Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > ZZ19 > Z31644 > A4041 > BY33282

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
IN13432
BigY2
IN13432
27988489-A-C 25842342-A-C P1_Y2 A+
21745012-G-A A+
26094113-A-G 23947966-A-G P1_Y1 A*A*
13462447-A-T 11306771-A-T A*
20959147-C-T 18797261-C-T P4_Dst A*
13694978-A-G 11539302-A-G A*
26074667-T-A 23928520-T-A P1_Y1 A*A*
25882718-T-A 23736571-T-A P1_Y1 A*A*
28817749-A-T 26671602-A-T A*
25559929-G-C 23413782-G-C P1_gr1 A*
25553172-C-T 23407025-C-T P1_gr1 A*
13462373-G-A 11306697-G-A A*
26321968-G-A 24175821-G-A P1_Y1 A*
25908697-G-A 23762550-G-A P1_Y1 A*A*
20685031-G-A 18523145-G-A P4_Prx A*A*
22274589-G-A 20112703-G-A DYZ19 A*
23336467-G-A 21174581-G-A BY168723 YY++
23297980-G-A 21136094-G-A BY168714 YY++
8250962-C-A 8382921-C-A BY166336 YY++
23996365-G-A 21850218-G-A BY168857 Y++
8663939-A-G 8795898-A-G BY166501 YY++
8696006-A-G 8827965-A-G FT115934 YY+**
8735773-T-G 8867732-T-G FT115961 Y+**
16437067-G-T 14325187-G-T BY167300 YY++
15902264-T-C 13790384-T-C BY167198 YY++
15845339-C-A 13733459-C-A BY167176 YY++
15725704-C-T 13613824-C-T BY167149 YY++
8041461-T-G 8173420-T-G BY166279 YY++
8226867-G-A 8358826-G-A BY166329 YY++
22913258-T-C 20751372-T-C BY168626 YY++
18220845-AC-A 16108965-AC-A ++
19545625-A-T 17433745-A-T BY168167 YY++
5420869-A-G 5552828-A-G BY165905 ++
7265274-A-G 7397233-A-G BY166085 YY++
7593052-T-C 7725011-T-C BY166145 YY++
7616786-C-T 7748745-C-T BY166151 YY++
7817709-G-C 7949668-G-C BY166204 YY++
18203161-G-A 16091281-G-A BY167830 YY++
16869056-T-A 14757176-T-A BY167412 YY++
21409262-A-G 19247376-A-G BY168302 Y++
17852465-C-T 15740585-C-T FT118134 YY+***
17817823-G-C 15705943-G-C BY167697 YY++
22444934-T-G 20283048-T-G BY219514 DYZ19 **+
22484390-G-T 20322504-G-T BY224612 DYZ19 **+
17149196-T-G 15037316-T-G BY167491 YY++
22735619-A-G 20573733-A-G BY168583 YY++
22440229-T-G 20278343-T-G BY218773 DYZ19 ++
9445507-G-A 9607898-G-A BY166665 YY++
10028532-T-G 10190923-T-G Y+**
17309929-G-T 15198049-G-T FT117895 YY+
11667825-A-G +
19463407-T-C 17351527-T-C FT118774 Y+
13822238-G-T 11701532-G-T BY166748 ++
13332701-A-C 11177025-A-C +
8732644-T-C 8864603-T-C FT115958 Y+
13585747-G-A 11430071-G-A BY210464 ++
5544517-A-C 5676476-A-C FT114486 +
5400175-A-G 5532134-A-G FT114376 +
4760859-T-G 4892818-T-G FT113880 +
23288049-T-G 21126163-T-G FT119694 Y+
4355665-C-T 4487624-C-T FT113575 +
3989441-C-T 4121400-C-T FT113286 +
3336603-T-A 3468562-T-A FT112795 +
18043052-C-T 15931172-C-T FT118214 YY+
28637995-A-G 26491848-A-G FT120092 +
15431772-T-A 13319892-T-A Y6716 FGC16202 F11702 YY+
15458316-T-C 13346436-T-C BY167069 YY++
13483502-C-T 11327826-C-T BY210384 ++
28797431-T-C 26651284-T-C BY33006 ++
26467016-A-G 24320869-A-G P1_Y1 *
4864250-C-CGT 4996209-C-CGT 16×GT*
22255708-A-T 20093822-A-T DYZ19 ****
6138990-CGTGT-C 6270949-CGTGT-C IR3_Dst 17×GT****
18794286-C-A 16682406-C-A **
19159914-C-A 17048034-C-A **
13512933-G-T 11357257-G-T **
13520803-C-A 11365127-C-A **
18239531-C-A 16127651-C-A **
19183518-T-A 17071638-T-A **
13600655-C-T 11444979-C-T **
17864908-T-C 15753028-T-C **
19271225-G-A 17159345-G-A **
18716616-AAATAC-A 16604736-AAATAC-A **
19271240-C-G 17159360-C-G **
18345946-AC-A 16234066-AC-A P6_Prx **
14027290-T-C 11906584-T-C **
17645655-C-A 15533775-C-A **
14591786-T-G 12479986-T-G **
15657216-C-A 13545336-C-A **
15707012-C-A 13595132-C-A **
15324183-G-A 13212301-G-A **
19356832-G-A 17244952-G-A **
15174538-TA-T 13062624-TA-T **
15077986-C-A 12966076-C-A **
16042778-A-G 13930898-A-G **
14718502-G-A 12606570-G-A **
16349861-C-A 14237981-C-A **
17576213-C-T 15464333-C-T **
14493651-G-A 12381848-G-A **
16411165-T-C 14299285-T-C **
16418500-G-C 14306620-G-C **
16712907-C-A 14601027-C-A **
16739512-C-A 14627632-C-A **
14490903-A-T 12370172-A-T **
14293575-C-CTT 12172869-C-CTT **
15475226-C-A 13363346-C-A **
17527241-C-A 15415361-C-A **
19271249-T-C 17159369-T-C **
22069787-C-A 19907901-C-A **
19358575-C-A 17246695-C-A **
28694367-G-C 26548220-G-C **
23742470-G-A 21580584-G-A FT177892 **
24621256-T-TTG 22475109-T-TTG P3_t2 **
25927788-A-T 23781641-A-T P1_Y1 **
25927790-C-G 23781643-C-G P1_Y1 **
25927814-A-T 23781667-A-T P1_Y1 **
25927837-A-T 23781690-A-T P1_Y1 **
25927840-A-T 23781693-A-T P1_Y1 **
25927857-C-G 23781710-C-G P1_Y1 **
25927862-A-T 23781715-A-T P1_Y1 **
25927870-A-T 23781723-A-T P1_Y1 **
27002394-G-A 24856247-G-A P1_r4 **
28479590-T-C 26333443-T-C **
56763492-G-A **
23529612-T-C 21367726-T-C **
56836728-G-GCATTC **
29924-A-T ****
2790771-C-A 2922730-C-A **
7300718-G-A 7432677-G-A **
10652027-C-A **
10678720-C-T **
13387646-G-C 11231970-G-C **
13607557-C-A 11451881-C-A **
20751111-G-T 18589225-G-T P4_Prx **
22420082-A-G 20258196-A-G DYZ19 **
23287235-T-C 21125349-T-C **
28668606-T-G 26522459-T-G **
16390-A-T **
23529622-A-ACT 21367736-A-ACT **
23476020-TG-T 21314134-TG-T **
19463759-A-G 17351879-A-G **
21138699-A-G 18976813-A-G **
19623705-A-T 17511825-A-T P5_Prx **
19815042-A-T 17703162-A-T P5_Prx **
19815070-A-T 17703190-A-T P5_Prx **
19984886-A-AG 17873006-A-AG P5_Prx **
20669410-T-A 18507524-T-A P4_Prx **
20829861-A-G 18667975-A-G P4_Gap **
20946752-C-A 18784866-C-A P4_Dst **
20946757-C-A 18784871-C-A P4_Dst **
20946761-A-C 18784875-A-C P4_Dst **
20946769-A-C 18784883-A-C P4_Dst **
20946783-C-A 18784897-C-A P4_Dst **
20946790-G-T 18784904-G-T P4_Dst **
20946821-A-C 18784935-A-C P4_Dst **
21190431-C-A 19028545-C-A **
23466410-G-A 21304524-G-A **
21550031-C-A 19388145-C-A **
21694259-C-A 19532373-C-A **
10998469-C-A **
22241133-T-A 20079247-T-A DYZ19 ****
22299803-T-C 20137917-T-C DYZ19 **
22562487-G-A 20400601-G-A **
22902069-C-A 20740183-C-A **
23281266-T-C 21119380-T-C **
23281270-T-C 21119384-T-C **
23281276-T-C 21119390-T-C **
23281280-T-C 21119394-T-C **
23281287-C-T 21119401-C-T **
23281288-A-G 21119402-A-G **
13466026-C-A 11310350-C-A **
14159556-C-A 12038850-C-A **
10980244-C-G **
26377810-C-A 24231663-C-A P1_Y1 **
3550741-C-A 3682700-C-A **
10654256-C-T **
8014929-T-C 8146888-T-C **
16052092-C-A 13940212-C-A **
13940141-AAT-A 11819435-AAT-A **
4114676-C-A 4246635-C-A **
14373788-G-A 12253084-G-A **
17768055-C-A 15656175-C-A **
13885752-C-A 11765046-C-A **
14509498-A-G 12397703-A-G **
10761191-CA-C **
10761186-T-TG **
17504945-C-A 15393065-C-A **
11033557-C-A **
13975599-C-A 11854893-C-A **
17679025-C-A 15567145-C-A **
15870783-C-A 13758903-C-A **
10781115-T-C **
4230252-C-A 4362211-C-A **
4211143-G-T 4343102-G-T **
2812852-A-C 2944811-A-C **
2696514-T-G 2828473-T-G **
23062906-C-A 20901020-C-A **
15917536-C-A 13805656-C-A **
13728857-A-G 11573181-A-G **
13996734-C-A 11876028-C-A **
15993732-C-A 13881852-C-A **
10980239-C-G **
10763133-T-G **
10763118-TTTCAC-T **
13466014-AGT-A 11310338-AGT-A **
2817852-C-A 2949811-C-A **
8014924-T-C 8146883-T-C **
15916634-C-A 13804754-C-A **
10988831-A-C **
5219098-G-A 5351057-G-A **
10899980-C-T **
14563932-C-A 12452132-C-A **
18772491-C-A 16660611-C-A **
5204576-C-A 5336535-C-A **
10781129-C-T **
10900012-A-T **
10900010-C-T **
10899979-T-A **
15439811-T-TA 13327931-T-TA **
27791980-GCTTCTT-G 25645833-GCTTCTT-G P1_Y2 9×CTT**
15397251-G-T 13285371-G-T **
10935998-G-T **
4408487-C-A 4540446-C-A **
58982829-G-A 56836682-G-A **
8014914-A-C 8146873-A-C **
18565060-T-A 16453180-T-A **
23742514-C-A 21580628-C-A **
4254846-C-A 4386805-C-A **
10988828-T-C **
22325364-G-A 20163478-G-A DYZ19 **
10999971-C-T **
7853197-G-A 7985156-G-A Y15585 **
19271229-C-G 17159349-C-G **
3332174-C-A 3464133-C-A **
14234644-C-A 12113938-C-A **
10792127-C-A **
10664789-C-A **
56844027-G-T **
10781109-T-C **
10782855-C-A **
22995850-C-A 20833964-C-A **
8142866-A-G 8274825-A-G **
10896357-C-A **
14000510-C-A 11879804-C-A **
10781121-T-A **
4887441-C-A 5019400-C-A **
30049-A-T **
5472417-A-G 5604376-A-G **
7975915-T-C 8107874-T-C **
10781084-T-C **
10781083-A-T **
7853221-A-G 7985180-A-G **
7853234-A-G 7985193-A-G **
7853235-A-C 7985194-A-C **
10693325-T-A **
7853238-T-A 7985197-T-A **
7853241-TTTTTGTTG-T 7985200-TTTTTGTTG-T **
10773444-C-A **
7922597-G-T 8054556-G-T **
7957061-G-A 8089020-G-A **
10763174-T-G **
7853217-G-A 7985176-G-A **
10752504-C-A **
8014925-G-A 8146884-G-A **
8052673-G-A 8184632-G-A **
8253720-C-A 8385679-C-A **
8694274-G-T 8826233-G-T **
6694113-C-A 6826072-C-A **
10751211-C-T **
9777540-G-T 9939931-G-T **
9777889-G-T 9940280-G-T **
10652277-C-A **
10672957-C-A **
7853220-C-T 7985179-C-T **
10751206-A-T **
7853211-G-A 7985170-G-A **
6903806-A-T 7035765-A-T **
7206907-C-A 7338866-C-A **
7083884-T-A 7215843-T-A **
7042705-T-A 7174664-T-A **
7287968-A-T 7419927-A-T **
10800586-A-G **
6919350-C-A 7051309-C-A **
7247583-A-G 7379542-A-G **
7353555-C-T 7485514-C-T **
7216675-G-A 7348634-G-A **
7853205-T-G 7985164-T-G **
10793112-T-G **
10781086-C-T **
7609458-C-A 7741417-C-A **
6792456-C-A 6924415-C-A **
19405055-A-AT 17293175-A-AT 10×T***
10951775-C-A ***
2718881-CTTT-C,CTT 2850840-CTTT-C,CTT 21×T***
21545501-C-A 19383615-C-A ***
10987217-CATTCC-C,CATTCA ***
13466234-A-G 11310558-A-G ***
10688957-C-A ***
17596866-C-A 15484986-C-A ***
14771200-G-A 12659269-G-A ***
3901437-T-C 4033396-T-C ***
14745110-C-T 12633179-C-T ***
14642727-C-A 12530796-C-A ***
8234364-C-A 8366323-C-A ***
16308945-G-T 14197065-G-T ***
11649390-A-G ***
22774869-CTTT-C,CT 20612983-CTTT-C,CT 21×T***
14004508-GCA-G 11883802-GCA-G 9×CA***
10885164-T-C ***
10796687-C-CG ***
19203853-C-A 17091973-C-A ***
10796688-AT-A ***
16679306-T-A 14567426-T-A ***
14815377-C-T 12703448-C-T ***
9120876-ATTT-A,ATTTTT ***
10764469-C-T ***
10801708-A-C,G ***
10826833-C-T ***
28545880-C-CAA 26399733-C-CAA 20×A***
10951717-C-A ***
21599563-A-G 19437677-A-G ***
14697177-C-A 12585243-C-A ***
9410827-C-T 9573218-C-T ***
16057202-C-A 13945322-C-A ***
16245939-C-T 14134059-C-T ***
15280106-G-A 13168205-G-A ***
18685354-C-A 16573474-C-A ***
23138731-C-T 20976845-C-T ***
3174374-CTTTTT-C 3306333-CTTTTT-C 18×T***
22505895-C-A 20344009-C-A DYZ19 ***
18698658-C-A 16586778-C-A ***
13402561-G-A 11246885-G-A ***
16599074-C-A 14487194-C-A ***
10987753-A-C,T ***
21908416-C-A 19746530-C-A ***
21615831-CA-C 19453945-CA-C ***
16440360-C-A 14328480-C-A ***
21555238-CTTTT-C,CTT 19393352-CTTTT-C,CTT 15×T***
7522960-T-A 7654919-T-A ***
21477217-CTTCTTCTTATTCTTA-C 19315331-CTTCTTCTTATTCTTA-C ***
21355052-GA-G,GAAA 19193166-GA-G,GAAA 15×A***
21318169-T-C 19156283-T-C ***
18821369-G-A 16709489-G-A ***
21117075-C-A 18955189-C-A ***
2741101-CTTTTTT-C 2873060-CTTTTTT-C 19×T***
20214248-T-C 18052362-T-C P5_Dst ***
15059512-C-A 12947604-C-A ***
21509722-C-A 19347836-C-A ***
4951954-C-A 5083913-C-A ***
10653479-A-G,T ***
15363794-C-A 13251914-C-A ***
9873643-C-A 10036034-C-A ***
18190556-C-A 16078676-C-A ***
9777869-G-T 9940260-G-T ***
9772161-C-A 9934552-C-A ***
16045103-C-A 13933223-C-A ***
15848525-GA-G 13736645-GA-G 8×A***
9415884-C-A 9578275-C-A ***
8967716-A-G 9130107-A-G ***
17190619-A-G 15078739-A-G ***
24433253-G-T 22287106-G-T ***
24381908-G-T 22235761-G-T ***
16643302-A-G 14531422-A-G ***
23745041-G-T 21583155-G-T ***
16705488-T-C 14593608-T-C ***
23640038-A-G 21478152-A-G ***
7997895-CT-C 8129854-CT-C ***
17103990-A-G 14992110-A-G ***
15382775-C-A 13270895-C-A ***
21995028-C-A 19833142-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN13432887760372682237199107
Kit: IN134321515081894839478355110
Used in age calculations1515081894839478355110
Counts of SNPs3528
Variant counts last updated 2019-11-29 02:45:43.



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