Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > ZZ44 > ZZ46 > FGC11293 > BY64238

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
788839
22224448-A-G 20062562-A-G DYZ19 A*
22313027-G-A 20151141-G-A BY22472 DYZ19 A*
22224447-C-T 20062561-C-T DYZ19 A*
6815234-C-A 6947193-C-A YYA*
22274474-C-A 20112588-C-A DYZ19 A*
8288269-AG-A 8420228-AG-A +
9813996-C-A 9976387-C-A BY184039 YY+
18711174-G-A 16599294-G-A YY+
22272175-C-T 20110289-C-T BY183882 DYZ19 +
22272144-G-A 20110258-G-A BY183881 DYZ19 +
22271041-G-A 20109155-G-A BY12916 DYZ19 +
21898316-A-G 19736430-A-G BY184256 YY+
16794665-C-A 14682785-C-A BY184134 YY+
21894187-G-A 19732301-G-A BY184255 YY+
16818872-T-C 14706992-T-C BY184136 YY+
9744189-C-T 9906580-C-T BY184036 +
9807284-T-G 9969675-T-G BY184038 YY+
21300731-C-T 19138845-C-T BY184236 YY+
9494619-T-C 9657010-T-C BY184032 +
6931680-A-T 7063639-A-T BY183917 YY+
6948648-C-T 7080607-C-T BY183920 YY+
8610868-A-T 8742827-A-T BY184006 YY+
18083732-T-A 15971852-T-A BY184179 YY+
7554291-C-T 7686250-C-T BY65864 YY+
18106523-A-G 15994643-A-G BY184182 YY+
7906386-C-T 8038345-C-T BY183967 YY+
22272992-C-A 20111106-C-A BY215504 DYZ19 +
22272990-C-A 20111104-C-A BY215503 DYZ19 +
22944540-G-A 20782654-G-A BY184284 YY+
27952091-GTATATATATATATATATATATATA-G 25805944-GTATATATATATATATATATATATA-G P1_Y2 19×TA+
2687684-T-C 2819643-T-C BY183889 YY+
13852345-T-C 11731639-T-C BY184046 +
23812026-G-A 21650140-G-A BY184318 Y+
13837777-G-A 11717071-G-A BY166761 +
22319536-G-A 20157650-G-A DYZ19 *
3991945-A-AAC 4123904-A-AAC 12×AC***
6104108-T-G 6236067-T-G *
13455498-GCATTC-G 11299822-GCATTC-G 4×CATTC**
13507019-G-C 11351343-G-C **
9453936-G-C 9616327-G-C **
9453931-G-T 9616322-G-T **
9041043-AT-A 9203434-AT-A **
9453923-G-T 9616314-G-T **
9735443-G-T 9897834-G-T IR3_Prx **
9019027-T-C 9181418-T-C **
13845359-C-T 11724653-C-T FGC6053 **
8349245-C-A 8481204-C-A **
14076566-C-A 11955860-C-A **
14221314-C-A 12100608-C-A **
8344071-T-G 8476030-T-G **
9672597-G-T 9834988-G-T IR3_Prx **
11003700-T-C **
13350302-G-T 11194626-G-T **
10823642-C-A **
10748011-C-CGG **
10682583-A-G **
10682566-C-T **
10800583-TG-T **
10800586-A-AC **
10800601-A-T **
10803781-C-A **
10876823-A-G **
13253281-A-C 11097605-A-C **
10678052-C-A **
10937693-T-G **
10937698-T-G **
10013638-C-T 10176029-C-T **
9994601-C-A 10156992-C-A **
9936333-C-T 10098724-C-T **
10998804-C-A **
10800581-A-C **
56870791-T-G **
6956541-C-A 7088500-C-A **
8154077-C-A 8286036-C-A **
3334522-C-T 3466481-C-T **
5309630-C-G 5441589-C-G **
5246548-C-A 5378507-C-A **
5132533-T-C 5264492-T-C **
4868367-C-T 5000326-C-T **
4075839-G-A 4207798-G-A **
3863921-G-T 3995880-G-T **
3847290-T-G 3979249-T-G **
3845217-T-C 3977176-T-C **
3409607-C-G 3541566-C-G **
3279630-C-T 3411589-C-T **
5519482-G-T 5651441-G-T **
3279624-G-A 3411583-G-A **
3279623-A-G 3411582-A-G **
3279596-G-C 3411555-G-C **
3196449-C-A 3328408-C-A **
3132119-T-G 3264078-T-G **
3132114-C-A 3264073-C-A **
3103238-A-G 3235197-A-G **
3063541-A-G 3195500-A-G **
2724611-TTTTTG-T 2856570-TTTTTG-T **
5494752-A-T 5626711-A-T **
5675402-T-C 5807361-T-C **
8045243-C-A 8177202-C-A **
6888524-G-T 7020483-G-T **
7765450-C-A 7897409-C-A **
7334166-T-A 7466125-T-A **
7238380-C-G 7370339-C-G **
7216553-T-C 7348512-T-C **
7101003-G-C 7232962-G-C **
7012779-T-C 7144738-T-C **
6996697-T-A 7128656-T-A **
14564146-C-T 12452346-C-T **
6934674-T-C 7066633-T-C **
6778379-C-T 6910338-C-T **
5778620-G-T 5910579-G-T **
6778302-G-T 6910261-G-T **
6763440-C-A 6895399-C-A **
6757022-G-C 6888981-G-C **
6634143-G-T 6766102-G-T **
6634135-T-G 6766094-T-G **
6404814-G-T 6536773-G-T **
6347871-A-G 6479830-A-G **
6149263-CTTTG-C 6281222-CTTTG-C IR3_Dst **
5819226-C-A 5951185-C-A **
5785751-T-A 5917710-T-A **
14317948-C-A 12197242-C-A **
15192620-T-G 13080706-T-G **
14765668-C-A 12653737-C-A **
21266675-C-A 19104789-C-A **
22065237-C-A 19903351-C-A **
21895560-C-A 19733674-C-A **
21682208-A-AT 19520322-A-AT **
21591205-C-A 19429319-C-A **
21540943-G-A 19379057-G-A **
21428758-CCATATT-C 19266872-CCATATT-C **
21405881-A-G 19243995-A-G **
21400048-A-G 19238162-A-G **
21382256-C-A 19220370-C-A FGC65924 **
21255097-C-A 19093211-C-A **
22720498-TA-T 20558612-TA-T **
21111519-T-C 18949633-T-C **
21015036-T-G 18853150-T-G P4_Dst **
20842576-GAA-G 18680690-GAA-G P4_Dst **
20409664-T-C 18247778-T-C P5_Dst **
19966558-AAGAAGAAGG-A 17854678-AAGAAGAAGG-A P5_Prx **
19922373-G-T 17810493-G-T P5_Prx **
19460803-C-A 17348923-C-A **
19451805-C-A 17339925-C-A **
19411969-A-C 17300089-A-C **
19393407-CA-C 17281527-CA-C **
22720494-C-T 20558608-C-T **
22720508-AAC-A 20558622-AAC-A **
19201047-G-A 17089167-G-A **
24872761-G-T 22726614-G-T P3_b2 **
28594206-C-A 26448059-C-A **
28558481-A-T 26412334-A-T **
28558480-C-T 26412333-C-T **
28479885-C-A 26333738-C-A **
28390918-G-T 26244771-G-T P1_gr2 **
28063777-G-T 25917630-G-T P1_Y2 **
27872577-C-T 25726430-C-T P1_Y2 **
25861009-C-A 23714862-C-A P1_Y1 **
25201035-AAAG-A 23054888-AAAG-A g1 **
24415923-C-A 22269776-C-A **
22829638-C-A 20667752-C-A **
24371882-G-T 22225735-G-T **
23391624-A-G 21229738-A-G **
23391622-C-G 21229736-C-G **
23391596-TC-T 21229710-TC-T **
23391585-G-A 21229699-G-A **
23146021-G-A 20984135-G-A **
23044747-T-A 20882861-T-A **
22991412-C-A 20829526-C-A **
22962227-A-G 20800341-A-G **
22962226-C-T 20800340-C-T **
19340260-A-C 17228380-A-C **
19199257-C-A 17087377-C-A **
14786312-CT-C 12674382-CT-C **
15361269-A-C 13249389-A-C **
16424336-C-T 14312456-C-T **
16295583-C-A 14183703-C-A **
16184381-C-A 14072501-C-A **
16171111-T-G 14059231-T-G **
15937407-C-A 13825527-C-A **
15793104-C-A 13681224-C-A **
15664038-ACAC-A 13552158-ACAC-A **
15439143-C-A 13327263-C-A **
15435604-G-T 13323724-G-T **
15201296-A-C 13089382-A-C **
16636901-A-G 14525021-A-G **
2683413-C-A 2815372-C-A **
14993142-T-C 12881227-T-C **
14981609-C-A 12869685-C-A **
14950500-T-TG 12838574-T-TG **
14950496-C-T 12838570-C-T **
14934407-CT-C 12822472-CT-C **
14912659-C-A 12800726-C-A **
14901286-C-A 12789353-C-A **
14889108-G-A 12777174-G-A **
14849121-C-A 12737187-C-A **
16532906-C-T 14421026-C-T BY108437 **
16694367-C-A 14582487-C-A **
19155272-C-T 17043392-C-T **
17676134-C-T 15564254-C-T **
19075423-G-A 16963543-G-A **
18953087-T-G 16841207-T-G **
18875014-C-G 16763134-C-G **
18820648-C-A 16708768-C-A **
18544933-C-A 16433053-C-A **
18255952-G-T 16144072-G-T **
17987122-C-A 15875242-C-A P7_Prx **
17944146-A-G 15832266-A-G **
17943988-AT-A 15832108-AT-A **
17803292-C-A 15691412-C-A **
17676124-A-C 15564244-A-C **
16734834-C-A 14622954-C-A **
17589242-C-A 15477362-C-A **
17479327-G-T 15367447-G-T **
17310865-G-T 15198985-G-T **
17302339-C-A 15190459-C-A **
17278044-A-G 15166164-A-G **
17027658-C-A 14915778-C-A **
16957770-TATATAC-T 14845890-TATATAC-T **
16955925-T-C 14844045-T-C **
16876984-T-A 14765104-T-A **
16823717-C-G 14711837-C-G **
2683438-C-T 2815397-C-T **
4374403-A-G 4506362-A-G **
7418073-CAAAAAA-C 7550032-CAAAAAA-C 22×A**
10878271-T-C **
9461859-G-T 9624250-G-T **
10754974-T-A **
13478319-C-A 11322643-C-A **
9123290-G-T **
10839553-TTTCCA-T **
11005435-C-T **
7106428-C-CA 7238387-C-CA **
23529731-C-A 21367845-C-A **
28814972-T-A 26668825-T-A **
10921123-T-A **
5785695-C-A 5917654-C-A **
10685086-C-A **
4871129-G-GC 5003088-G-GC 9×C**
16045265-C-A 13933385-C-A **
18966182-CTCCTTCCT-C 16854302-CTCCTTCCT-C 12×TCCT**
8160208-G-T 8292167-G-T **
7106420-A-G 7238379-A-G **
24631266-GT-G 22485119-GT-G P3_t2 **
8069959-ATTTT-A 8201918-ATTTT-A 19×T**
11003712-C-A **
11003131-T-C **
10821934-T-C **
10686611-C-G **
13507051-A-G 11351375-A-G **
10921137-A-C **
14735306-C-A 12623374-C-A **
10683491-G-T **
13705398-A-C 11549722-A-C **
10682582-C-T **
13715667-C-A 11559991-C-A **
16576919-C-A 14465039-C-A **
18762373-TA-T 16650493-TA-T 8×A**
6773342-C-A 6905301-C-A **
7142596-C-A 7274555-C-A **
23391587-A-C 21229701-A-C **
10821931-C-A **
11005532-C-A **
7108430-C-A 7240389-C-A **
14649699-C-A 12537764-C-A **
2683420-T-C 2815379-T-C **
2683414-C-T 2815373-C-T **
13507032-T-C 11351356-T-C **
17559821-A-T 15447941-A-T **
18762277-C-A 16650397-C-A **
16927640-C-A 14815760-C-A **
10949283-C-A **
10878381-C-T **
10987499-CACTA-C **
10987510-A-T **
28551787-G-T 26405640-G-T **
10987521-T-A **
10754934-C-T **
11015125-C-A **
10759908-T-G **
10759907-C-T **
10759884-G-A **
10878375-A-G **
15712234-C-A 13600354-C-A **
10921138-T-C **
11005495-CTCCAT-C **
10792769-A-T BY27027 **
13462335-A-G 11306659-A-G **
13462332-C-A 11306656-C-A **
6920648-C-A 7052607-C-A **
56835428-T-C **
21682197-A-G 19520311-A-G **
10686723-T-C **
10949270-A-T **
11038254-T-G **
16888602-A-AT 14776722-A-AT 9×T**
6922723-C-A 7054682-C-A **
18895607-A-G 16783727-A-G **
10748002-A-T **
15995178-C-A 13883298-C-A **
10686731-C-A **
10686706-C-CACTAA **
15323455-AAT-A 13211573-AAT-A **
13507006-G-A 11351330-G-A **
8160226-C-A 8292185-C-A **
10985284-A-T **
18008645-CTTT-C 15896765-CTTT-C P7_Dst 30×T**
13726119-T-C 11570443-T-C **
17305275-T-C 15193395-T-C **
10759913-T-G **
23454921-AT-A 21293035-AT-A 8×T**
15620411-C-A 13508531-C-A **
10759883-TGCACC-T **
10759874-A-T **
10682569-T-C **
10987490-ACTCCAC-A **
8793031-ATT-A 8924990-ATT-A 13×T**
10949280-C-T **
3015866-C-A 3147825-C-A **
10949315-C-T **
11653816-G-C **
4010236-C-A 4142195-C-A **
23391607-T-TC 21229721-T-TC **
10780300-C-A **
9453922-A-G 9616313-A-G **
19575949-C-T 17464069-C-T BY211840 P5_Prx 5×TCTT**
19274764-C-A 17162884-C-A **
7106431-T-C 7238390-T-C **
17961150-T-G 15849270-T-G **
21947234-C-T 19785348-C-T **
13435123-C-A 11279447-C-A **
18003161-C-A 15891281-C-A P7_Gap **
15772540-A-C 13660660-A-C **
10778263-A-T **
3279599-G-T 3411558-G-T **
10778336-T-C **
14100439-C-A 11979733-C-A **
7195278-T-A 7327237-T-A **
14379497-C-A 12258793-C-A **
9172700-C-A 9335091-C-A **
10748030-C-G **
7008302-CAATAAT-C 7140261-CAATAAT-C 11×AAT**
2844011-G-T 2975970-G-T **
5246833-C-A 5378792-C-A **
7698390-TA-T 7830349-TA-T 8×A**
10754906-C-A **
18215674-C-A 16103794-C-A **
23391602-A-G 21229716-A-G **
9461860-C-T 9624251-C-T **
14592972-C-A 12481172-C-A **
17275628-C-A 15163748-C-A **
15749397-C-A 13637517-C-A **
23127608-CA-C 20965722-CA-C **
22797446-C-A 20635560-C-A **
9943376-C-A 10105767-C-A **
14254515-T-C 12133809-T-C **
24406181-T-C 22260034-T-C **
18890547-A-G 16778667-A-G **
14785713-C-T 12673783-C-T **
14785708-G-A 12673778-G-A **
13717510-G-A 11561834-G-A **
28027985-T-TAA 25881838-T-TAA P1_Y2 **
19422961-C-CTCT 17311081-C-CTCT **
10921127-A-G **
23044554-C-A 20882668-C-A **
13722268-G-T 11566592-G-T **
19049470-AAAT-A 16937590-AAAT-A 12×AAT**
21369401-C-A 19207515-C-A **
21623806-C-A 19461920-C-A **
10792773-C-A FGC82706 **
8163058-C-A 8295017-C-A **
14622790-C-A 12510988-C-A **
13507035-T-C 11351359-T-C **
23391621-A-C 21229735-A-C **
7142894-A-G 7274853-A-G FT1559 **
13478371-G-T 11322695-G-T **
16033377-C-A 13921497-C-A **
7107011-C-CTA 7238970-C-CTA 20×TA**
2683424-A-G 2815383-A-G **
18890545-G-A 16778665-G-A **
22962210-A-T 20800324-A-T **
23391612-T-C 21229726-T-C **
7199495-C-A 7331454-C-A **
14108920-C-A 11988214-C-A **
13988726-T-C 11868020-T-C **
10778301-C-A **
18465495-AGC-A 16353615-AGC-A P6_Dst **
10937709-G-C **
9108121-C-A **
6795268-CT-C 6927227-CT-C **
3848752-C-A 3980711-C-A **
10807040-CTCCAT-C **
16825142-C-A 14713262-C-A **
56828338-C-G **
17668506-GTT-G 15556626-GTT-G 10×T**
10778312-C-A **
22115103-G-A 19953217-G-A YSC0000272 **
22893464-C-T 20731578-C-T **
2702742-C-A 2834701-C-A **
14635751-A-C 12523820-A-C **
5785537-C-A 5917496-C-A **
10778298-A-G **
3279618-C-G 3411577-C-G **
18124739-C-A 16012859-C-A **
13447815-G-C 11292139-G-C ***
8607610-C-CT 8739569-C-CT 12×T***
16991073-GTT-G 14879193-GTT-G 13×T***
6458072-ATT-A 6590031-ATT-A 13×T***
23131212-C-A 20969326-C-A ***
23195586-CA-C 21033700-CA-C 10×A***
28776026-A-G 26629879-A-G ***
23608749-A-AT 21446863-A-AT 10×T***
21797554-C-A 19635668-C-A ***
22741474-C-A 20579588-C-A ***
8428944-CAAAAAAA-C 8560903-CAAAAAAA-C 25×A***
28547088-T-TA 26400941-T-TA 14×A***
18593579-A-G 16481699-A-G ZS9459 14×TG***
23042263-G-A 20880377-G-A ***
22068355-G-A 19906469-G-A ***
22165528-C-A 20003642-C-A ***
22979159-C-A 20817273-C-A ***
19045687-CTTTTT-C 16933807-CTTTTT-C 17×T***
22586393-C-A 20424507-C-A ***
13452081-T-A 11296405-T-A ***
13447807-G-T 11292131-G-T ***
24378369-C-A 22232222-C-A ***
21477198-C-CCTTCTT 19315312-C-CCTTCTT 9×CTT***
6444971-CAT-C 6576930-CAT-C ***
23088638-CT-C 20926752-CT-C ***
8016710-CA-C 8148669-CA-C 8×A***
23090782-C-A 20928896-C-A ***
15458262-C-A 13346382-C-A ***
21593754-G-T 19431868-G-T ***
8585510-C-A 8717469-C-A ***
12903343-CTTTTT-C,CTTTT 25×T***
7101772-T-TA 7233731-T-TA 10×A***
13453454-TATTCCATTCC-T 11297778-TATTCCATTCC-T 11×ATTCC***
13329306-G-T 11173630-G-T ***
8052243-C-A 8184202-C-A ***
10746939-G-A,T ***
10808600-C-A,T ***
9812271-G-A 9974662-G-A ***
9730738-C-A 9893129-C-A IR3_Prx ***
23576634-C-A 21414748-C-A ***
22919325-GTTTT-G 20757439-GTTTT-G 20×T***
15352172-C-A 13240291-C-A ***
8075463-C-A 8207422-C-A ***
7972157-C-A 8104116-C-A ***
7349626-T-C 7481585-T-C ***
19333229-ATTTTT-A 17221349-ATTTTT-A 21×T***
8117294-G-T 8249253-G-T ***
9380978-C-A 9543369-C-A ***
15659928-TAA-T,TA 13548048-TAA-T,TA 15×A***
18616104-C-A 16504224-C-A ***
13865758-C-A 11745052-C-A ***
19233984-C-A 17122104-C-A FGC6679 ***
15252912-G-A 13140998-G-A ***
15423474-C-CA,CAA 13311594-C-CA,CAA 16×A***
21559365-C-A 19397479-C-A ***
18812355-CT-C 16700475-CT-C ***
21435556-C-A 19273670-C-A ***
21134769-A-T 18972883-A-T ***
21130557-C-A 18968671-C-A ***
21702045-C-CA 19540159-C-CA 10×A***
19441555-C-A 17329675-C-A ***
19418508-G-T 17306628-G-T ***
19410915-G-A 17299035-G-A ***
23792029-CTTT-C 21630143-CTTT-C 15×T***
18997388-T-C 16885508-T-C ***
15324319-CTTT-C,CTT 13212437-CTTT-C,CTT 25×T***
18807980-A-T 16696100-A-T ***
14294342-GA-G,GAA 12173636-GA-G,GAA 13×A***
18687904-C-A 16576024-C-A ***
17869326-ATTAACATTTAC-A 15757446-ATTAACATTTAC-A ***
17616568-C-A 15504688-C-A ***
11001495-G-A,T ***
8760517-CTTT-C,CT 8892476-CTTT-C,CT 20×T***
14825706-CT-C 12713773-CT-C 8×T***
16912748-G-A 14800868-G-A ***
16834393-C-A 14722513-C-A ***
16561246-C-A 14449366-C-A ***
16311444-T-C 14199564-T-C ***
9827264-A-AT 9989655-A-AT 10×T***
13869404-CGAATG-C 11748698-CGAATG-C 9×GAATG***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 788839869105371508947126745
Used in age calculations869105371508947126745
Counts of SNPs1819
Variant counts last updated 2019-09-27 04:16:18.



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