Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > S5488 > FGC11358 > Z17568 > BY19855

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B128812
14165-T-C A+
22290957-T-A 20129071-T-A DYZ19 A*
26064673-T-C 23918526-T-C P1_Y1 A*
28810927-G-A 26664780-G-A A*
28816377-A-T 26670230-A-T A*
28817289-A-T 26671142-A-T A*
13450013-C-T 11294337-C-T A*
28790859-G-A 26644712-G-A A*
26316275-T-A 24170128-T-A P1_Y1 A*
28790842-T-A 26644695-T-A A*
22232802-A-G 20070916-A-G DYZ19 A*
28811044-A-T 26664897-A-T A*
19901539-T-C 17789659-T-C P5_Prx A*
26062662-A-G 23916515-A-G P1_Y1 A*
28810885-G-C 26664738-G-C A*
28793540-C-G 26647393-C-G A*
28790895-A-T 26644748-A-T A*
28790853-G-GGAATT 26644706-G-GGAATT A*
28790852-T-A 26644705-T-A A*
28817512-T-G 26671365-T-G A*
28816577-T-A 26670430-T-A A*
13689850-C-G 11534174-C-G A*
28809813-T-A 26663666-T-A A*
22849127-G-A 20687241-G-A BY141235 YY+
22677318-AAAGAGTCTAGCCCATGTATAGC-A 20515432-AAAGAGTCTAGCCCATGTATAGC-A +
22677318-A-T 20515432-A-T BY139973 YY+
13991546-T-C 11870840-T-C BY92139 YY+
22903095-G-A 20741209-G-A BY37444 YY+
8548169-C-T 8680128-C-T BY73917 YY+
23072052-G-A 20910166-G-A BY55422 YY+
8131790-G-A 8263749-G-A BY70202 YY+
23422535-C-G 21260649-C-G BY145189 YY+
23637756-G-A 21475870-G-A BY146944 Y+
8089174-A-C 8221133-A-C BY161309 YY+
8805007-T-C 8936966-T-C BY161474 YY+
18996768-A-G 16884888-A-G BY43536 YY+
21905956-G-A 19744070-G-A BY136378 YY+
16369059-A-T 14257179-A-T BY162133 YY+
13805437-G-C 11684731-G-C BY51108 +
14009634-G-T 11888928-G-T BY161690 YY+
14067446-G-T 11946740-G-T BY161705 YY+
14323518-G-T 12202812-G-T BY161757 YY+
14601389-A-T 12489591-A-T BY161809 YY+
14878247-T-C 12766317-T-C BY98197 YY+
15318253-G-A 13206359-G-A BY161929 YY+
16228184-G-A 14116304-G-A BY162095 YY+
17338949-G-A 15227069-G-A BY113960 YY+
21721712-A-C 19559826-A-C BY162963 YY+
18036988-G-T 15925108-G-T BY162490 YY+
18816407-G-A 16704527-G-A BY124064 YY+
19290283-C-G 17178403-C-G BY128005 YY+
19317914-C-T 17206034-C-T BY162750 YY+
21091930-T-C 18930044-T-C BY130366 YY+
9511006-G-A 9673397-G-A BY161576 +
21369243-G-A 19207357-G-A BY132394 YY+
9031420-T-A 9193811-T-A BY77531 Y+
7926326-G-C 8058285-G-C BY68804 YY+
21312429-G-A 19150543-G-A BY132011 YY+
7863484-T-C 7995443-T-C BY68297 YY+
22294508-T-C 20132622-T-C BY160858 DYZ19 +
7619394-T-C 7751353-T-C BY161208 YY+
21811818-CA-C 19649932-CA-C +
22263842-T-C 20101956-T-C BY214780 DYZ19 +
2888678-A-G 3020637-A-G M365 YY+
4136702-A-T 4268661-A-T Y17738 +
2810168-G-T 2942127-G-T BY160946 YY+
7088538-G-A 7220497-G-A BY161114 YY+
15750506-T-C 13638626-T-C BY162015 YY+
16447158-A-AAC 14335278-A-AAC 22×AC*
16548757-T-C 14436877-T-C YY*
19405569-C-CTGAGAT 17293689-C-CTGAGAT S27900 7×TGAGAT*
6150197-G-T 6282156-G-T IR3_Dst **
10806245-C-CA **
10812503-G-A **
10806227-C-T **
6117837-C-A 6249796-C-A **
10806214-G-T **
10770424-C-T **
10806210-C-T **
10792794-ATTCCATTCCC-A **
10789118-T-G **
10789116-A-G **
10772204-T-C **
6209953-G-T 6341912-G-T IR3_Dst **
10770404-T-A **
10770375-C-T **
6109916-A-C 6241875-A-C **
10846989-A-C **
5866038-C-A 5997997-C-A **
10900880-C-T **
10942364-C-A **
10930798-TTCCACTCCATTCCACTCCAA-T **
10924206-T-A **
10920153-T-C **
10912244-C-G **
10912223-G-C **
10912219-A-G **
10900906-C-G **
10898988-T-C **
10823167-T-G **
10890238-T-G **
10888997-C-A **
10870597-T-C **
10869467-T-G **
10864803-C-A **
10858434-A-G **
10851347-C-A **
10770343-C-T **
10846971-TCCA-T **
10770368-T-TTACAC **
10693445-CTTTG-C **
10762476-A-C **
6996760-T-C 7128719-T-C **
9509839-A-C 9672230-A-C **
9310537-T-A 9472928-T-A **
9211367-A-ATT 9373758-A-ATT **
10946501-C-A **
6509364-T-C 6641323-T-C **
9184075-T-G 9346466-T-G **
6711160-C-A 6843119-C-A **
9109667-G-T **
6926785-C-A 7058744-C-A **
8807363-G-T 8939322-G-T **
6452431-G-T 6584390-G-T **
7042099-G-C 7174058-G-C **
7166409-C-A 7298368-C-A **
7223125-G-C 7355084-G-C **
7223127-G-T 7355086-G-T **
7223132-T-C 7355091-T-C **
7223138-C-T 7355097-C-T **
7282127-G-T 7414086-G-T **
7310572-T-A 7442531-T-A **
7384616-C-A 7516575-C-A **
6509282-A-G 6641241-A-G **
6374239-C-A 6506198-C-A **
10755637-ATCTCCACTCCACTCCATTCC-A **
10657478-G-A **
7832190-T-G 7964149-T-G **
6209968-C-A 6341927-C-A IR3_Dst **
10689533-C-G **
10689217-CCATTCCATT-C **
10668842-G-T **
10668038-C-A **
10667984-A-G **
6209990-G-T 6341949-G-T IR3_Dst **
10660076-G-T **
10071219-G-T 10233610-G-T **
9805134-A-G 9967525-A-G **
10032512-T-C 10194903-T-C **
10029295-G-A 10191686-G-A **
10023682-G-C 10186073-G-C **
9996373-C-A 10158764-C-A **
6210008-C-A 6341967-C-A IR3_Dst **
6210021-C-A 6341980-C-A IR3_Dst **
6210024-C-A 6341983-C-A IR3_Dst **
6210040-C-A 6341999-C-A IR3_Dst **
6357961-G-T 6489920-G-T **
9986034-C-A 10148425-C-A **
10943432-T-G **
18454880-C-CCTTTCTTT 16343000-C-CCTTTCTTT P6_Dst 13×CTTT**
10952245-C-A **
23742294-C-T 21580408-C-T **
25994734-T-G 23848587-T-G P1_Y1 **
25994721-T-G 23848574-T-G P1_Y1 **
25994720-C-A 23848573-C-A P1_Y1 **
25994714-G-T 23848567-G-T P1_Y1 **
25994670-T-G 23848523-T-G P1_Y1 **
24582546-A-C 22436399-A-C P3_t2 **
24582242-GTTTGC-G 22436095-GTTTGC-G P3_t2 **
24016940-T-G 21870793-T-G **
23953231-C-A 21807084-C-A **
23773591-G-C 21611705-G-C **
23264189-A-AAAAAG 21102303-A-AAAAAG 5×AAAAG**
26152150-C-A 24006003-C-A P1_Y1 **
23026945-T-G 20865059-T-G **
22956023-A-C 20794137-A-C **
21919556-A-C 19757670-A-C **
21703264-T-G 19541378-T-G **
21556944-T-A 19395058-T-A **
21459841-C-A 19297955-C-A **
21283298-C-A 19121412-C-A **
21238521-C-A 19076635-C-A **
21135045-T-C 18973159-T-C **
21096175-G-A 18934289-G-A **
20793359-C-G 18631473-C-G P4_Prx **
26114349-G-T 23968202-G-T P1_Y1 **
26199696-G-T 24053549-G-T P1_Y1 **
20533435-A-C 18371549-A-C P5_Dst **
28580282-A-G 26434135-A-G **
56845520-G-GT **
56845517-G-C **
56845512-C-T **
56842240-TG-T **
56842228-C-G **
56838844-G-GTC **
56724845-AATGGG-A **
56705725-G-T **
56705681-A-T **
56699845-G-A **
28749361-A-C 26603214-A-C **
28518889-C-A 26372742-C-A **
26352380-C-A 24206233-C-A P1_Y1 23×GT**
28515444-C-A 26369297-C-A **
28502619-T-C 26356472-T-C **
28502440-G-T 26356293-G-T **
28500805-T-A 26354658-T-A **
28475636-C-A 26329489-C-A **
28464127-G-T 26317980-G-T **
28004551-A-C 25858404-A-C P1_Y2 **
28004540-C-A 25858393-C-A P1_Y2 **
28004538-C-T 25858391-C-T P1_Y2 **
27495210-G-T 25349063-G-T P1_Y2 **
27447482-A-G 25301335-A-G P1_Y2 9×TG**
20574881-T-G 18412995-T-G P5_Dst **
19759336-C-T 17647456-C-T P5_Prx **
10964919-G-A **
11030988-C-A **
14430410-C-A 12309683-C-A **
5779794-A-C 5911753-A-C **
13929965-T-A 11809259-T-A **
13855226-C-A 11734520-C-A **
13734616-C-A 11578940-C-A **
13734585-C-A 11578909-C-A **
13734580-T-A 11578904-T-A **
13335228-G-T 11179552-G-T **
13256333-G-T 11100657-G-T **
13255470-C-A 11099794-C-A **
11021188-TCC-T **
14605245-C-A 12493447-C-A **
11020509-G-A **
11016251-C-A **
11003934-C-T **
10999356-T-G **
10992128-A-T **
10982518-T-G **
10981779-T-C **
10974986-T-G **
10974835-C-G **
10974810-C-G **
10967848-C-A **
12377367-C-A **
15218699-G-C 13106785-G-C **
19744900-C-T 17633020-C-T P5_Prx **
17667076-T-C 15555196-T-C **
19250158-T-C 17138278-T-C **
19246853-C-A 17134973-C-A **
19216458-C-T 17104578-C-T **
19073761-G-T 16961881-G-T **
19043800-A-C 16931920-A-C **
18928729-G-T 16816849-G-T **
18855632-C-A 16743752-C-A **
18779073-C-G 16667193-C-G **
18361376-G-T 16249496-G-T P6_Prx **
18345949-TA-T 16234069-TA-T P6_Prx **
18270284-A-T 16158404-A-T **
17323537-G-A 15211657-G-A **
15382779-GA-G 13270899-GA-G **
17270116-G-T 15158236-G-T **
16938543-T-G 14826663-T-G **
16868668-A-C 14756788-A-C **
16687884-G-A 14576004-G-A **
16625262-C-A 14513382-C-A **
16490523-T-C 14378643-T-C **
16015039-G-T 13903159-G-T **
15687719-C-A 13575839-C-A **
15682962-C-A 13571082-C-A **
15636841-A-G 13524961-A-G **
15412419-C-T 13300539-C-T **
5828127-CTGTTGTCCTA-C 5960086-CTGTTGTCCTA-C **
5482700-T-C 5614659-T-C **
5698957-G-T 5830916-G-T **
19075106-T-A 16963226-T-A **
10766696-T-C **
10766691-C-A **
10766686-T-TGAAAC **
10766684-C-T **
10766671-C-T **
10949441-T-A **
11658189-A-T **
3074859-C-A 3206818-C-A **
10909744-T-G **
10951111-T-C **
10951102-C-T **
10787030-C-A **
9602675-G-T 9765066-G-T IR3_Prx **
9107643-C-A **
10900923-A-C **
26199661-G-T 24053514-G-T P1_Y1 **
6996756-G-A 7128715-G-A **
6996755-T-C 7128714-T-C **
4561503-C-A 4693462-C-A **
21208767-C-A 19046881-C-A **
10856738-C-A **
10840069-A-T **
13929967-C-A 11809261-C-A **
10756366-G-A **
10801491-C-G **
22949878-C-A 20787992-C-A 23×T**
10766698-A-T **
10856721-C-G **
13468066-G-A 11312390-G-A **
10762468-T-C **
20693838-C-A 18531952-C-A P4_Prx **
10658118-T-A **
5664208-C-A 5796167-C-A **
3092636-C-A 3224595-C-A **
5676718-G-T 5808677-G-T **
10946426-C-A **
6996759-C-A 7128718-C-A **
26161194-T-TG 24015047-T-TG P1_Y1 **
26199645-G-A 24053498-G-A BY41124 P1_Y1 **
17840271-C-A 15728391-C-A HU578 **
24637482-GT-G 22491335-GT-G P3_t2 **
10961333-G-T **
10762454-CT-C **
4108278-C-A 4240237-C-A **
56845519-C-T **
56838844-G-T **
14361842-C-A 12241137-C-A **
13579391-A-G 11423715-A-G **
4902157-C-A 5034116-C-A **
13846727-A-C 11726021-A-C **
18976522-A-C 16864642-A-C **
16015194-C-A 13903314-C-A **
10951100-C-T **
10796483-C-T **
19377081-G-GA 17265201-G-GA 9×A**
18186072-C-A 16074192-C-A **
13468081-T-C 11312405-T-C **
13468064-G-A 11312388-G-A **
10860553-C-A **
14328152-C-A 12207446-C-A **
13579375-C-CA 11423699-C-CA **
13579366-TA-T 11423690-TA-T **
6816546-G-T 6948505-G-T 22×A**
10664102-G-T **
13207975-C-A 11052299-C-A **
10954151-C-A **
28542288-C-A 26396141-C-A **
10965141-C-A **
11012275-T-C **
22836685-C-A 20674799-C-A **
11676307-G-A **
11676300-T-G **
4201608-C-A 4333567-C-A **
15858164-C-A 13746284-C-A **
22425529-G-A 20263643-G-A DYZ19 **
13964460-C-CTG 11843754-C-CTG 13×TG**
27618010-G-T 25471863-G-T P1_Y2 8×A**
13514899-G-T 11359223-G-T **
22231966-G-T 20070080-G-T DYZ19 **
28802688-G-T 26656541-G-T **
9583647-CCA-C 9746038-CCA-C IR3_Prx **
27815070-C-CT 25668923-C-CT P1_Y2 10×T**
2814843-A-G 2946802-A-G **
6403148-G-A 6535107-G-A **
5621284-C-G 5753243-C-G **
13514851-G-A 11359175-G-A **
56838791-G-T **
10692682-C-A **
13468052-C-A 11312376-C-A **
18188090-C-A 16076210-C-A **
22353453-G-T 20191567-G-T DYZ19 **
10692664-G-T **
13257475-T-C 11101799-T-C **
13250317-A-T 11094641-A-T **
10851531-C-A **
16017761-C-A 13905881-C-A **
20438816-A-T 18276930-A-T P5_Dst **
10856720-C-A **
10951711-A-G **
20404469-AAAAAAG-A 18242583-AAAAAAG-A P5_Dst **
7437435-C-A 7569394-C-A **
11021349-CTCTACTGCAT-C **
10789158-C-T **
10993406-C-A **
10770327-T-A **
9938333-C-A 10100724-C-A **
10900910-T-A **
21139513-C-A 18977627-C-A **
10796501-A-C **
10993459-T-C **
10993444-A-C **
10993433-T-A **
10993427-C-G **
10993422-C-A **
10993408-ATTT-A **
10993410-T-TCC **
10752756-C-A **
16797-G-C **
18701863-C-A 16589983-C-A **
27435867-C-A 25289720-C-A P1_Y2 **
2718925-C-A 2850884-C-A **
28656825-C-A 26510678-C-A **
3074939-T-G 3206898-T-G **
3155421-C-A 3287380-C-A **
10770454-G-T **
17770440-C-A 15658560-C-A **
3219869-C-A 3351828-C-A **
5200758-G-T 5332717-G-T **
21015059-AAGAGAG-A 18853173-AAGAGAG-A P4_Dst 9×AG**
3278604-G-T 3410563-G-T **
11654312-C-A **
10974975-C-A **
3705994-C-A 3837953-C-A **
21698336-G-T 19536450-G-T **
11012319-A-C **
10847000-A-T **
7223155-G-A 7355114-G-A **
3732124-C-A 3864083-C-A **
14719386-C-A 12607454-C-A **
10887200-C-A **
11643553-C-A **
6238684-A-C 6370643-A-C IR3_Dst **
10815106-C-T **
3834687-C-A 3966646-C-A **
10846990-C-T **
10877155-C-A **
9596496-TG-T 9758887-TG-T IR3_Prx **
4213305-C-A 4345264-C-A **
7646656-C-A 7778615-C-A **
11673285-C-A **
10974968-T-A **
14712524-G-T 12600591-G-T **
10770439-C-T **
56842232-G-T **
13256060-T-G 11100384-T-G **
10988719-C-A **
19669865-CCCCCT-C 17557985-CCCCCT-C P5_Prx **
14052964-C-A 11932258-C-A **
10685426-T-A **
7223145-A-T 7355104-A-T **
10796554-T-C **
10796511-CATTGA-C **
10796512-A-G **
56699858-A-G **
28722241-C-A 26576094-C-A **
17929214-G-T 15817334-G-T **
10836086-C-A **
56842255-T-G **
3909575-C-A 4041534-C-A **
22269686-G-A 20107800-G-A DYZ19 **
17183396-C-A 15071516-C-A **
13888688-G-T 11767982-G-T **
7970144-C-A 8102103-C-A **
4867604-G-T 4999563-G-T **
15728909-C-A 13617029-C-A **
4869099-C-A 5001058-C-A **
4925287-A-C 5057246-A-C **
17222679-C-A 15110799-C-A **
4925991-T-A 5057950-T-A **
4936517-C-A 5068476-C-A **
10678282-G-GATTCCATTCCACTACATTGC **
10868204-C-A **
5003434-G-T 5135393-G-T **
5067334-CTTT-C 5199293-CTTT-C 13×T**
5084967-C-A 5216926-C-A **
5177767-G-T 5309726-G-T **
5305835-C-A 5437794-C-A **
5329695-C-A 5461654-C-A **
2706677-T-A 2838636-T-A CTS69 **
5664268-C-A 5796227-C-A **
10770435-C-A **
5242761-C-A 5374720-C-A **
17490233-C-A 15378353-C-A **
4786276-G-T 4918235-G-T **
10762466-C-T **
10806254-T-C **
10815159-C-A **
10815113-C-CCACTT **
10972683-T-C **
10796533-C-T **
10796526-C-T **
10948755-C-A **
26422487-G-T 24276340-G-T P1_Y1 **
4016242-C-A 4148201-C-A **
4215404-G-T 4347363-G-T **
10762460-T-TG **
10762455-T-A **
4651078-C-A 4783037-C-A **
22487794-G-T 20325908-G-T DYZ19 **
17323517-G-A 15211637-G-A **
3437117-TA-T 3569076-TA-T 9×A**
10972678-T-C **
10999686-C-A **
5957034-C-A 6088993-C-A ***
10930016-C-T ***
10930023-C-G ***
10930026-T-C ***
10746658-AATTCC-A ***
10756291-G-C ***
18255888-TAAAA-T 16144008-TAAAA-T 22×A***
4582274-G-GT 4714233-G-GT 9×T***
11004397-T-C ***
10664151-T-C ***
11672969-A-G ***
10988592-TTTCATTCCAC-T,TTATATTCCAT ***
56827511-GCTTTCCTTTC-G,GCTTTC 5×CTTTC***
7018027-ATT-A,AT 7149986-ATT-A,AT 24×T***
10799508-A-C,G ***
10968027-C-A ***
10895809-TCCT-T,TCCA ***
13809246-A-G 11688540-A-G ***
10664111-T-C ***
16445834-C-T 14333954-C-T ***
10664112-T-C ***
10664128-C-G ***
10836521-A-C,T ***
10677095-G-A ***
10677067-CTCGG-C ***
10997535-TCCTCG-T,TCCTCT ***
6445090-C-A 6577049-C-A ***
10894220-C-A ***
22893304-C-CCTTT,CCTTTCTTT 20731418-C-CCTTT,CCTTTCTTT 17×CTTT***
10663639-TTCCACTCCAC-T ***
10991246-A-G ***
23824948-A-T 21663062-A-T ***
11009882-C-A ***
10663393-TTCTTT-T,TCCATC ***
10664113-C-G ***
10668942-C-A ***
13489155-G-T 11333479-G-T ***
10677084-GG-G,GA ***
10995360-C-A ***
10872250-C-A ***
7061140-C-A 7193099-C-A ***
23241974-TG-G,T 21080088-TG-G,T ***
10991237-T-C ***
10801363-CTTCCA-C ***
10791161-A-C ***
10791163-G-C ***
11034904-G-T ***
11665806-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B1288121023449982327918064554
Used in age calculations1023449982327918064554
Counts of SNPs3838
Variant counts last updated 2019-03-05 01:03:57.



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