Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > BY25447 > BY13693

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B359338
23883136-A-T 21721250-A-T YA+
19909623-C-G 17797743-C-G P5_Prx A*
22294866-G-C 20132980-G-C DYZ19 A*
22318444-G-C 20156558-G-C DYZ19 A*
22438402-T-A 20276516-T-A DYZ19 A*
25908523-T-C 23762376-T-C P1_Y1 A*
26059286-A-G 23913139-A-G P1_Y1 A*
26318759-G-T 24172612-G-T P1_Y1 A*
7234097-ATG-A 7366056-ATG-A +
7305830-G-A 7437789-G-A BY182633 YY+
7760804-C-A 7892763-C-A BY182685 YY+
8103987-T-G 8235946-T-G BY182723 YY+
8210658-G-C 8342617-G-C BY182740 YY+
8480838-T-G 8612797-T-G BY182786 YY+
8631534-C-T 8763493-C-T BY182817 YY+
10005394-A-G 10167785-A-G Y+
13808760-G-C 11688054-G-C BY182939 +
13922049-G-C 11801343-G-C BY182950 YY+
14412619-A-G 12291916-A-G BY183008 YY+
15067528-C-T 12955619-C-T BY183060 YY+
15195310-C-T 13083396-C-T BY183065 YY+
15255124-G-A 13143210-G-A BY183074 YY+
16357695-C-A 14245815-C-A BY183175 YY+
16809864-T-G 14697984-T-G BY183213 YY+
17341076-T-C 15229196-T-C BY183275 YY+
17368694-T-C 15256814-T-C BY183279 YY+
17477124-T-C 15365244-T-C BY183292 YY+
18952813-A-G 16840933-A-G BY183434 YY+
19229608-G-A 17117728-G-A BY183469 YY+
19305525-C-G 17193645-C-G BY183479 YY+
21709415-G-A 19547529-G-A BY183576 YY+
21717769-G-C 19555883-G-C BY183578 YY+
21841429-T-C 19679543-T-C BY183595 Y+
22078703-G-T 19916817-G-T BY183625 YY+
22614712-C-G 20452826-C-G BY183662 Y+
22825144-C-T 20663258-C-T BY183694 YY+
23208451-T-A 21046565-T-A BY183743 Y+
23324011-A-G 21162125-A-G BY183756 YY+
23325590-G-C 21163704-G-C BY183758 YY+
23526219-G-A 21364333-G-A BY183777 YY+
23835591-T-C 21673705-T-C BY183810 Y+
23992740-A-G 21846593-A-G BY183821 +
14191-A-T +
18156-C-G +
22432298-G-T 20270412-G-T BY7444 DYZ19 *
22422210-G-C 20260324-G-C DYZ19 *
9902379-T-TC 10064770-T-TC *
22312640-C-T 20150754-C-T DYZ19 *
22318462-G-C 20156576-G-C BY217358 DYZ19 *
22318621-G-T 20156735-G-T DYZ19 *
22340815-T-C 20178929-T-C DYZ19 *
13714050-T-A 11558374-T-A **
58973008-C-A 56826861-C-A **
13855938-A-T 11735232-A-T **
18034589-C-T 15922709-C-T CTS8450 S4387 **
13579531-CAAA-C 11423855-CAAA-C 23×A**
6634275-G-T 6766234-G-T **
13453187-T-G 11297511-T-G **
26730201-AAAAGAAAGAAAGAAAG-A 24584054-AAAAGAAAGAAAGAAAG-A P1_g2 18×AAAG**
8333525-C-G 8465484-C-G FGC47135 **
22287082-A-G 20125196-A-G DYZ19 **
13457738-T-C 11302062-T-C **
58979297-C-G 56833150-C-G **
13484336-C-A 11328660-C-A **
13588182-GCACA-G 11432506-GCACA-G 14×CA**
10987983-C-G **
10987990-A-G **
10987994-A-T **
21488775-C-A 19326889-C-A **
6401411-C-A 6533370-C-A **
11643716-A-G **
18465469-G-GA 16353589-G-GA P6_Dst 26×A**
56833129-C-G **
10657381-A-G **
22775377-C-A 20613491-C-A **
10761814-C-A **
11643683-G-T **
11643692-T-C **
11643706-A-T **
6461561-C-A 6593520-C-A **
26358744-G-T 24212597-G-T P1_Y1 **
5824298-C-A 5956257-C-A **
10987934-C-T **
10987940-C-T **
10987946-A-T **
10987957-T-TCCA **
10987971-C-T FT439329 **
20579311-C-T 18417425-C-T P5_Dst **
10748289-T-A **
10969265-C-A **
3790922-G-A 3922881-G-A **
9141868-C-A 9304259-C-A **
10748216-G-C **
2806226-TTTTTTAG-T 2938185-TTTTTTAG-T **
8288867-C-A 8420826-C-A **
4213182-C-A 4345141-C-A **
8288850-G-T 8420809-G-T **
13896347-C-A 11775641-C-A **
21754374-G-T **
10760402-T-TCCAC **
23609934-C-A 21448048-C-A **
13474035-C-A 11318359-C-A **
7131975-G-A 7263934-G-A **
20500944-A-AC 18339058-A-AC P5_Dst **
14089903-C-A 11969197-C-A **
22204450-C-T 20042564-C-T FT284473 **
14586179-G-T 12474379-G-T **
10893374-T-A **
9926734-C-A 10089125-C-A **
11643721-A-T **
24611460-GT-G 22465313-GT-G P3_t2 **
10986909-C-T **
10748261-C-G **
6709078-C-A 6841037-C-A **
10869108-C-A **
5720730-C-A 5852689-C-A **
11030219-A-T **
56832132-C-A **
7248107-C-A 7380066-C-A **
10845642-T-G **
9172700-C-A 9335091-C-A **
14517286-C-A 12405487-C-A **
18462526-G-T 16350646-G-T P6_Dst **
13488845-C-CCA 11333169-C-CCA **
18717782-G-A 16605902-G-A **
10929385-G-T **
5817617-CT-C 5949576-CT-C **
4900736-G-T 5032695-G-T **
56829880-C-A **
16005499-C-A 13893619-C-A **
10987865-A-T **
9996448-C-A 10158839-C-A **
15921728-C-A 13809848-C-A **
23742191-C-A 21580305-C-A **
10987856-T-A **
22625024-C-A 20463138-C-A **
13462314-C-A 11306638-C-A **
10987833-CCA-C **
11030215-T-C **
11030248-G-C **
11030249-T-A **
11030255-A-C **
18188215-C-A 16076335-C-A **
5785410-C-A 5917369-C-A **
10969242-A-T **
25333891-G-T 23187744-G-T P2_r1 **
14224143-A-G 12103437-A-G **
16354250-C-A 14242370-C-A **
6337833-G-T 6469792-G-T IR3_Dst **
6337855-G-T 6469814-G-T IR3_Dst **
10893402-A-C **
10945968-T-C **
16092902-A-C 13981022-A-C **
4970100-G-T 5102059-G-T **
14639083-C-T 12527152-C-T **
14736149-T-C 12624217-T-C **
14101001-C-A 11980295-C-A **
13855957-C-A 11735251-C-A FT20706 **
6040332-C-A 6172291-C-A **
21754413-A-G **
28720033-G-A 26573886-G-A **
2759499-C-A 2891458-C-A **
14041049-C-A 11920343-C-A **
11667269-G-T FT390137 **
10807317-C-A **
10969275-C-T **
17014621-C-A 14902741-C-A **
16033674-C-A 13921794-C-A **
10982129-C-A **
14474723-C-A 12353992-C-A **
7028491-C-A 7160450-C-A **
13809773-G-T 11689067-G-T **
19048054-TAA-T 16936174-TAA-T **
16336918-TTTG-T 14225038-TTTG-T **
6992508-C-A 7124467-C-A **
18951600-T-G 16839720-T-G BY125050 **
11654428-G-A **
6114871-C-A 6246830-C-A **
10766344-T-A **
15177677-C-A 13065763-C-A **
15278961-C-A 13167060-C-A **
8790196-A-C 8922155-A-C **
10899812-G-T **
13453188-C-G 11297512-C-G **
23127824-C-A 20965938-C-A **
2812773-TATG-T 2944732-TATG-T **
2986275-A-C 3118234-A-C **
3177985-A-C 3309944-A-C **
3332050-C-A 3464009-C-A **
3609611-T-G 3741570-T-G **
3704448-C-A 3836407-C-A **
4144078-C-A 4276037-C-A **
4357180-T-C 4489139-T-C **
4634752-C-A 4766711-C-A **
4701138-C-T 4833097-C-T **
4928280-G-T 5060239-G-T **
5172215-G-A 5304174-G-A FT75160 **
5191208-C-A 5323167-C-A **
5458858-A-G 5590817-A-G FT110481 **
5829685-C-A 5961644-C-A **
5853536-G-T 5985495-G-T FTB85859 **
5888380-T-G 6020339-T-G **
6147536-C-A 6279495-C-A FT215194 IR3_Dst **
6384443-CATCCGT-C 6516402-CATCCGT-C **
6516225-CT-C 6648184-CT-C **
6630510-CTCTTT-C 6762469-CTCTTT-C **
6634292-G-T 6766251-G-T **
6693994-T-C 6825953-T-C **
7164502-GT-G 7296461-GT-G **
7188481-A-G 7320440-A-G **
7458570-T-A 7590529-T-A IR1_L **
8100667-A-C 8232626-A-C **
8735066-C-A 8867025-C-A **
9076773-T-C 9239164-T-C **
10657251-A-T **
10657282-T-TTAAAC **
10657294-C-A **
10657303-T-G **
10668608-C-A **
10672508-C-A **
10754968-A-T **
10969241-C-A **
13196442-T-G 11040766-T-G 4×TCCAC**
13213799-C-A 11058123-C-A **
13455553-C-A 11299877-C-A **
13456851-C-T 11301175-C-T **
13458751-C-CATCGA 11303075-C-CATCGA **
13714039-G-T 11558363-G-T **
11658687-G-T **
11669650-G-A **
13817362-G-T 11696656-G-T **
13855928-TCTAAA-T 11735222-TCTAAA-T **
13855940-A-G 11735234-A-G **
13855944-T-G 11735238-T-G **
13962294-C-A 11841588-C-A **
13963295-A-C 11842589-A-C **
14015450-C-A 11894744-C-A **
14041025-C-A 11920319-C-A **
14052948-G-A 11932242-G-A **
14284278-C-A 12163572-C-A **
14743026-C-A 12631094-C-A **
14792877-C-A 12680948-C-A **
15171455-T-C 13059541-T-C **
15187378-G-T 13075464-G-T **
15443665-C-A 13331785-C-A **
16052756-A-C 13940876-A-C **
16146534-A-C 14034654-A-C P8_Dst **
16345077-T-C 14233197-T-C **
16703879-C-A 14591999-C-A **
17276287-A-C 15164407-A-C **
17475195-C-A 15363315-C-A **
17567488-C-A 15455608-C-A **
18190748-C-T 16078868-C-T FT76893 **
18539549-T-C 16427669-T-C **
18951513-A-G 16839633-A-G **
19041538-G-T 16929658-G-T **
19062194-G-T 16950314-G-T **
19460669-G-A 17348789-G-A **
19517804-G-T 17405924-G-T **
19706877-C-A 17594997-C-A P5_Prx **
19930072-T-C 17818192-T-C P5_Prx **
20200600-TAGA-T 18038714-TAGA-T P5_Dst **
20596247-T-G 18434361-T-G P5_Dst **
21002576-A-T 18840690-A-T P4_Dst **
21386396-C-A 19224510-C-A **
22027818-T-G 19865932-T-G **
22060353-C-A 19898467-C-A **
22147178-A-T 19985292-A-T **
22309894-T-A 20148008-T-A DYZ19 **
22651298-A-C 20489412-A-C **
23186527-C-A 21024641-C-A **
23720931-A-T 21559045-A-T **
23720958-G-T 21559072-G-T **
24223335-C-A 22077188-C-A P3_b1 **
25446686-T-A 23300539-T-A P2_r2 **
25508264-C-A 23362117-C-A P1_gr1 **
28464106-T-G 26317959-T-G **
28734643-G-A 26588496-G-A **
56833155-C-CCATTGCATGA **
28030780-C-CT 25884633-C-CT P1_Y2 ***
58980945-T-G 56834798-T-G ***
28030783-C-CTTT,T 25884636-C-CTTT,T P1_Y2 ***
19436734-AAGAA-A,AAGAG 17324854-AAGAA-A,AAGAG ***
13488835-C-T 11333159-C-T ***
10789354-C-G ***
17385530-G-A 15273650-G-A ***
4930891-C-A 5062850-C-A ***
13485941-CAG-C 11330265-CAG-C ***
7228606-C-A 7360565-C-A ***
29710-T-C ***
56836690-G-T ***
3610056-C-A 3742015-C-A ***
2803508-C-A 2935467-C-A ***
7146776-GTTTT-G,GTTT 7278735-GTTTT-G,GTTT 18×T***
8673192-C-A 8805151-C-A ***
3986132-C-A 4118091-C-A ***
13459138-T-G 11303462-T-G ***
13459863-C-A 11304187-C-A ***
13463622-A-G 11307946-A-G ***
13489629-CCACCCA-C,CGAACC 11333953-CCACCCA-C,CGAACC ***
17707376-CA-C,CAA 15595496-CA-C,CAA 23×A***
18817868-C-A 16705988-C-A ***
23514417-G-T 21352531-G-T ***
56827008-CTTCCATTCAA-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.