-A | 7264893-T-A | ** | ||||||
7132935-T-TAC | 7264894-T-TAC | ** | ||||||
24931641-C-A | 22785494-C-A | g1 | ** | |||||
7145678-C-A | 7277637-C-A | ** | ||||||
10753190-T-C | FT429703 | ** | ||||||
24611462-GT-G | 22465315-GT-G | P3_t2 | ** | |||||
16777645-G-A | 14665765-G-A | ** | ||||||
10868206-C-A | ** | |||||||
10658388-C-A | ** | |||||||
10658398-C-CATTAA | ** | |||||||
7431714-A-T | 7563673-A-T | ** | ||||||
10753181-C-A | ** | |||||||
10795964-G-T | ** | |||||||
2833376-G-A | 2965335-G-A | ** | ||||||
13457736-C-T | 11302060-C-T | ** | ||||||
7106420-A-G | 7238379-A-G | ** | ||||||
7106455-G-A | 7238414-G-A | ** | ||||||
7188216-C-A | 7320175-C-A | A18764 | ** | |||||
10979822-C-G | ** | |||||||
10979829-T-A | ** | |||||||
10979835-T-C | ** | |||||||
10979846-C-T | ** | |||||||
10979847-T-C | ** | |||||||
10979848-G-C | ** | |||||||
10979855-T-C | ** | |||||||
23633371-CTTTTTT-C | 21471485-CTTTTTT-C | 21×T | ** | |||||
10799634-C-T | ** | |||||||
10753239-C-A | ** | |||||||
21623838-G-GTT | 19461952-G-GTT | ** | ||||||
10979883-A-C | ** | |||||||
10979897-A-T | ** | |||||||
10979910-G-T | ** | |||||||
10979911-C-G | ** | |||||||
10979913-G-T | ** | |||||||
7106428-C-CA | 7238387-C-CA | ** | ||||||
7106439-C-T | 7238398-C-T | ** | ||||||
10753244-C-A | ** | |||||||
14780962-C-A | 12669032-C-A | ** | ||||||
9141886-C-A | 9304277-C-A | ** | ||||||
10753189-C-T | ** | |||||||
7311584-T-G | 7443543-T-G | ** | ||||||
9166447-G-C | 9328838-G-C | ** | ||||||
13488926-G-C | 11333250-G-C | ** | ||||||
21218959-T-C | 19057073-T-C | ** | ||||||
14932044-CAA-C | 12820109-CAA-C | 11×A | ** | |||||
56842442-T-C | ** | |||||||
56842454-A-C | ** | |||||||
10887392-C-G | ** | |||||||
17399595-C-A | 15287715-C-A | ** | ||||||
56842443-C-A | ** | |||||||
17217442-A-T | 15105562-A-T | ** | ||||||
18634918-C-A | 16523038-C-A | ** | ||||||
16784261-C-A | 14672381-C-A | ** | ||||||
10679101-G-T | ** | |||||||
17760472-T-C | 15648592-T-C | ** | ||||||
13457703-T-A | 11302027-T-A | ** | ||||||
15198851-C-A | 13086937-C-A | ** | ||||||
8154017-A-G | 8285976-A-G | ** | ||||||
10958183-C-A | ** | |||||||
10958204-T-C | ** | |||||||
10958209-T-C | ** | |||||||
10958215-T-A | ** | |||||||
10658411-C-A | ** | |||||||
10658412-C-A | ** | |||||||
18923808-G-A | 16811928-G-A | ** | ||||||
10962906-T-A | ** | |||||||
10962922-C-A | ** | |||||||
13456019-GATTCCATTCCATTCCATTCCATTCC-G | 11300343-GATTCCATTCCATTCCATTCCATTCC-G | 11×ATTCC | ** | |||||
19369298-C-A | 17257418-C-A | ** | ||||||
19531328-C-A | 17419448-C-A | ** | ||||||
14693905-A-T | 12581971-A-T | ** | ||||||
14693907-T-C | 12581973-T-C | ** | ||||||
18564953-T-C | 16453073-T-C | FT157740 | ** | |||||
21012319-G-T | 18850433-G-T | P4_Dst | ** | |||||
15542235-C-A | 13430355-C-A | ** | ||||||
6644837-A-G | 6776796-A-G | ** | ||||||
6644852-T-C | 6776811-T-C | ** | ||||||
23397240-C-A | 21235354-C-A | ** | ||||||
10658433-C-T | ** | |||||||
18923849-G-A | 16811969-G-A | ** | ||||||
7311643-C-A | 7443602-C-A | ** | ||||||
18996884-C-CTT | 16885004-C-CTT | 13×T | ** | |||||
10679085-T-C | ** | |||||||
18020340-C-A | 15908460-C-A | ** | ||||||
10887405-C-T | ** | |||||||
17217435-A-G | 15105555-A-G | ** | ||||||
18564957-G-A | 16453077-G-A | ** | ||||||
9073384-C-T | 9235775-C-T | ** | ||||||
18222763-A-G | 16110883-A-G | ** | ||||||
22775562-C-A | 20613676-C-A | ** | ||||||
13472161-G-A | 11316485-G-A | ** | ||||||
13472216-C-T | 11316540-C-T | ** | ||||||
16829889-C-A | 14718009-C-A | ** | ||||||
10927670-C-A | ** | |||||||
16968499-C-A | 14856619-C-A | ** | ||||||
15946541-C-A | 13834661-C-A | ** | ||||||
10651626-T-C | ** | |||||||
3833651-TCA-T | 3965610-TCA-T | ** | ||||||
10935509-C-CTCATT | ** | |||||||
10935523-T-G | ** | |||||||
28743137-C-A | 26596990-C-A | ** | ||||||
6644827-C-T | 6776786-C-T | ** | ||||||
14174732-C-A | 12054026-C-A | ** | ||||||
7591259-C-A | 7723218-C-A | ** | ||||||
22950282-T-C | 20788396-T-C | ** | ||||||
19857577-A-AC | 17745697-A-AC | P5_Prx | ** | |||||
10958234-A-AATCCC | ** | |||||||
13489697-GT-G | 11334021-GT-G | ** | ||||||
11651404-T-A | ** | |||||||
28500778-C-A | 26354631-C-A | ** | ||||||
25305237-G-T | 23159090-G-T | P2_r1 | ** | |||||
7100773-C-A | 7232732-C-A | ** | ||||||
18539326-G-T | 16427446-G-T | ** | ||||||
14780977-C-T | 12669047-C-T | ** | ||||||
7354682-C-T | 7486641-C-T | ** | ||||||
10987802-T-A | ** | |||||||
21713500-C-A | 19551614-C-A | ** | ||||||
2833393-T-A | 2965352-T-A | ** | ||||||
10940353-C-T | ** | |||||||
10935579-C-G | ** | |||||||
10799454-A-G | ** | |||||||
10927669-C-T | ** | |||||||
10927671-T-A | ** | |||||||
10927686-T-C | ** | |||||||
16845407-AT-A | 14733527-AT-A | 8×T | ** | |||||
10799442-C-A | ** | |||||||
8735619-C-A | 8867578-C-A | ** | ||||||
17602382-A-T | 15490502-A-T | ** | ||||||
3218531-C-A | 3350490-C-A | ** | ||||||
15433050-C-A | 13321170-C-A | ** | ||||||
16784298-T-G | 14672418-T-G | ** | ||||||
14405065-C-A | 12284362-C-A | ** | ||||||
22950285-T-C | 20788399-T-C | ** | ||||||
7431655-T-C | 7563614-T-C | ** | ||||||
6629973-C-A | 6761932-C-A | ** | ||||||
14232787-T-G | 12112081-T-G | ** | ||||||
8723591-C-A | 8855550-C-A | ** | ||||||
15495782-CA-C | 13383902-CA-C | ** | ||||||
22200016-C-A | 20038130-C-A | ** | ||||||
18277996-C-TA | 16166116-C-TA | P6_Prx | ** | |||||
22132791-C-A | 19970905-C-A | ** | ||||||
16643149-C-A | 14531269-C-A | ** | ||||||
15842024-C-A | 13730144-C-A | ** | ||||||
3271664-C-A | 3403623-C-A | ** | ||||||
7431677-A-G | 7563636-A-G | ** | ||||||
8154010-A-G | 8285969-A-G | ** | ||||||
14888249-ATT-A | 12776315-ATT-A | ** | ||||||
18222776-AAG-A | 16110896-AAG-A | ** | ||||||
21602964-C-A | 19441078-C-A | ** | ||||||
17333385-C-A | 15221505-C-A | ** | ||||||
10663394-T-A | ** | |||||||
9742565-G-T | 9904956-G-T | IR3_Prx | ** | |||||
17854273-C-A | 15742393-C-A | ** | ||||||
14076168-C-A | 11955462-C-A | FTB10427 | ** | |||||
5189575-C-A | 5321534-C-A | ** | ||||||
9166446-G-A | 9328837-G-A | BY164644 | FT65040 | ** | ||||
22164533-G-T | 20002647-G-T | ** | ||||||
23097107-G-T | 20935221-G-T | ** | ||||||
10799441-T-C | FT431734 | ** | ||||||
22950297-T-C | 20788411-T-C | ** | ||||||
23392171-T-C | 21230285-T-C | ** | ||||||
18923873-C-G | 16811993-C-G | ** | ||||||
22950289-T-C | 20788403-T-C | ** | ||||||
14693915-G-A | 12581981-G-A | ** | ||||||
13489119-G-A | 11333443-G-A | ** | ||||||
10769401-AT-A | ** | |||||||
13489124-A-G | 11333448-A-G | ** | ||||||
13489126-G-T | 11333450-G-T | ** | ||||||
13489142-C-A | 11333466-C-A | ** | ||||||
13489172-T-C | 11333496-T-C | ** | ||||||
2699764-C-A | 2831723-C-A | ** | ||||||
2833384-T-C | 2965343-T-C | ** | ||||||
2854975-T-A | 2986934-T-A | ** | ||||||
3060782-C-A | 3192741-C-A | ** | ||||||
3648748-C-T | 3780707-C-T | ** | ||||||
4236048-C-A | 4368007-C-A | ** | ||||||
4862330-C-A | 4994289-C-A | ** | ||||||
4930862-C-A | 5062821-C-A | ** | ||||||
5274612-T-C | 5406571-T-C | ** | ||||||
6273888-A-C | 6405847-A-C | IR3_Dst | ** | |||||
6293785-C-A | 6425744-C-A | IR3_Dst | ** | |||||
6356504-G-A | 6488463-G-A | ** | ||||||
6644836-C-T | 6776795-C-T | ** | ||||||
6644847-T-C | 6776806-T-C | ** | ||||||
6717295-C-A | 6849254-C-A | ** | ||||||
6878033-T-C | 7009992-T-C | ** | ||||||
6956483-C-A | 7088442-C-A | ** | ||||||
7013276-C-A | 7145235-C-A | ** | ||||||
7013636-C-T | 7145595-C-T | ** | ||||||
7098928-G-GA | 7230887-G-GA | ** | ||||||
7106413-T-C | 7238372-T-C | ** | ||||||
7106436-C-T | 7238395-C-T | ** | ||||||
7106438-C-T | 7238397-C-T | ** | ||||||
7172409-G-T | 7304368-G-T | ** | ||||||
7187750-TC-T | 7319709-TC-T | ** | ||||||
7302415-T-C | 7434374-T-C | ** | ||||||
7313702-A-C | 7445661-A-C | ** | ||||||
7404025-A-G | 7535984-A-G | ** | ||||||
7431669-C-T | 7563628-C-T | ** | ||||||
7431670-A-G | 7563629-A-G | ** | ||||||
7431672-A-G | 7563631-A-G | ** | ||||||
7431693-TTAA-T | 7563652-TTAA-T | ** | ||||||
7431699-G-GC | 7563658-G-GC | ** | ||||||
7431706-G-T | 7563665-G-T | ** | ||||||
7431718-T-A | 7563677-T-A | ** | ||||||
7513236-T-C | 7645195-T-C | ** | ||||||
7529646-G-A | 7661605-G-A | ** | ||||||
7613918-G-T | 7745877-G-T | ** | ||||||
7645132-G-T | 7777091-G-T | ** | ||||||
7649245-G-A | 7781204-G-A | ** | ||||||
7701541-T-A | 7833500-T-A | ** | ||||||
8110699-C-A | 8242658-C-A | ** | ||||||
8650083-A-G | 8782042-A-G | ** | ||||||
8721268-C-A | 8853227-C-A | ** | ||||||
8729306-T-C | 8861265-T-C | ** | ||||||
8906840-T-C | 9038799-T-C | ** | ||||||
8987852-G-T | 9150243-G-T | ** | ||||||
9166427-G-T | 9328818-G-T | ** | ||||||
9166457-A-G | 9328848-A-G | ** | ||||||
9166462-T-C | 9328853-T-C | ** | ||||||
9166463-G-A | 9328854-G-A | ** | ||||||
9476057-A-G | 9638448-A-G | ** | ||||||
9855884-A-G | 10018275-A-G | ** | ||||||
9879412-C-A | 10041803-C-A | ** | ||||||
9931977-C-A | 10094368-C-A | ** | ||||||
10652632-C-A | ** | |||||||
10769390-C-T | ** | |||||||
10769398-T-TC | ** | |||||||
10769405-C-T | ** | |||||||
10780666-A-C | ** | |||||||
10874897-C-A | ** | |||||||
10935582-C-T | ** | |||||||
10956210-CA-C | ** | |||||||
10960540-C-A | ** | |||||||
10978756-T-A | ** | |||||||
11033265-C-A | ** | |||||||
13194279-GCTTTCCTTTCC-G | 11038603-GCTTTCCTTTCC-G | ** | ||||||
13215179-C-A | 11059503-C-A | ** | ||||||
13328833-C-T | 11173157-C-T | ** | ||||||
13453597-C-A | 11297921-C-A | BY85385 | ** | |||||
13489190-G-T | 11333514-G-T | ** | ||||||
13491234-C-A | 11335558-C-A | ** | ||||||
13496389-C-T | 11340713-C-T | ** | ||||||
13694073-C-T | 11538397-C-T | FT124717 | ** | |||||
11651414-T-A | ** | |||||||
13835097-A-C | 11714391-A-C | ** | ||||||
13848102-C-A | 11727396-C-A | ** | ||||||
14067924-T-C | 11947218-T-C | ** | ||||||
14068453-T-G | 11947747-T-G | ** | ||||||
14073551-G-A | 11952845-G-A | FT195893 | ** | |||||
14105713-C-A | 11985007-C-A | ** | ||||||
14213838-G-A | 12093132-G-A | ** | ||||||
14278733-G-T | 12158027-G-T | ** | ||||||
14293775-A-G | 12173069-A-G | ** | ||||||
14459204-T-C | 12338477-T-C | ** | ||||||
14469765-G-T | 12349034-G-T | ** | ||||||
14513451-C-A | 12401656-C-A | ** | ||||||
14549236-G-T | 12437437-G-T | ** | ||||||
14614237-C-T | 12502435-C-T | ** | ||||||
14693908-G-A | 12581974-G-A | ** | ||||||
14821069-C-A | 12709136-C-A | ** | ||||||
14839306-C-A | 12727373-C-A | ** | ||||||
14888245-T-TTTG | 12776311-T-TTTG | ** | ||||||
14934832-C-A | 12822897-C-A | ** | ||||||
15074469-C-A | 12962559-C-A | ** | ||||||
15126499-TTATGTTTGTTAG-T | 13014586-TTATGTTTGTTAG-T | ** | ||||||
15167930-C-A | 13056016-C-A | ** | ||||||
15206100-T-C | 13094186-T-C | ** | ||||||
15235400-G-A | 13123486-G-A | ** | ||||||
15313839-C-A | 13201944-C-A | ** | ||||||
15353911-A-G | 13242030-A-G | ** | ||||||
15434294-C-A | 13322414-C-A | ** | ||||||
15476069-T-C | 13364189-T-C | ** | ||||||
15478022-G-T | 13366142-G-T | ** | ||||||
15480438-T-TC | 13368558-T-TC | ** | ||||||
15503108-C-A | 13391228-C-A | ** | ||||||
15504977-C-T | 13393097-C-T | ** | ||||||
15621177-TGCTTTGG-T | 13509297-TGCTTTGG-T | ** | ||||||
15660975-A-T | 13549095-A-T | ** | ||||||
15660979-C-T | 13549099-C-T | ** | ||||||
15660984-T-A | 13549104-T-A | ** | ||||||
15660991-A-T | 13549111-A-T | ** | ||||||
15660997-A-G | 13549117-A-G | ** | ||||||
15669840-G-A | 13557960-G-A | ** | ||||||
15669861-G-T | 13557981-G-T | ** | ||||||
15669864-GC-G | 13557984-GC-G | ** | ||||||
15831408-C-A | 13719528-C-A | ** | ||||||
16017850-T-G | 13905970-T-G | ** | ||||||
16017879-A-C | 13905999-A-C | ** | ||||||
16017884-T-G | 13906004-T-G | ** | ||||||
16171071-C-A | 14059191-C-A | ** | ||||||
16339127-G-A | 14227247-G-A | ** | ||||||
16458142-C-A | 14346262-C-A | ** | ||||||
16526542-G-C | 14414662-G-C | ** | ||||||
16529711-C-A | 14417831-C-A | ** | ||||||
16555306-C-A | 14443426-C-A | ** | ||||||
16761658-C-A | 14649778-C-A | ** | ||||||
16763934-A-G | 14652054-A-G | ** | ||||||
16781275-G-A | 14669395-G-A | FT201801 | ** | |||||
16781499-C-A | 14669619-C-A | ** | ||||||
16784251-A-T | 14672371-A-T | ** | ||||||
16784248-CAA-C | 14672368-CAA-C | ** | ||||||
16784262-A-G | 14672382-A-G | ** | ||||||
16784273-C-T | 14672393-C-T | ** | ||||||
16784275-G-T | 14672395-G-T | ** | ||||||
16813958-C-A | 14702078-C-A | ** | ||||||
16849548-C-A | 14737668-C-A | ** | ||||||
16918894-T-C | 14807014-T-C | ** | ||||||
17046852-C-A | 14934972-C-A | ** | ||||||
17150899-T-A | 15039019-T-A | ** | ||||||
17191375-C-A | 15079495-C-A | ** | ||||||
17216039-G-A | 15104159-G-A | ** | ||||||
17333991-C-T | 15222111-C-T | ** | ||||||
17360103-C-A | 15248223-C-A | ** | ||||||
17739803-C-A | 15627923-C-A | ** | ||||||
17793220-C-A | 15681340-C-A | ** | ||||||
17860777-G-T | 15748897-G-T | ** | ||||||
18022559-A-G | 15910679-A-G | ** | ||||||
18082894-C-A | 15971014-C-A | ** | ||||||
18146527-C-A | 16034647-C-A | ** | ||||||
18166284-C-A | 16054404-C-A | ** | ||||||
18204984-A-C | 16093104-A-C | ** | ||||||
18254153-A-C | 16142273-A-C | ** | ||||||
18284660-C-A | 16172780-C-A | P6_Prx | ** | |||||
18406531-C-A | 16294651-C-A | P6_Gap | ** | |||||
18564955-T-G | 16453075-T-G | ** | ||||||
18708372-C-CA | 16596492-C-CA | 9×A | ** | |||||
18724756-C-A | 16612876-C-A | ** | ||||||
18726691-G-T | 16614811-G-T | ** | ||||||
18806200-C-A | 16694320-C-A | ** | ||||||
18826977-C-A | 16715097-C-A | ** | ||||||
18868889-C-A | 16757009-C-A | ** | ||||||
18880269-A-G | 16768389-A-G | ** | ||||||
18890963-C-A | 16779083-C-A | ** | ||||||
18904400-A-G | 16792520-A-G | ** | ||||||
18923818-A-G | 16811938-A-G | ** | ||||||
18923825-G-A | 16811945-G-A | ** | ||||||
18923841-A-G | 16811961-A-G | ** | ||||||
18923850-G-C | 16811970-G-C | ** | ||||||
18923852-C-T | 16811972-C-T | ** | ||||||
18923859-A-G | 16811979-A-G | ** | ||||||
18923874-G-A | 16811994-G-A | FTB19462 | ** | |||||
19014001-G-T | 16902121-G-T | ** | ||||||
19056397-T-A | 16944517-T-A | ** | ||||||
19308403-C-A | 17196523-C-A | ** | ||||||
19342513-C-A | 17230633-C-A | ** | ||||||
19409838-C-A | 17297958-C-A | ** | ||||||
19464053-C-T | 17352173-C-T | ** | ||||||
20700712-TG-T | 18538826-TG-T | P4_Prx | ** | |||||
20747564-T-C | 18585678-T-C | P4_Prx | ** | |||||
21113126-G-T | 18951240-G-T | ** | ||||||
21218958-T-G | 19057072-T-G | ** | ||||||
21218969-T-TAC | 19057083-T-TAC | ** | ||||||
21240749-C-A | 19078863-C-A | ** | ||||||
21244245-T-C | 19082359-T-C | ** | ||||||
21400116-C-A | 19238230-C-A | ** | ||||||
21408189-A-G | 19246303-A-G | FT105954 | ** | |||||
21486974-G-A | 19325088-G-A | ** | ||||||
21756945-A-AT | 19595059-A-AT | ** | ||||||
21880833-G-A | 19718947-G-A | ** | ||||||
22034988-C-A | 19873102-C-A | ** | ||||||
22103457-T-C | 19941571-T-C | ** | ||||||
22359487-A-T | 20197601-A-T | DYZ19 | ** | |||||
22359488-A-T | 20197602-A-T | DYZ19 | ** | |||||
22359522-T-A | 20197636-T-A | DYZ19 | ** | |||||
22426929-T-C | 20265043-T-C | DYZ19 | ** | |||||
22645784-C-A | 20483898-C-A | ** | ||||||
22835524-C-A | 20673638-C-A | ** | ||||||
22950298-G-A | 20788412-G-A | ** | ||||||
23199750-C-T | 21037864-C-T | ** | ||||||
23392164-G-A | 21230278-G-A | ** | ||||||
23420756-C-A | 21258870-C-A | ** | ||||||
23425473-C-T | 21263587-C-T | ** | ||||||
23425474-C-G | 21263588-C-G | ** | ||||||
23447070-C-A | 21285184-C-A | ** | ||||||
23475803-C-T | 21313917-C-T | ** | ||||||
24050268-A-G | 21904121-A-G | P3_b1 | ** | |||||
24076394-G-T | 21930247-G-T | P3_b1 | ** | |||||
24972665-A-G | 22826518-A-G | g1 | ** | |||||
25586881-T-G | 23440734-T-G | P1_gr1 | ** | |||||
28763732-G-T | 26617585-G-T | FT285315 | ** | |||||
28764277-C-A | 26618130-C-A | ** | ||||||
56834817-C-G | ** | |||||||
56836739-CATTAA-C | ** | |||||||
56846818-G-T | ** | |||||||
13459293-C-A | 11303617-C-A | *** | ||||||
23013378-A-AT | 20851492-A-AT | Y31721 | 9×T | *** | ||||
17105356-TA-T | 14993476-TA-T | 9×A | *** | |||||
18126522-T-TA | 16014642-T-TA | 8×A | *** | |||||
17279494-G-GT | 15167614-G-GT | 10×T | *** | |||||
15874245-T-C | 13762365-T-C | *** | ||||||
18679925-CAAAAAAA-C | 16568045-CAAAAAAA-C | 25×A | *** | |||||
21139776-TA-T | 18977890-TA-T | 9×A | *** | |||||
58972876-G-A | 56826729-G-A | 4×TCCAT | *** | |||||
7698085-C-A | 7830044-C-A | FGC14815 | *** | |||||
6349176-C-CT | 6481135-C-CT | 12×T | *** | |||||
58980059-C-A | 56833912-C-A | *** | ||||||
2707575-G-GA | 2839534-G-GA | 10×A | *** | |||||
21503994-AT-A,ATT | 19342108-AT-A,ATT | 19×T | *** | |||||
10682552-C-CAGTAA | *** | |||||||
7142771-C-A | 7274730-C-A | *** | ||||||
17867901-CTT-C | 15756021-CTT-C | 14×T | *** | |||||
56831889-A-G | *** | |||||||
13856748-G-T | 11736042-G-T | *** | ||||||
9008606-AT-A | 9170997-AT-A | 10×T | *** | |||||
10785293-C-CAGGTTA | *** | |||||||
9842582-GTT-G | 10004973-GTT-G | 14×T | *** | |||||
15562703-GAA-G,GA | 13450823-GAA-G,GA | 17×A | *** | |||||
6816475-C-A | 6948434-C-A | *** | ||||||
10999897-T-A | *** | |||||||
21677663-C-A | 19515777-C-A | *** | ||||||
13856785-A-G,T | 11736079-A-G,T | *** | ||||||
7863647-G-T | 7995606-G-T | *** | ||||||
10682512-C-CACACG | *** | |||||||
22561830-G-GTT | 20399944-G-GTT | 13×T | *** | |||||
19010482-CA-C,CAA | 16898602-CA-C,CAA | 14×A | *** | |||||
10682535-T-C | *** | |||||||
18108457-C-CTT | 15996577-C-CTT | 13×T | *** | |||||
9029736-CT-C,CTT | 9192127-CT-C,CTT | 16×T | *** | |||||
8718869-C-A | 8850828-C-A | *** | ||||||
9847289-ATTTT-A,ATTTTT | 10009680-ATTTT-A,ATTTTT | 28×T | *** | |||||
17271294-C-A | 15159414-C-A | *** | ||||||
10682486-C-A | *** | |||||||
9960949-C-A | 10123340-C-A | *** | ||||||
16705406-C-T | 14593526-C-T | FT34978 FTB81899 | *** | |||||
18900223-C-A | 16788343-C-A | *** | ||||||
2750910-C-A | 2882869-C-A | *** | ||||||
18083848-C-A | 15971968-C-A | *** | ||||||
22899724-TTTTG-T | 20737838-TTTTG-T | 4×TTTG | *** | |||||
13991959-GA-G | 11871253-GA-G | *** | ||||||
2752755-G-A | 2884714-G-A | *** | ||||||
2753694-C-A | 2885653-C-A | *** | ||||||
2783734-C-CAAA | 2915693-C-CAAA | 15×A | *** | |||||
4114286-C-A | 4246245-C-A | *** | ||||||
4701205-C-T | 4833164-C-T | *** | ||||||
6513978-C-A | 6645937-C-A | *** | ||||||
6814396-G-T | 6946355-G-T | *** | ||||||
6930216-G-A | 7062175-G-A | *** | ||||||
7515404-A-G | 7647363-A-G | *** | ||||||
7692602-C-A | 7824561-C-A | *** | ||||||
7752918-C-A | 7884877-C-A | *** | ||||||
7868546-C-A | 8000505-C-A | *** | ||||||
8103063-C-A | 8235022-C-A | *** | ||||||
8107489-C-A | 8239448-C-A | *** | ||||||
8157482-TG-T | 8289441-TG-T | *** | ||||||
8221228-CT-C,CTT | 8353187-CT-C,CTT | 16×T | *** | |||||
8387551-A-G | 8519510-A-G | *** | ||||||
8555956-G-T | 8687915-G-T | *** | ||||||
8706279-C-A | 8838238-C-A | *** | ||||||
8806806-T-A | 8938765-T-A | *** | ||||||
9510875-C-A | 9673266-C-A | *** | ||||||
9773861-C-A | 9936252-C-A | *** | ||||||
9812408-T-C | 9974799-T-C | FT101471 | *** | |||||
9954631-G-A | 10117022-G-A | *** | ||||||
10023914-T-C | 10186305-T-C | *** | ||||||
10682508-A-ATTACG | *** | |||||||
10826883-C-G | *** | |||||||
10999896-T-A | *** | |||||||
10999920-A-G | *** | |||||||
13449439-C-A | 11293763-C-A | *** | ||||||
13459545-C-GTGTTA | 11303869-C-GTGTTA | *** | ||||||
13656336-G-A | 11500660-G-A | *** | ||||||
14639749-C-A | 12527818-C-A | *** | ||||||
14955111-C-A | 12843186-C-A | *** | ||||||
14980831-CTTTT-C | 12868907-CTTTT-C | 15×T | *** | |||||
15106372-A-G | 12994460-A-G | *** | ||||||
15110309-T-A | 12998396-T-A | *** | ||||||
15116279-G-T | 13004366-G-T | *** | ||||||
15200992-C-A | 13089078-C-A | *** | ||||||
16428423-C-A | 14316543-C-A | *** | ||||||
16819849-C-A | 14707969-C-A | *** | ||||||
16869877-C-A | 14757997-C-A | *** | ||||||
16907177-C-A | 14795297-C-A | *** | ||||||
17190489-C-A | 15078609-C-A | *** | ||||||
17235209-A-G | 15123329-A-G | *** | ||||||
17305221-C-A | 15193341-C-A | *** | ||||||
17356547-C-A | 15244667-C-A | *** | ||||||
17513116-C-A | 15401236-C-A | *** | ||||||
17715933-C-A | 15604053-C-A | *** | ||||||
18003789-C-A | 15891909-C-A | P7_Gap | *** | |||||
18007659-C-A | 15895779-C-A | P7_Gap | *** | |||||
18122051-C-A | 16010171-C-A | *** | ||||||
18698709-C-T | 16586829-C-T | *** | ||||||
18802163-C-A | 16690283-C-A | *** | ||||||
18954280-C-A | 16842400-C-A | *** | ||||||
19003015-T-C | 16891135-T-C | *** | ||||||
19121218-C-A | 17009338-C-A | *** | ||||||
19212186-GA-G | 17100306-GA-G | *** | ||||||
19391644-C-A | 17279764-C-A | *** | ||||||
19400336-G-T | 17288456-G-T | *** | ||||||
19497932-C-A | 17386052-C-A | *** | ||||||
21071153-C-T | 18909267-C-T | FGC44101 | *** | |||||
21443233-T-C | 19281347-T-C | *** | ||||||
21592634-TAAA-T | 19430748-TAAA-T | 14×A | *** | |||||
21648808-C-A | 19486922-C-A | *** | ||||||
21701379-GA-G | 19539493-GA-G | 8×A | *** | |||||
21985922-A-G | 19824036-A-G | *** | ||||||
22039521-T-C | 19877635-T-C | *** | ||||||
22099934-TGCTG-T | 19938048-TGCTG-T | *** | ||||||
22180397-C-A | 20018511-C-A | *** | ||||||
22184619-C-A | 20022733-C-A | *** | ||||||
22200626-C-A | 20038740-C-A | *** | ||||||
22208446-C-A | 20046560-C-A | *** | ||||||
22590321-C-T | 20428435-C-T | *** | ||||||
22773276-C-A | 20611390-C-A | *** | ||||||
22785555-T-C | 20623669-T-C | *** | ||||||
22804251-A-G | 20642365-A-G | *** | ||||||
23256163-CAAAGCCTGCAAG-C | 21094277-CAAAGCCTGCAAG-C | *** | ||||||
23306729-C-A | 21144843-C-A | *** | ||||||
23351311-G-A | 21189425-G-A | *** | ||||||
23393714-C-A | 21231828-C-A | *** | ||||||
56844496-TAACTC-T,TAACTG | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.