Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > FGC28995 > FGC28987 > FGC28996

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
FQESS
3689591-T-C 3821550-T-C FGC28983 +
5218513-G-A 5350472-G-A FGC28984 +
7515463-A-T 7647422-A-T FGC28988 Y+
13226969-T-C 11071293-T-C FGC28990 +
14259085-C-G 12138379-C-G FGC28992 Y+
5520589-A-G 5652548-A-G FGC28985 +
5803704-C-T 5935663-C-T FGC28986 *
13105451-G-A 10594937-G-A **
22335798-C-T 20173912-C-T DYZ19 **
13536848-T-C 11381172-T-C **
13257223-G-C 11101547-G-C **
13287569-G-A 11131893-G-A **
22332804-C-A 20170918-C-A DYZ19 **
17819955-GTA-G 15708075-GTA-G **
22308403-T-G 20146517-T-G DYZ19 **
13463994-A-T 11308318-A-T **
13467450-G-T 11311774-G-T **
13684194-G-C 11528518-G-C **
58852023-A-C 56738848-T-G ***
58847890-A-C 56742981-T-G ***
58852024-T-C 56738847-A-G ***
58849559-T-A 56741312-A-T ***
58849530-G-T 56741341-C-A 4×TCCAT***
58859214-T-C 56731657-A-G ***
58859232-G-C 56731639-C-G ***
58864061-G-T 56726810-C-A ***
58848479-A-C 56742392-T-G ***
58847897-C-T 56742974-G-A ***
58830812-G-T 56760059-C-A ***
58846184-T-A 56744687-A-T ***
58847290-A-G 56743581-T-C ***
58847260-G-C 56743611-C-G ***
58847255-C-T 56743616-G-A ***
58846744-T-C 56744127-A-G ***
58830819-C-G 56760052-G-C ***
58865779-T-A 56725092-A-T ***
58846182-A-T 56744689-T-A ***
58845275-A-C 56745596-T-G ***
58845256-C-A 56745615-G-T ***
58840144-G-T 56750727-C-A ***
58840142-G-A 56750729-C-T ***
58840052-T-A 56750819-A-T ***
58834480-C-T 56756391-G-A ***
58830841-G-T 56760030-C-A ***
58865767-T-C 56725104-A-G ***
13467139-A-T 11311463-A-T ***
58865780-T-G 56725091-A-C ***
58908565-T-A 56682306-A-T ***
58904203-G-A 56686668-C-T ***
58904212-A-C 56686659-T-G ***
58906391-A-T 56684480-T-A ***
58906408-T-C 56684463-A-G ***
58907104-T-C 56683767-A-G ***
58907109-T-C 56683762-A-G ***
58908574-C-A 56682297-G-T ***
58903567-A-C 56687304-T-G ***
58908579-G-C 56682292-C-G ***
58909122-C-A 56681749-G-T ***
58909144-C-G 56681727-G-C ***
58909164-A-C 56681707-T-G ***
58909204-G-C 56681667-C-G ***
58909801-T-C 56681070-A-G ***
58904194-C-T 56686677-G-A ***
58903546-T-C 56687325-A-G ***
58865781-C-T 56725090-G-A ***
58874429-G-T 56716442-C-A ***
58872241-G-C 56718630-C-G ***
58872300-A-G 56718571-T-C ***
58872310-G-C 56718561-C-G ***
58830808-T-C 56760063-A-G ***
58872365-T-C 56718506-A-G ***
58872366-A-C 56718505-T-G ***
58874431-G-T 56716440-C-A ***
58892707-C-G 56698164-G-C ***
58874466-G-T 56716405-C-A ***
58874478-A-T 56716393-T-A ***
58889798-T-G 56701073-A-C ***
58889841-T-C 56701030-A-G ***
58889881-T-G 56700990-A-C ***
58891614-G-C 56699257-C-G ***
58891661-C-G 56699210-G-C ***
58872356-A-C 56718515-T-G ***
58830763-G-C 56760108-C-G ***
58830793-T-C 56760078-A-G ***
27257269-C-G 25111122-C-G P1_g3 ***
26523736-A-G 24377589-A-G P1_Y1 ***
27038402-A-T 24892255-A-T P1_r4 ***
27082385-G-A 24936238-G-A P1_r4 ***
27082397-A-G 24936250-A-G P1_r4 ***
27130328-A-G 24984181-A-G P1_g3 ***
27130331-A-T 24984184-A-T P1_g3 ***
27130332-A-G 24984185-A-G P1_g3 ***
27257307-T-A 25111160-T-A P1_g3 ***
26421740-G-C 24275593-G-C P1_Y1 ***
27257319-A-T 25111172-A-T P1_g3 ***
27289953-G-A 25143806-G-A P1_g3 ***
27408278-G-A 25262131-G-A P1_g3 ***
27508705-G-C 25362558-G-C P1_Y2 ***
27517552-A-T 25371405-A-T P1_Y2 ***
27677773-C-G 25531626-C-G P1_Y2 ***
27677793-T-A 25531646-T-A P1_Y2 ***
26523670-C-T 24377523-C-T P1_Y1 ***
26243586-G-T 24097439-G-T P1_Y1 ***
27692252-G-T 25546105-G-T P1_Y2 ***
26145417-A-C 23999270-A-C P1_Y1 ***
26120285-C-T 23974138-C-T P1_Y1 ***
26120297-C-T 23974150-C-T P1_Y1 ***
26143858-T-G 23997711-T-G P1_Y1 ***
26143859-G-C 23997712-G-C P1_Y1 ***
26143861-C-T 23997714-C-T P1_Y1 ***
26143872-G-A 23997725-G-A P1_Y1 ***
26143885-C-A 23997738-C-A P1_Y1 ***
26145418-T-A 23999271-T-A P1_Y1 ***
26243581-G-A 24097434-G-A P1_Y1 ***
26145422-C-T 23999275-C-T P1_Y1 ***
26146081-A-C 23999934-A-C P1_Y1 ***
26147336-A-G 24001189-A-G P1_Y1 ***
26147341-G-A 24001194-G-A P1_Y1 ***
26153676-T-C 24007529-T-C P1_Y1 ***
26194745-T-C 24048598-T-C P1_Y1 ***
26194747-A-T 24048600-A-T P1_Y1 ***
27677870-A-C 25531723-A-C P1_Y2 ***
27699703-T-C 25553556-T-C P1_Y2 ***
58830779-G-A 56760092-C-T ***
58820431-C-T 56770440-G-A ***
28405637-T-A 26259490-T-A P1_gr2 ***
28491339-A-C 26345192-A-C ***
28582716-A-G 26436569-A-G ***
28784259-A-T 26638112-A-T ***
58819350-N-T 56771521-N-A ***
58819351-N-T 56771520-N-A ***
58820429-A-T 56770442-T-A ***
58823047-A-C 56767824-T-G ***
28106922-T-A 25960775-T-A P1_Y2 ***
58825356-G-A 56765515-C-T ***
58826702-T-A 56764169-A-T ***
58826734-C-G 56764137-G-C ***
58826744-C-G 56764127-G-C ***
58829644-A-C 56761227-T-G ***
58829645-C-A 56761226-G-T ***
58909814-G-T 56681057-C-A ***
28106957-T-G 25960810-T-G P1_Y2 ***
28106919-C-G 25960772-C-G P1_Y2 ***
27699705-T-C 25553558-T-C P1_Y2 ***
27957083-A-T 25810936-A-T P1_Y2 ***
27699707-T-C 25553560-T-C P1_Y2 ***
27781960-A-T 25635813-A-T P1_Y2 ***
27833775-G-A 25687628-G-A P1_Y2 ***
27833776-G-A 25687629-G-A P1_Y2 ***
27833791-T-C 25687644-T-C P1_Y2 ***
27957080-A-T 25810933-A-T P1_Y2 ***
27957081-T-G 25810934-T-G P1_Y2 ***
28011837-A-C 25865690-A-C P1_Y2 ***
28013280-T-C 25867133-T-C P1_Y2 ***
28011860-T-A 25865713-T-A P1_Y2 ***
28011871-G-A 25865724-G-A P1_Y2 ***
28013233-A-T 25867086-A-T P1_Y2 ***
28013239-G-A 25867092-G-A P1_Y2 ***
28013245-G-A 25867098-G-A P1_Y2 ***
28013250-G-A 25867103-G-A P1_Y2 ***
28013255-A-T 25867108-A-T P1_Y2 ***
58909812-C-G 56681059-G-C ***
2651311-AA-T 2783270-AA-T ***
58912273-G-C 56678598-C-G ***
22504777-CT-AC 20342891-CT-AC DYZ19 ***
22342845-ATCCA-GTCCT 20180959-ATCCA-GTCCT DYZ19 ***
22344854-ACA-CCT 20182968-ACA-CCT DYZ19 ***
22366680-GTGT-ATTG 20204794-GTGT-ATTG DYZ19 ***
22420942-CGGTG-AGGTA 20259056-CGGTG-AGGTA DYZ19 ***
22421635-CA-TC 20259749-CA-TC DYZ19 ***
22496026-CTT-AAG 20334140-CTT-AAG DYZ19 ***
23801733-C-CAAAAA 21639847-C-CAAAAA 31×A***
22308377-CAT-TGG 20146491-CAT-TGG DYZ19 ***
24015819-TC-A 21869672-TC-A ***
25524693-C-CTTTTT 23378546-C-CTTTTT P1_gr1 33×T***
25556390-GTA-TTT 23410243-GTA-TTT P1_gr1 ***
25556397-CAA-TAC 23410250-CAA-TAC P1_gr1 ***
26060210-CT-AA 23914063-CT-AA P1_Y1 ***
26120283-TCC-CCT 23974136-TCC-CCT P1_Y1 ***
22337562-A-AT 20175676-A-AT DYZ19 ***
22308354-ACAGGACC-CT 20146468-ACAGGACC-CT DYZ19 ***
26143858-TGAC-GCAT 23997711-TGAC-GCAT P1_Y1 ***
20432193-ACTGCA-CCTGTC 18270307-ACTGCA-CCTGTC P5_Dst ***
20331960-TTG-GCC 18170074-TTG-GCC P5_Dst ***
20333835-C-CGAAAAAAAAA 18171949-C-CGAAAAAAAAA P5_Dst 24×A***
20378386-AACTA-CAATG 18216500-AACTA-CAATG P5_Dst ***
20378401-CC-TG 18216515-CC-TG P5_Dst ***
20396061-GGA-G 18234175-GGA-G P5_Dst ***
20396067-G-CA 18234181-G-CA P5_Dst ***
20686582-GG-AT 18524696-GG-AT P4_Prx ***
22265873-GC-TG 20103987-GC-TG DYZ19 ***
20801594-TTCTC-T 18639708-TTCTC-T P4_Prx ***
21012779-GGCCT-AGCTTC 18850893-GGCCT-AGCTTC P4_Dst ***
21021889-ATGCTGA-GTCATAG 18860003-ATGCTGA-GTCATAG P4_Dst ***
21824255-C-CAAAAAAAAA 19662369-C-CAAAAAAAAA 30×A***
22223492-TG-CA 20061606-TG-CA DYZ19 ***
22250468-CA-C 20088582-CA-C DYZ19 ***
22265856-GT-TA 20103970-GT-TA DYZ19 ***
26120291-C-CCT 23974144-C-CCT P1_Y1 ***
26145417-ATAAGC-CAAAGT 23999270-ATAAGC-CAAAGT P1_Y1 ***
20119657-AAA-TAG 18007777-AAA-TAG P5_Dst ***
58847175-AC-A 56743694-AG-A ***
58819357-N-NCATTA ***
58819359-NNNGA-N ***
58823337-ATTCCC-A 56767528-TGGGAA-T ***
58830797-GTC-G 56760071-TGA-T ***
58843985-AATTCCATTCCATTCGATTTAGTTCGATTCTATTCACTTCCATTTCCATTCG-A 56746821-CAATGGAATGGAATCGAATGGAAATGGAAGTGAATAGAATCGAACTAAATCG-C ***
58844903-GGA-TTC 56745966-TCC-GAA ***
58847195-GT-CA 56743675-AC-TG ***
28784306-GGAAAA-G 26638159-GGAAAA-G ***
58872292-GTTT-ATTC 56718576-AAAC-GAAT ***
58890436-AC-CA 56700434-GT-TG ***
58908584-CA-C 56682284-AT-A ***
58908589-TCAC-CCAT 56682279-GTGA-ATGG ***
58909166-CGGAC-TGTTG 56681701-GTCCG-CAACA ***
58909404-TG-AT 56681466-CA-AT ***
28798930-AAGTGGAGTGTATT-GAGTTGAGAGGACA 26652783-AAGTGGAGTGTATT-GAGTTGAGAGGACA ***
28491345-A-AAACCCCCCCCAAAAAAAAG 26345198-A-AAACCCCCCCCAAAAAAAAG ***
26194745-TGA-CAT 24048598-TGA-CAT P1_Y1 ***
27677817-TAGTGCTTGC-T 25531670-TAGTGCTTGC-T P1_Y2 ***
27257313-A-AG 25111166-A-AG P1_g3 ***
27289953-GC-ACT 25143806-GC-ACT P1_g3 ***
27402844-TTG-CTA 25256697-TTG-CTA P1_g3 ***
27475096-GTC-G 25328949-GTC-G P1_Y2 ***
27520768-GAAAACC-AAAATCT 25374621-GAAAACC-AAAATCT P1_Y2 ***
27677796-TCCACCTGCCATGGCCTCC-AGAGA 25531649-TCCACCTGCCATGGCCTCC-AGAGA P1_Y2 ***
27699715-TACAG-CACAC 25553568-TACAG-CACAC P1_Y2 ***
28491339-A-ACACCCCCAT 26345192-A-ACACCCCCAT ***
27807538-CT-C 25661391-CT-C P1_Y2 ***
27833713-TG-CA 25687566-TG-CA P1_Y2 ***
27957080-ATAA-TGAT 25810933-ATAA-TGAT P1_Y2 ***
28253491-C-CAAAACAAA 26107344-C-CAAAACAAA P1_b4 32×A***
28336668-C-CAA 26190521-C-CAA P1_b4 31×A***
28491336-A-AAAAACACCCC 26345189-A-AAAAACACCCC ***
28491337-A-AAACACCCCC 26345190-A-AAACACCCCC ***
20119683-AGG-CTC 18007803-AGG-CTC P5_Dst ***
20005792-GA-AG 17893912-GA-AG P5_Prx ***
7383875-AGGG-A 7515834-AGGG-A ***
13140122-CTCG-C 10629608-CTCG-C ***
9935347-TTA-ATG 10097738-TTA-ATG ***
9962875-CAC-AAA 10125266-CAC-AAA ***
10019059-AAGGGGGTA-GAGGTGGTG 10181450-AAGGGGGTA-GAGGTGGTG ***
10084312-C-CTCA 10246703-C-CTCA ***
13129674-TA-CT 10619160-TA-CT ***
13140119-AA-CC 10629605-AA-CC ***
13140123-TCGCACTCC-T 10629609-TCGCACTCC-T ***
7360567-TAAA-T 7492526-TAAA-T 13×A***
13142458-GCCACTCTACTT-TCCTCTCCACTC 10631944-GCCACTCTACTT-TCCTCTCCACTC ***
13203989-GTGATAATG-TTATGATA 11048313-GTGATAATG-TTATGATA ***
13411434-GT-G 11255758-GT-G ***
13430282-CACCT-TACCC 11274606-CACCT-TACCC ***
13434609-CATGA-AATGT 11278933-CATGA-AATGT ***
13455749-CATTCCATTCCATTCCATTCCACTCA-C 11300073-CATTCCATTCCATTCCATTCCACTCA-C ***
9507982-C-CTTTTTTT 9670373-C-CTTTTTTT 34×T***
7269610-C-CTTTTTT 7401569-C-CTTTTTT 22×T***
13467390-ACTC-TCTG 11311714-ACTC-TCTG ***
4763314-C-CA 4895273-C-CA ***
8367622-C-CG 8499581-C-CG ***
10084319-TCA-T 10246710-TCA-T ***
21987362-G-GTA 19825476-G-GTA ***
26120277-C-T 23974130-C-T P1_Y1 ***
2772512-CA-C 2904471-CA-C 25×A***
4521612-T-TAAAAAAA 4653571-T-TAAAAAAA 17×A***
4765550-AT-A 4897509-AT-A 10×T***
7128621-CGTGTGTGTGTGTGTGTGT-C 7260580-CGTGTGTGTGTGTGTGTGT-C 23×GT***
5344511-TC-T 5476470-TC-T ***
5492439-C-CTTTT 5624398-C-CTTTT 18×T***
5786608-C-CAAAAAAA 5918567-C-CAAAAAAA 20×A***
6074690-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTC 6206649-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG-ATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTC ***
6236210-TG-CT 6368169-TG-CT IR3_Dst ***
6236227-A-AC 6368186-A-AC IR3_Dst ***
7021709-CTTTTT-C 7153668-CTTTTT-C 17×T***
13460179-TTAA-GCAG 11304503-TTAA-GCAG ***
13474820-CCCC-TCCA 11319144-CCCC-TCCA ***
19940227-CT-AC 17828347-CT-AC P5_Prx ***
18447905-CTGAGTT-C 16336025-CTGAGTT-C P6_Dst ***
15118452-T-TA 13006539-T-TA 25×A***
15294165-GTCCCA-G 13182264-GTCCCA-G ***
15420132-C-CAAAAAAAAAAAAAA 13308252-C-CAAAAAAAAAAAAAA 18×A***
17332750-C-CAAAA 15220870-C-CAAAA 22×A***
18346494-TGTGTG-CATGCA 16234614-TGTGTG-CATGCA P6_Prx ***
18445797-TTCCCAG-ATTCCAA 16333917-TTCCCAG-ATTCCAA P6_Dst ***
18612759-GTATATA-G 16500879-GTATATA-G 15×TA***
14698458-C-CAAAAAAAAAAAAAAAAAA 12586524-C-CAAAAAAAAAAAAAAAAAA 19×A***
19189430-C-CTTTTTTTT 17077550-C-CTTTTTTTT 35×T***
19487658-TAGTCGTTTTGATTTGCATTTCTCTG-CACCAGTTAGA 17375778-TAGTCGTTTTGATTTGCATTTCTCTG-CACCAGTTAGA ***
19510264-C-CTTTTTTTTTTTTTT 17398384-C-CTTTTTTTTTTTTTT 27×T***
19618461-TTTC-GTTT 17506581-TTTC-GTTT P5_Prx ***
19786923-AATC-CATT 17675043-AATC-CATT P5_Prx ***
19940216-CAATT-TAATC 17828336-CAATT-TAATC P5_Prx ***
14776921-TAC-AAA 12664990-TAC-AAA ***
14658330-ATC-TTT 12546395-ATC-TTT ***
13484410-CC-GG 11328734-CC-GG ***
13622298-GAAGA-AAAGC 11466622-GAAGA-AAAGC ***
13485341-ACAAG-TCAATC 11329665-ACAAG-TCAATC ***
13489061-CGCCCTCCA-AGCCTTCCC 11333385-CGCCCTCCA-AGCCTTCCC ***
13503524-TATAT-C 11347848-TATAT-C ***
13538212-TTTG-CTTA 11382536-TTTG-CTTA ***
13538257-GGAC-AGAT 11382581-GGAC-AGAT ***
13579528-TCTCAAAAAAAAAAAAAAAAAAAAAAACAGAAAC-CCTCAAAAAGAAAAAAAAA 11423852-TCTCAAAAAAAAAAAAAAAAAAAAAAACAGAAAC-CCTCAAAAAGAAAAAAAAA ***
13648116-TAGTTG-CAGTGGACACA 11492440-TAGTTG-CAGTGGACACA ***
14624252-TACACACACAC-T 12512452-TACACACACAC-T 21×AC***
13652259-ATAAAT-A 11496583-ATAAAT-A ***
13708381-GAGAAGAGACA-G 11552705-GAGAAGAGACA-G ***
13819940-CAATTGCATCTAAA-GAAT 11699234-CAATTGCATCTAAA-GAAT ***
13842631-CGGAATGGAAAGGAA-C 11721925-CGGAATGGAAAGGAA-C ***
13864536-GAATGGTATGTCATT-G 11743830-GAATGGTATGTCATT-G ***
13864542-TATGTCATT-AATG 11743836-TATGTCATT-AATG ***
14609825-TAT-AAA 12498027-TAT-AAA ***
26120283-T-C 23974136-T-C P1_Y1 ***
25656946-T-C 23510799-T-C P1_b3 ***
26113254-C-A 23967107-C-A P1_Y1 ***
6319066-C-A 6451025-C-A IR3_Dst ***
6197685-G-T 6329644-G-T IR3_Dst ***
6236208-T-C 6368167-T-C IR3_Dst ***
6236210-T-C 6368169-T-C IR3_Dst ***
6236211-G-T 6368170-G-T IR3_Dst ***
6236219-A-T 6368178-A-T IR3_Dst ***
6247711-A-G 6379670-A-G IR3_Dst ***
6319069-C-T 6451028-C-T IR3_Dst ***
6164694-A-T 6296653-A-T IR3_Dst ***
6328315-A-C 6460274-A-C IR3_Dst ***
7438298-C-A 7570257-C-A ***
8323238-G-A 8455197-G-A ***
9040205-A-T 9202596-A-T ***
9569787-G-A 9732178-G-A IR3_Prx ***
9569798-T-A 9732189-T-A IR3_Prx ***
6197234-C-A 6329193-C-A IR3_Dst ***
5474834-A-C 5606793-A-C ***
9570708-G-A 9733099-G-A IR3_Prx ***
4151546-T-G 4283505-T-G ***
13485309-T-C 11329633-T-C ***
13467129-C-A 11311453-C-A ***
27922206-T-G 25776059-T-G P1_Y2 ***
13484382-A-T 11328706-A-T ***
24278326-G-A 22132179-G-A P3_b1 ***
3259797-G-A 3391756-G-A ***
4220849-T-A 4352808-T-A ***
4846995-G-A 4978954-G-A ***
4220864-G-C 4352823-G-C ***
4778194-G-A 4910153-G-A ***
4817353-C-T 4949312-C-T ***
4819865-T-A 4951824-T-A ***
4819871-C-T 4951830-C-T ***
4846993-T-C 4978952-T-C ***
9569820-G-C 9732211-G-C IR3_Prx ***
9570750-G-A 9733141-G-A IR3_Prx ***
13400899-C-T 11245223-C-T ***
13468677-A-T 11313001-A-T ***
13366845-C-T 11211169-C-T ***
13384873-T-C 11229197-T-C ***
13393281-G-C 11237605-G-C ***
13465394-A-T 11309718-A-T ***
13465411-G-C 11309735-G-C ***
13467600-C-T 11311924-C-T ***
13478758-C-T 11323082-C-T ***
13203991-G-T 11048315-G-T ***
13479480-G-T 11323804-G-T ***
13481418-T-A 11325742-T-A ***
13482899-G-T 11327223-G-T ***
13483814-T-A 11328138-T-A ***
13484363-C-T 11328687-C-T ***
13484372-C-A 11328696-C-A ***
13364428-T-C 11208752-T-C ***
13109944-T-A 10599430-T-A ***
9571868-T-G 9734259-T-G IR3_Prx 10×TG***
9936849-T-C 10099240-T-C ***
9599044-G-T 9761435-G-T IR3_Prx ***
9599071-C-T 9761462-C-T IR3_Prx ***
9599081-A-G 9761472-A-G IR3_Prx ***
9687792-A-G 9850183-A-G IR3_Prx ***
9687803-C-T 9850194-C-T IR3_Prx ***
9687815-C-T 9850206-C-T IR3_Prx ***
9936852-A-C 10099243-A-C ***
13109834-G-C 10599320-G-C ***
10025324-G-T 10187715-G-T ***
10039922-G-A 10202313-G-A ***
10084325-C-G 10246716-C-G ***
10084328-A-T 10246719-A-T ***
10101646-A-T 10264037-A-T ***
10101659-T-G 10264050-T-G ***
13108777-A-G 10598263-A-G ***
22250493-G-T 20088607-G-T DYZ19 ***
9687831-T-G 9850222-T-G IR3_Prx ***
13725359-C-T 11569683-C-T ***
58872339-G-T 56718532-C-A ***
22245736-AG-A 20083850-AG-A DYZ19 ***
13249314-A-G 11093638-A-G ***
26194746-G-A 24048599-G-A P1_Y1 ***
13468730-G-A 11313054-G-A BY85797 ***
10084315-C-A 10246706-C-A ***
58872337-G-A 56718534-C-T ***
13460165-GTG-TTC 11304489-GTG-TTC ***
58837520-C-T 56753351-G-A 9×CCATT***
22481219-TTTC-GTTT 20319333-TTTC-GTTT DYZ19 ***
10011303-A-G 10173694-A-G ***
58819354-N-A 56771517-N-T ***
58819352-N-C 56771519-N-G ***
6192769-C-A 6324728-C-A IR3_Dst ***
22223439-T-A 20061553-T-A DYZ19 ***
58844900-A-C 56745971-T-G ***
26260483-A-C 24114336-A-C P1_Y1 ***
22309436-A-T 20147550-A-T DYZ19 ***
13557130-C-T 11401454-C-T ***
13392947-T-C 11237271-T-C ***
13431439-T-C 11275763-T-C ***
13728287-T-A 11572611-T-A ***
22268245-T-G 20106359-T-G DYZ19 ***
58874539-A-C 56716332-T-G ***
28491347-G-T 26345200-G-T ***
58820404-C-T 56770467-G-A ***
13476136-CAAGC-TAAGA 11320460-CAAGC-TAAGA ***
58820437-A-C 56770434-T-G ***
58848518-AG-TC 56742352-CT-GA ***
13469933-AC-CA 11314257-AC-CA ***
58848497-ATG-TTC 56742372-CAT-GAA ***
13129621-G-A 10619107-G-A ***
13708398-A-C 11552722-A-C ***
13460172-G-T 11304496-G-T ***
22223460-A-C 20061574-A-C DYZ19 ***
58819353-N-C 56771518-N-G ***
13223622-G-A 11067946-G-A ***
13392883-G-A 11237207-G-A ***
58874441-ATCCC-TTCCA 56716426-GGGAT-TGGAA ***
3253844-A-T 3385803-A-T F15037 ***
5234764-C-T 5366723-C-T 19×T***
13392904-G-A 11237228-G-A ***
13444981-C-T 11289305-C-T ***
7026276-C-T 7158235-C-T ***
13223603-G-A 11067927-G-A ***
58870539-A-AT 56720330-G-GA ***
24278330-G-A 22132183-G-A P3_b1 9×GGAA***
13468705-T-A 11313029-T-A ***
22274010-C-T 20112124-C-T DYZ19 ***
22332725-T-C 20170839-T-C DYZ19 ***
13364441-G-A 11208765-G-A ***
22344317-A-T 20182431-A-T DYZ19 ***
58870585-TTAATTCGAG-CT 56720277-CTCGAATTAA-AG ***
58859176-AGCGGA-C 56731690-TCCGCT-G ***
58820421-T-C 56770450-A-G ***
58891644-T-C 56699227-A-G ***
58830762-A-T 56760109-T-A ***
58833644-C-A 56757227-G-T ***
58833675-A-T 56757196-T-A ***
58842291-G-T 56748580-C-A ***
58845986-A-T 56744885-T-A ***
58847285-A-C 56743586-T-G ***
58907137-G-T 56683734-C-A ***
58847259-AG-CC 56743611-CT-GG ***
58908575-T-C 56682296-A-G ***
4909353-TG-CA 5041312-TG-CA ***
13734147-TC-GA 11578471-TC-GA ***
13808659-TTATTCAAAA-T 11687953-TTATTCAAAA-T ***
13864656-GACTCA-G 11743950-GACTCA-G ***
58819354-N-NTCCA ***
58823350-T-TC 56767519-T-TG ***
13489019-T-A 11333343-T-A ***
13734088-C-T 11578412-C-T ***
25953769-G-T 23807622-G-T P1_Y1 ***
22322693-G-T 20160807-G-T DYZ19 ***
22309936-A-T 20148050-A-T DYZ19 ***
22311533-T-C 20149647-T-C DYZ19 ***
22322129-A-G 20160243-A-G DYZ19 ***
22322460-G-C 20160574-G-C DYZ19 ***
22322487-G-A 20160601-G-A DYZ19 ***
22322504-C-G 20160618-C-G DYZ19 ***
22329935-A-T 20168049-A-T DYZ19 ***
22308526-C-T 20146640-C-T DYZ19 ***
22329940-G-T 20168054-G-T DYZ19 ***
22335808-C-T 20173922-C-T DYZ19 ***
22338092-G-T 20176206-G-T DYZ19 ***
22343515-C-T 20181629-C-T DYZ19 ***
22344062-G-T 20182176-G-T DYZ19 ***
22349269-T-C 20187383-T-C DYZ19 ***
22308528-A-G 20146642-A-G DYZ19 ***
22308389-T-C 20146503-T-C DYZ19 ***
22360112-A-T 20198226-A-T DYZ19 ***
22189833-A-G 20027947-A-G ***
21021889-A-G 18860003-A-G P4_Dst ***
21021891-G-C 18860005-G-C P4_Dst ***
21021892-C-A 18860006-C-A P4_Dst ***
21021894-G-A 18860008-G-A P4_Dst ***
21196973-T-A 19035087-T-A ***
21862082-A-G 19700196-A-G ***
22223367-T-C 20061481-T-C DYZ19 ***
22292398-A-G 20130512-A-G DYZ19 ***
22231678-T-C 20069792-T-C DYZ19 ***
22235028-A-G 20073142-A-G DYZ19 ***
22235040-T-A 20073154-T-A DYZ19 ***
22235306-A-C 20073420-A-C DYZ19 ***
22250350-A-G 20088464-A-G DYZ19 ***
22250480-A-G 20088594-A-G DYZ19 ***
22266219-T-A 20104333-T-A DYZ19 ***
22358762-T-C 20196876-T-C DYZ19 ***
22361075-A-T 20199189-A-T DYZ19 ***
20686574-A-G 18524688-A-G P4_Prx ***
13430263-C-T 11274587-C-T ***
24015825-T-C 21869678-T-C ***
24278322-G-A 22132175-G-A P3_b1 ***
24278462-A-T 22132315-A-T P3_b1 ***
24539595-A-G 22393448-A-G P3_t2 ***
24561480-A-T 22415333-A-T P3_t2 ***
25639782-T-G 23493635-T-G P1_b3 ***
25656955-G-C 23510808-G-C P1_b3 ***
24015804-G-A 21869657-G-A ***
25792895-A-C 23646748-A-C P1_b3 ***
25876795-G-T 23730648-G-T P1_Y1 ***
25880487-T-A 23734340-T-A P1_Y1 ***
25883934-T-C 23737787-T-C P1_Y1 ***
25920097-T-G 23773950-T-G P1_Y1 ***
25920107-C-T 23773960-C-T P1_Y1 ***
24015820-C-A 21869673-C-A ***
23193098-G-A 21031212-G-A ***
22361092-A-C 20199206-A-C DYZ19 ***
22421427-G-C 20259541-G-C DYZ19 ***
22361093-C-A 20199207-C-A DYZ19 ***
22361553-A-T 20199667-A-T DYZ19 ***
22364876-A-G 20202990-A-G DYZ19 ***
22364901-T-G 20203015-T-G DYZ19 ***
22367180-A-T 20205294-A-T DYZ19 ***
22420937-C-A 20259051-C-A DYZ19 ***
22421614-T-C 20259728-T-C DYZ19 ***
22802905-G-T 20641019-G-T ***
22421634-A-T 20259748-A-T DYZ19 ***
22433359-C-G 20271473-C-G DYZ19 ***
22457038-T-G 20295152-T-G DYZ19 ***
22481225-T-C 20319339-T-C DYZ19 ***
22496009-G-A 20334123-G-A DYZ19 ***
22498612-G-A 20336726-G-A DYZ19 ***
22504760-G-A 20342874-G-A A4414 DYZ19 ***
21012778-T-C 18850892-T-C P4_Dst ***
20581595-T-C 18419709-T-C P5_Dst ***
13740826-G-A 11585150-G-A ***
19696625-G-A 17584745-G-A P5_Prx ***
19029328-T-C 16917448-T-C ***
19598514-G-A 17486634-G-A P5_Prx ***
19600501-T-C 17488621-T-C P5_Prx ***
19618461-T-G 17506581-T-G P5_Prx ***
19618464-C-T 17506584-C-T P5_Prx ***
19618471-T-C 17506591-T-C P5_Prx ***
19706207-C-T 17594327-C-T P5_Prx ***
18445793-T-A 16333913-T-A P6_Dst ***
19753407-T-C 17641527-T-C P5_Prx ***
19754220-A-T 17642340-A-T P5_Prx ***
19754226-T-C 17642346-T-C P5_Prx ***
19759381-T-C 17647501-T-C P5_Prx ***
19805295-C-G 17693415-C-G P5_Prx ***
19844422-T-G 17732542-T-G P5_Prx ***
19029318-G-A 16917438-G-A ***
18346485-G-T 16234605-G-T P6_Prx ***
19916880-G-T 17805000-G-T P5_Prx ***
15612434-G-T 13500554-G-T ***
13743339-A-G 11587663-A-G ***
13743346-C-A 11587670-C-A ***
14513379-T-C 12401584-T-C ***
14658344-A-G 12546409-A-G ***
14658367-T-C 12546432-T-C ***
15244220-G-A 13132306-G-A ***
15649887-G-A 13538007-G-A ***
18291103-G-T 16179223-G-T P6_Prx ***
15804730-G-A 13692850-G-A ***
15884163-G-A 13772283-G-A ***
16102339-C-T 13990459-C-T P8_Prx ***
16102340-C-T 13990460-C-T P8_Prx ***
16102364-C-T 13990484-C-T P8_Prx ***
16349831-A-T 14237951-A-T ***
16784428-G-A 14672548-G-A 10×A***
19860515-A-G 17748635-A-G P5_Prx ***
19916887-C-A 17805007-C-A P5_Prx ***
20571197-A-T 18409311-A-T P5_Dst ***
20402615-A-G 18240729-A-G P5_Dst ***
20119744-C-A 18007864-C-A P5_Dst ***
20294818-G-A 18132932-G-A P5_Dst ***
20331834-A-T 18169948-A-T P5_Dst ***
20331972-G-A 18170086-G-A P5_Dst ***
20331973-T-G 18170087-T-G P5_Dst ***
20396067-G-A 18234181-G-A P5_Dst ***
20432193-A-C 18270307-A-C P5_Dst ***
20119698-C-T 18007818-C-T P5_Dst ***
20432197-C-T 18270311-C-T P5_Dst ***
20432198-A-C 18270312-A-C P5_Dst ***
20473560-C-G 18311674-C-G P5_Dst ***
20527845-A-G 18365959-A-G P5_Dst ***
20571150-T-C 18409264-T-C P5_Dst ***
20571182-C-T 18409296-C-T P5_Dst ***
20119726-T-C 18007846-T-C P5_Dst ***
20119678-C-T 18007798-C-T P5_Dst ***
19916920-G-T 17805040-G-T P5_Prx ***
20010105-T-A 17898225-T-A P5_Prx ***
19940216-C-T 17828336-C-T P5_Prx ***
20003765-G-A 17891885-G-A P5_Prx ***
20010023-G-T 17898143-G-T P5_Prx ***
20010041-A-G 17898161-A-G P5_Prx ***
20010092-G-A 17898212-G-A P5_Prx ***
20010103-C-A 17898223-C-A P5_Prx ***
20010108-T-C 17898228-T-C P5_Prx ***
20119672-C-A 18007792-C-A P5_Dst ***
20010110-T-A 17898230-T-A P5_Prx ***
20069834-G-T 17957954-G-T P5_Dst ***
20069846-T-A 17957966-T-A P5_Dst ***
20070235-T-C 17958355-T-C P5_Dst ***
20079985-C-T 17968105-C-T P5_Dst ***
20080001-G-A 17968121-G-A P5_Dst ***
20089063-A-C 17977183-A-C P5_Dst ***
5261698-C-CAAAAAAAAAAAAAAAAAAAAAAAAAA 5393657-C-CAAAAAAAAAAAAAAAAAAAAAAAAAA 48×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: FQESS*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs20
Variant counts last updated 2018-07-08 21:01:07.

* BED data not available. Using default values.


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