Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > ZZ19

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
60897
6221583-A-C 6353542-A-C IR3_Dst A*
22308798-G-A 20146912-G-A DYZ19 A*
19693048-G-A 17581168-G-A P5_Prx A*
6151151-G-C 6283110-G-C IR3_Dst A*
20620505-G-A 18458619-G-A P4_Prx A*
18281883-G-A 16170003-G-A P6_Prx A*
26002355-G-A 23856208-G-A P1_Y1 A*
22286076-T-G 20124190-T-G DYZ19 A*
21759174-G-A 19597288-G-A YY+
21689744-G-T 19527858-G-T BY168376 YY+
8546352-T-C 8678311-T-C Y87227 YY+
22263822-T-G 20101936-T-G BY214778 DYZ19 +
19039790-G-C 16927910-G-C BY168009 YY+
14289161-C-A 12168455-C-A BY166857 YY+
14800855-A-AT 12688926-A-AT 8×T+
18383327-T-C 16271447-T-C BY167853 P6_Gap +
13203810-A-T 11048134-A-T BY209914 +
18079034-C-T 15967154-C-T BY167789 YY+
2658202-A-G 2790161-A-G BY165820 YY+
15355631-TA-T 13243750-TA-T 9×A+
15481467-T-C 13369587-T-C BY167076 YY+
17765880-C-T 15654000-C-T BY167682 YY+
15660478-C-A 13548598-C-A BY167127 YY+
17613692-C-G 15501812-C-G BY167642 YY+
17593674-G-T 15481794-G-T BY167632 YY+
15740313-C-T 13628433-C-T BY167153 Y+
17550496-AG-A 15438616-AG-A +
15934400-G-C 13822520-G-C BY167205 YY+
17321880-G-A 15210000-G-A BY167534 YY+
16790261-T-C 14678381-T-C BY167390 YY+
16710742-G-C 14598862-G-C BY167357 YY+
16669830-G-A 14557950-G-A YY+
16563340-C-T 14451460-C-T BY167329 YY+
22294489-T-G 20132603-T-G BY216550 DYZ19 +
9398833-T-C 9561224-T-C FGC7832 YY+
22444831-A-G 20282945-A-G DYZ19 +
9848881-T-C 10011272-T-C BY166726 YY+
8620913-T-G 8752872-T-G BY165696 br2 YY+
8387522-G-A 8519481-G-A BY209303 YY+
24391022-T-G 22244875-T-G BY168878 Y+
23344962-C-T 21183076-C-T BY168727 YY+
9905828-T-G 10068219-T-G BY166739 Y+
8483706-T-G 8615665-T-G BY166424 YY+
9160770-T-G 9323161-T-G BY166640 +
7571503-T-C 7703462-T-C FGC60552 YY+
22471769-T-C 20309883-T-C BY165765 DYZ19 +
8037937-T-C 8169896-T-C BY166276 YY+
22460714-G-T 20298828-G-T BY220597 DYZ19 +
22445271-A-T 20283385-A-T DYZ19 +
22445270-G-T 20283384-G-T DYZ19 +
22317129-G-T 20155243-G-T DYZ19 *
22335088-T-G 20173202-T-G DYZ19 *
22275242-G-A 20113356-G-A DYZ19 *
10691019-A-C **
15260854-TA-T 13148938-TA-T **
15361989-C-A 13250109-C-A **
15403596-T-C 13291716-T-C **
15429341-T-C 13317461-T-C **
10687649-G-T **
10691011-T-C **
16074507-C-A 13962627-C-A **
9935028-G-T 10097419-G-T **
15770482-G-T 13658602-G-T **
16114182-G-C 14002302-G-C P8_Prx **
16114183-T-C 14002303-T-C P8_Prx **
16114185-A-C 14002305-A-C P8_Prx **
16114186-T-C 14002306-T-C P8_Prx **
4237208-C-G 4369167-C-G **
16114188-A-C 14002308-A-C P8_Prx **
16114189-A-C 14002309-A-C P8_Prx **
16114236-G-T 14002356-G-T P8_Prx **
16114242-C-A 14002362-C-A P8_Prx **
15129955-C-A 13018042-C-A **
14590972-C-A 12479172-C-A **
10691044-A-G **
13320101-C-A 11164425-C-A **
10877778-C-T **
10905043-C-A **
10909782-G-T **
10932959-A-ACGCTC **
10971212-A-C **
10876839-T-C **
10866526-C-A **
10980169-G-T **
11014175-C-A **
11038102-C-G **
10855913-A-C **
10833075-TTGCAC-T **
16114244-G-T 14002364-G-T P8_Prx **
13406080-GT-G 11250404-GT-G **
10767932-A-G **
10771852-A-T **
13523732-A-G 11368056-A-G **
10771822-T-G **
13711735-A-G 11556059-A-G **
11653047-C-A **
13859091-A-G 11738385-A-G **
13932838-CA-C 11812132-CA-C **
14006709-G-T 11886003-G-T **
14104333-T-C 11983627-T-C **
14104343-C-G 11983637-C-G **
10771809-G-C **
14125099-C-A 12004393-C-A **
10767947-A-T **
14432043-T-A 12311316-T-A **
16114243-A-T 14002363-A-T P8_Prx **
17545788-G-C 15433908-G-C **
16114246-G-T 14002366-G-T P8_Prx **
22146301-T-C 19984415-T-C **
22875311-A-G 20713425-A-G **
22723378-C-A 20561492-C-A **
22690114-G-A 20528228-G-A **
22551136-A-G 20389250-A-G **
22220436-G-T 20058550-G-T DYZ19 **
22146306-C-T 19984420-C-T **
22070431-C-G 19908545-C-G **
22916853-A-G 20754967-A-G **
21815172-G-T 19653286-G-T **
21532702-C-A 19370816-C-A **
21354115-A-C 19192229-A-C **
21087009-C-A 18925123-C-A **
20833383-C-A 18671497-C-A P4_Gap **
20579298-C-CA 18417412-C-CA P5_Dst **
22902032-C-T 20740146-C-T **
23000008-T-C 20838122-T-C **
20473618-TGGAAG-T 18311732-TGGAAG-T P5_Dst **
23590979-A-T 21429093-A-T **
28609001-C-A 26462854-C-A **
26120062-A-T 23973915-A-T P1_Y1 **
26055586-C-G 23909439-C-G P1_Y1 **
24876969-A-T 22730822-A-T g1 **
23837084-C-A 21675198-C-A **
23775499-A-T 21613613-A-T **
23590969-G-A 21429083-G-A **
23030085-T-A 20868199-T-A **
23590958-T-C 21429072-T-C **
23590935-G-C 21429049-G-C **
23590900-A-C 21429014-A-C **
23514532-C-A 21352646-C-A **
23291443-C-A 21129557-C-A **
23232253-C-A 21070367-C-A **
20473635-GA-G 18311749-GA-G P5_Dst **
20473602-G-GTGA 18311716-G-GTGA P5_Dst **
16114252-A-AT 14002372-A-AT P8_Prx 11×TG**
17320016-AG-A 15208136-AG-A **
17871679-A-G 15759799-A-G **
17738042-C-A 15626162-C-A **
17588528-A-G 15476648-A-G **
9456684-C-A 9619075-C-A **
17491091-C-A 15379211-C-A **
17360965-C-A 15249085-C-A **
17320010-A-G 15208130-A-G **
17923086-G-A 15811206-G-A **
17293135-C-A 15181255-C-A **
17037312-C-A 14925432-C-A **
16562951-C-A 14451071-C-A **
16505513-C-A 14393633-C-A **
16118604-G-T 14006724-G-T P8_Prx **
16114256-G-T 14002376-G-T P8_Prx **
17923082-G-T 15811202-G-T **
17997802-G-T 15885922-G-T P7_Gap **
19966620-G-T 17854740-G-T P5_Prx **
19088628-T-A 16976748-T-A **
19479024-G-A 17367144-G-A **
19345932-C-A 17234052-C-A **
19303453-G-T 17191573-G-T **
19294986-C-A 17183106-C-A **
19249440-C-A 17137560-C-A **
19088632-G-C 16976752-G-C **
18996540-C-A 16884660-C-A **
18077620-T-TA 15965740-T-TA 8×A**
18966910-G-T 16855030-G-T **
18847934-C-A 16736054-C-A **
18786337-A-G 16674457-A-G **
18755098-T-G 16643218-T-G **
18222028-A-T 16110148-A-T **
18170645-C-T 16058765-C-T **
18143967-A-T 16032087-A-T **
9502554-T-C 9664945-T-C **
9865276-C-A 10027667-C-A **
9424380-C-G 9586771-C-G **
10679074-C-A **
10959456-C-CTAAAT **
10959454-C-T **
11037965-C-A **
10691030-T-C **
9807841-T-C 9970232-T-C **
23059103-C-A 20897217-C-A **
10959419-C-A **
10959475-A-C **
17337630-C-A 15225750-C-A **
17749272-C-A 15637392-C-A **
13457715-T-A 11302039-T-A **
10833022-C-G **
10833015-T-C **
10834208-T-C **
10959466-C-T **
10959479-C-T **
10834203-T-C **
9013206-C-A 9175597-C-A **
15870740-C-A 13758860-C-A **
22890230-T-G 20728344-T-G **
24445435-C-A 22299288-C-A **
10860183-C-A **
6967828-G-A 7099787-G-A **
8218187-G-T 8350146-G-T **
10947628-A-T **
18786342-A-G 16674462-A-G **
17050132-G-T 14938252-G-T **
20473648-A-G 18311762-A-G P5_Dst **
10955533-C-T **
9297174-G-C 9459565-G-C **
26120066-C-A 23973919-C-A P1_Y1 **
7155340-C-A 7287299-C-A **
6352510-G-T 6484469-G-T **
10834206-C-G **
10771859-C-G **
6700900-T-C 6832859-T-C **
8058623-AT-A 8190582-AT-A **
4302145-C-A 4434104-C-A **
11672860-C-A FT64450 **
21617600-C-A 19455714-C-A **
15777486-C-A 13665606-C-A **
23590954-G-C 21429068-G-C **
21505618-C-A 19343732-C-A **
10821436-A-C **
27127895-G-T 24981748-G-T P1_g3 **
10821434-T-C **
10821424-C-T **
7081053-C-A 7213012-C-A **
8468064-GCA-G 8600023-GCA-G **
13714256-G-A 11558580-G-A **
13714254-T-A 11558578-T-A **
13457689-T-G 11302013-T-G **
11015183-T-G **
18244476-C-A 16132596-C-A **
9500095-C-A 9662486-C-A **
10955525-C-A **
15364038-C-A 13252158-C-A **
19108497-C-A 16996617-C-A **
10767923-C-T **
10896168-C-A **
6403571-A-G 6535530-A-G **
14995671-C-A 12883756-C-A **
10834198-T-C **
15495460-CAAAAA-C 13383580-CAAAAA-C 16×A**
14812069-GAA-G 12700140-GAA-G 15×A**
10768697-C-A **
16270749-G-T 14158869-G-T **
21153604-G-T 18991718-G-T **
10821426-C-A **
10821416-C-G **
20473625-TGA-T 18311739-TGA-T P5_Dst **
4002874-C-A 4134833-C-A **
10955490-C-T **
20215965-CA-C 18054079-CA-C P5_Dst **
6868861-A-G 7000820-A-G **
3434913-G-T 3566872-G-T **
3817526-G-T 3949485-G-T **
4266579-G-T 4398538-G-T **
4986425-A-G 5118384-A-G **
5422653-G-T 5554612-G-T **
5853064-A-G 5985023-A-G **
6073979-G-T 6205938-G-T **
6151433-A-T 6283392-A-T IR3_Dst **
6224717-CAA-C 6356676-CAA-C IR3_Dst 12×A**
6354198-GA-G 6486157-GA-G **
6700893-A-T 6832852-A-T **
6700898-G-C 6832857-G-C **
6706866-C-A 6838825-C-A **
6757675-G-T 6889634-G-T **
6944859-C-A 7076818-C-A **
2861324-G-A 2993283-G-A **
6967799-G-A 7099758-G-A **
6967799-G-GT 7099758-G-GT **
6967807-A-C 7099766-A-C **
6967810-T-C 7099769-T-C **
6967811-A-G 7099770-A-G **
6967818-T-C 7099777-T-C **
7254032-A-G 7385991-A-G **
7387819-C-A 7519778-C-A **
7709031-C-G 7840990-C-G **
8170465-G-T 8302424-G-T **
8217944-T-C 8349903-T-C **
8689400-T-G 8821359-T-G **
8706107-T-A 8838066-T-A **
9198138-A-G 9360529-A-G **
3116183-T-G 3248142-T-G **
6151430-G-T 6283389-G-T IR3_Dst **
15193687-T-C 13081773-T-C **
10877777-C-T **
17789546-C-A 15677666-C-A **
18712751-G-A 16600871-G-A **
18712762-G-A 16600882-G-A **
19290449-T-C 17178569-T-C **
18725041-C-A 16613161-C-A **
18750098-G-T 16638218-G-T **
10841952-T-C **
4920017-C-A 5051976-C-A **
13457707-A-T 11302031-A-T **
25647102-C-A 23500955-C-A P1_b3 **
14844900-C-A 12732966-C-A **
16336939-A-G 14225059-A-G **
18963499-C-A 16851619-C-A **
13457706-C-T 11302030-C-T **
16945610-C-A 14833730-C-A **
14273086-G-T 12152380-G-T **
16118599-T-G 14006719-T-G P8_Prx **
2686425-C-A 2818384-C-A **
23742337-G-A 21580451-G-A **
13939658-C-A 11818952-C-A **
6756931-AAAAG-A 6888890-AAAAG-A **
19365182-CA-C 17253302-CA-C 8×A***
10828953-C-A ***
56839480-G-GA ***
8992722-CTT-C,CTTTT 9155113-CTT-C,CTTTT 14×T***
22747732-A-T 20585846-A-T ***
19393457-C-A 17281577-C-A ***
7131951-G-A 7263910-G-A ***
10807344-C-G ***
13714287-A-T 11558611-A-T ***
23081490-ATTT-A 20919604-ATTT-A 12×T***
21521595-C-A 19359709-C-A ***
17043202-A-G 14931322-A-G ***
13294509-G-GTT 11138833-G-GTT 12×T***
7976138-T-C 8108097-T-C ***
16832762-C-G 14720882-C-G ***
8376431-C-A 8508390-C-A ***
23576627-T-C 21414741-T-C ***
16320360-G-T 14208480-G-T ***
58985634-A-G 56839487-A-G ***
9992023-C-A 10154414-C-A ***
17685339-C-CT 15573459-C-CT 10×T***
58985642-A-T 56839495-A-T ***
23745559-G-T 21583673-G-T ***
18389980-C-A 16278100-C-A P6_Gap ***
10673422-C-A ***
10798301-A-C ***
16577533-C-A 14465653-C-A ***
2762652-C-A 2894611-C-A ***
2834869-CTTT-C,CTTTT 2966828-CTTT-C,CTTTT 15×T***
2836399-G-T 2968358-G-T ***
3178410-G-T 3310369-G-T ***
15685221-G-T 13573341-G-T ***
15279060-C-A 13167159-C-A ***
15405609-C-A 13293729-C-A ***
19509146-A-G 17397266-A-G ***
3995043-AAAG-A 4127002-AAAG-A ***
23498080-AT-A,ATTT 21336194-AT-A,ATTT 19×T***
18256350-C-A 16144470-C-A ***
20723298-A-G 18561412-A-G P4_Prx ***
21094738-GAA-G 18932852-GAA-G 10×A***
6912749-C-A 7044708-C-A ***
21248824-C-A 19086938-C-A ***
13202538-C-A 11046862-C-A ***
21639292-A-G 19477406-A-G ***
8270007-G-T 8401966-G-T ***
15218788-G-T 13106874-G-T ***
28492362-C-A 26346215-C-A ***
21988081-C-A 19826195-C-A ***
22047940-G-A 19886054-G-A ***
11030161-TCCAA-C,CCC ***
18917335-C-CA 16805455-C-CA 8×A***
23807175-C-A 21645289-C-A ***
4929016-C-A 5060975-C-A ***
56839484-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 60897877879271735347110315
Used in age calculations877879271735347110315
Counts of SNPs2827
Variant counts last updated 2019-11-29 02:46:09.



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