Smed
BigY2: 567596MDKA Birth: Denmark
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY2 567596 |
---|---|---|---|---|---|---|---|---|
7244795-T-G | 7376754-T-G | BY64124 | Y | Y | + | |||
13694676-G-A | 11539000-G-A | BY88892 | + | |||||
18105781-G-A | 15993901-G-A | BY120064 | Y | Y | + | |||
22053158-C-T | 19891272-C-T | BY137344 | Y | Y | + | |||
17310939-G-T | 15199059-G-T | 13×T | ** | |||||
14195817-C-A | 12075111-C-A | 14×A | ** | |||||
23505184-G-A | 21343298-G-A | ** | ||||||
14181093-G-A | 12060387-G-A | FT329097 | ** | |||||
13223476-A-G | 11067800-A-G | ** | ||||||
27759110-C-T | 25612963-C-T | P1_Y2 | ** | |||||
9403152-ATGTG-A | 9565543-ATGTG-A | 14×TG | ** | |||||
13489474-C-G | 11333798-C-G | ** | ||||||
10802195-T-C | ** | |||||||
11653454-C-A | ** | |||||||
10873205-C-A | ** | |||||||
10770683-C-T | ** | |||||||
10770689-A-ACTCCTAAACT | ** | |||||||
10770704-G-T | ** | |||||||
10770731-TCCTTTTC-T | ** | |||||||
13485629-G-A | 11329953-G-A | ** | ||||||
8760547-A-G | 8892506-A-G | ** | ||||||
8049808-A-G | 8181767-A-G | ** | ||||||
22340038-A-C | 20178152-A-C | DYZ19 | ** | |||||
10934870-T-C | ** | |||||||
11025466-G-T | ** | |||||||
19206562-C-A | 17094682-C-A | ** | ||||||
7335730-C-A | 7467689-C-A | ** | ||||||
13634329-C-A | 11478653-C-A | ** | ||||||
20332143-C-A | 18170257-C-A | P5_Dst | ** | |||||
10752325-G-A | ** | |||||||
26047527-G-T | 23901380-G-T | P1_Y1 | ** | |||||
6855332-G-T | 6987291-G-T | ** | ||||||
8737896-C-A | 8869855-C-A | ** | ||||||
16520979-T-G | 14409099-T-G | ** | ||||||
7166583-C-T | 7298542-C-T | ** | ||||||
15969881-T-A | 13858001-T-A | ** | ||||||
10802203-T-C | ** | |||||||
10885210-TCCATTC-T | ** | |||||||
13226288-C-A | 11070612-C-A | ** | ||||||
19847667-AC-A | 17735787-AC-A | P5_Prx | ** | |||||
14061355-C-T | 11940649-C-T | ** | ||||||
16520987-C-A | 14409107-C-A | ** | ||||||
23127541-C-A | 20965655-C-A | ** | ||||||
22340030-A-G | 20178144-A-G | DYZ19 | ** | |||||
9531232-G-GTT | 9693623-G-GTT | IR3_Prx | ** | |||||
11036169-C-A | ** | |||||||
3275365-T-G | 3407324-T-G | ** | ||||||
10955474-T-A | ** | |||||||
10688291-C-A | FT429076 | ** | ||||||
10688297-A-C | ** | |||||||
10688299-G-C | ** | |||||||
10776046-A-T | ** | |||||||
10661381-T-C | ** | |||||||
10661383-G-A | ** | |||||||
27807992-T-TC | 25661845-T-TC | P1_Y2 | ** | |||||
26391618-C-A | 24245471-C-A | P1_Y1 | ** | |||||
10911615-C-A | ** | |||||||
17310929-A-T | 15199049-A-T | ** | ||||||
21422178-C-A | 19260292-C-A | ** | ||||||
10955488-T-C | ** | |||||||
10955463-T-A | ** | |||||||
17616876-C-A | 15504996-C-A | ** | ||||||
21752792-G-T | ** | |||||||
3833651-TC-T | 3965610-TC-T | ** | ||||||
19117373-C-A | 17005493-C-A | ** | ||||||
10688183-T-A | ** | |||||||
18480346-G-A | 16368466-G-A | P6_Dst | ** | |||||
4129151-C-A | 4261110-C-A | ** | ||||||
10895852-A-G | ** | |||||||
17413288-C-A | 15301408-C-A | ** | ||||||
10873198-C-A | ** | |||||||
15753180-T-C | 13641300-T-C | ** | ||||||
21256000-C-A | 19094114-C-A | ** | ||||||
8102604-C-A | 8234563-C-A | ** | ||||||
19418508-G-A | 17306628-G-A | ** | ||||||
7195260-G-T | 7327219-G-T | ** | ||||||
19407627-A-T | 17295747-A-T | ** | ||||||
6241002-A-T | 6372961-A-T | IR3_Dst | ** | |||||
15258395-GA-G | 13146479-GA-G | ** | ||||||
5243377-C-A | 5375336-C-A | ** | ||||||
21543119-C-A | 19381233-C-A | ** | ||||||
21182389-C-T | 19020503-C-T | ** | ||||||
7166577-G-T | 7298536-G-T | ** | ||||||
14826548-GTTT-G | 12714615-GTTT-G | 19×T | ** | |||||
56840944-C-A | ** | |||||||
8479418-C-CT | 8611377-C-CT | ** | ||||||
27540969-C-A | 25394822-C-A | P1_Y2 | ** | |||||
15982133-G-A | 13870253-G-A | ** | ||||||
26415726-G-A | 24269579-G-A | P1_Y1 | ** | |||||
17946994-C-A | 15835114-C-A | ** | ||||||
18848488-T-C | 16736608-T-C | ** | ||||||
13987335-C-A | 11866629-C-A | ** | ||||||
18192584-C-A | 16080704-C-A | ** | ||||||
14785003-C-A | 12673073-C-A | ** | ||||||
10790260-A-T | ** | |||||||
15477290-TCAAA-T | 13365410-TCAAA-T | ** | ||||||
15012296-CTTTT-C | 12900384-CTTTT-C | 17×T | ** | |||||
17672187-C-A | 15560307-C-A | ** | ||||||
10659563-A-G | ** | |||||||
22001891-T-G | 19840005-T-G | ** | ||||||
7656763-C-A | 7788722-C-A | ** | ||||||
15542658-C-CAA | 13430778-C-CAA | 16×A | ** | |||||
19129052-G-C | 17017172-G-C | ** | ||||||
5926935-G-T | 6058894-G-T | ** | ||||||
23807576-CT-C | 21645690-CT-C | ** | ||||||
7053686-C-A | 7185645-C-A | ** | ||||||
15842710-G-T | 13730830-G-T | ** | ||||||
14220922-G-A | 12100216-G-A | ** | ||||||
4302651-C-A | 4434610-C-A | ** | ||||||
19476518-C-A | 17364638-C-A | ** | ||||||
8154121-C-A | 8286080-C-A | ** | ||||||
15050072-C-A | 12938163-C-A | ** | ||||||
10787365-A-C | ** | |||||||
7269634-C-CT | 7401593-C-CT | ** | ||||||
10693380-A-C | ** | |||||||
10825309-C-G | ** | |||||||
10873129-A-G | ** | |||||||
10873132-C-T | ** | |||||||
10873138-C-A | ** | |||||||
10873144-A-C | ** | |||||||
10873155-T-C | ** | |||||||
10873158-C-G | ** | |||||||
10873160-T-A | ** | |||||||
10873167-CCATTG-C | ** | |||||||
13523007-G-A | 11367331-G-A | ** | ||||||
15533062-T-C | 13421182-T-C | ** | ||||||
7018052-AG-T | 7150011-AG-T | ** | ||||||
20635502-A-G | 18473616-A-G | P4_Prx | ** | |||||
19529142-C-T | 17417262-C-T | ** | ||||||
10790272-T-A | ** | |||||||
10790283-C-T | ** | |||||||
5084320-T-G | 5216279-T-G | ** | ||||||
10693379-C-T | ** | |||||||
19216290-C-A | 17104410-C-A | ** | ||||||
21753678-A-TTT | ** | |||||||
16180193-C-A | 14068313-C-A | ** | ||||||
20332156-C-A | 18170270-C-A | P5_Dst | ** | |||||
16704418-C-A | 14592538-C-A | ** | ||||||
27540975-C-CCA | 25394828-C-CCA | P1_Y2 | ** | |||||
17139635-C-A | 15027755-C-A | ** | ||||||
7237862-C-A | 7369821-C-A | ** | ||||||
6855339-C-T | 6987298-C-T | 15×T | ** | |||||
10894791-G-T | ** | |||||||
26391522-T-C | 24245375-T-C | P1_Y1 | ** | |||||
14867209-C-A | 12755279-C-A | ** | ||||||
22699035-C-A | 20537149-C-A | ** | ||||||
14430996-C-A | 12310269-C-A | ** | ||||||
10802169-T-C | ** | |||||||
10802188-C-T | ** | |||||||
10802197-AT-A | ** | |||||||
10802216-C-A | ** | |||||||
10802219-T-A | ** | |||||||
10802222-A-AATTCAGAGCT | ** | |||||||
9629452-A-AC | 9791843-A-AC | IR3_Prx | ** | |||||
15375938-A-G | 13264058-A-G | ** | ||||||
16054299-G-A | 13942419-G-A | ** | ||||||
10890083-G-T | ** | |||||||
19129047-T-A | 17017167-T-A | ** | ||||||
22542451-C-G | 20380565-C-G | ** | ||||||
16528247-C-A | 14416367-C-A | ** | ||||||
18825652-G-A | 16713772-G-A | FT283278 | ** | |||||
19202751-C-A | 17090871-C-A | ** | ||||||
10825295-C-T | ** | |||||||
27903143-T-TG | 25756996-T-TG | P1_Y2 | ** | |||||
5084327-C-A | 5216286-C-A | ** | ||||||
17346414-C-A | 15234534-C-A | ** | ||||||
10776088-T-A | ** | |||||||
19244604-C-A | 17132724-C-A | FT176874 | ** | |||||
22783158-GCA-G | 20621272-GCA-G | ** | ||||||
21905309-C-A | 19743423-C-A | ** | ||||||
13801113-CGAATGGAATGGAATGGAATG-C | 11680407-CGAATGGAATGGAATGGAATG-C | 12×GAATG | ** | |||||
56841164-C-A | ** | |||||||
28515242-A-T | 26369095-A-T | ** | ||||||
27808568-G-T | 25662421-G-T | P1_Y2 | ** | |||||
18864750-C-A | 16752870-C-A | ** | ||||||
11648820-A-G | ** | |||||||
10956666-A-C | ** | |||||||
16760089-A-C | 14648209-A-C | ** | ||||||
5710066-G-T | 5842025-G-T | ** | ||||||
18035694-TTG-T | 15923814-TTG-T | ** | ||||||
11008810-C-A | ** | |||||||
16897643-CAAAAAAAAAA-C | 14785763-CAAAAAAAAAA-C | 23×A | ** | |||||
11026849-G-T | ** | |||||||
8842471-T-G | 8974430-T-G | ** | ||||||
9907451-C-T | 10069842-C-T | ** | ||||||
13273040-T-G | 11117364-T-G | ** | ||||||
6282477-G-C | 6414436-G-C | IR3_Dst | ** | |||||
16028384-C-A | 13916504-C-A | ** | ||||||
22520604-C-T | 20358718-C-T | ** | ||||||
15497000-C-A | 13385120-C-A | ** | ||||||
19201025-C-A | 17089145-C-A | ** | ||||||
7197519-T-C | 7329478-T-C | ** | ||||||
2752649-T-G | 2884608-T-G | ** | ||||||
2885478-G-T | 3017437-G-T | ** | ||||||
2975545-T-C | 3107504-T-C | ** | ||||||
2975579-C-T | 3107538-C-T | ** | ||||||
2975583-G-T | 3107542-G-T | ** | ||||||
2975587-C-A | 3107546-C-A | ** | ||||||
3011516-C-T | 3143475-C-T | ** | ||||||
3011543-A-G | 3143502-A-G | ** | ||||||
3011574-C-G | 3143533-C-G | ** | ||||||
3011618-A-G | 3143577-A-G | ** | ||||||
3011640-C-A | 3143599-C-A | ** | ||||||
3016355-C-A | 3148314-C-A | ** | ||||||
3099126-T-A | 3231085-T-A | ** | ||||||
3178771-A-G | 3310730-A-G | ** | ||||||
3275317-A-T | 3407276-A-T | ** | ||||||
3275382-T-C | 3407341-T-C | ** | ||||||
3285950-T-G | 3417909-T-G | ** | ||||||
3483057-G-C | 3615016-G-C | ** | ||||||
3833933-A-G | 3965892-A-G | ** | ||||||
4088268-T-A | 4220227-T-A | ** | ||||||
4129183-A-C | 4261142-A-C | ** | ||||||
4208834-T-C | 4340793-T-C | ** | ||||||
4224003-T-C | 4355962-T-C | ** | ||||||
4271907-G-A | 4403866-G-A | ** | ||||||
4282168-T-A | 4414127-T-A | ** | ||||||
4293040-A-C | 4424999-A-C | ** | ||||||
4293083-C-A | 4425042-C-A | ** | ||||||
4389460-T-A | 4521419-T-A | ** | ||||||
4437994-C-A | 4569953-C-A | ** | ||||||
4442568-C-A | 4574527-C-A | ** | ||||||
4628542-C-A | 4760501-C-A | ** | ||||||
4840742-A-G | 4972701-A-G | ** | ||||||
4899649-G-A | 5031608-G-A | ** | ||||||
4928855-A-G | 5060814-A-G | ** | ||||||
4928893-C-G | 5060852-C-G | ** | ||||||
4959881-C-T | 5091840-C-T | FT97677 | ** | |||||
5029228-C-A | 5161187-C-A | ** | ||||||
5084348-T-A | 5216307-T-A | ** | ||||||
5336328-C-A | 5468287-C-A | ** | ||||||
5530933-G-T | 5662892-G-T | ** | ||||||
5557364-G-A | 5689323-G-A | ** | ||||||
5796299-C-T | 5928258-C-T | ** | ||||||
6144792-G-T | 6276751-G-T | IR3_Dst | ** | |||||
6173900-G-T | 6305859-G-T | IR3_Dst | ** | |||||
6241028-G-C | 6372987-G-C | IR3_Dst | ** | |||||
6241068-A-C | 6373027-A-C | IR3_Dst | ** | |||||
6262506-A-AC | 6394465-A-AC | IR3_Dst | ** | |||||
6314981-T-A | 6446940-T-A | IR3_Dst | ** | |||||
6314998-T-C | 6446957-T-C | IR3_Dst | ** | |||||
6315005-T-G | 6446964-T-G | IR3_Dst | ** | |||||
6315082-C-A | 6447041-C-A | IR3_Dst | ** | |||||
6427019-T-A | 6558978-T-A | ** | ||||||
6461095-A-T | 6593054-A-T | ** | ||||||
6757728-G-A | 6889687-G-A | ** | ||||||
6776324-C-A | 6908283-C-A | ** | ||||||
6780644-A-T | 6912603-A-T | ** | ||||||
6828379-A-G | 6960338-A-G | ** | ||||||
6828392-A-G | 6960351-A-G | ** | ||||||
7012766-T-A | 7144725-T-A | ** | ||||||
7033327-C-A | 7165286-C-A | ** | ||||||
7156646-C-A | 7288605-C-A | ** | ||||||
7158022-C-T | 7289981-C-T | ** | ||||||
7197515-C-T | 7329474-C-T | ** | ||||||
7203913-A-G | 7335872-A-G | ** | ||||||
7208114-T-A | 7340073-T-A | ** | ||||||
7222242-C-G | 7354201-C-G | ** | ||||||
7240862-G-C | 7372821-G-C | ** | ||||||
7254018-C-A | 7385977-C-A | ** | ||||||
7269646-G-T | 7401605-G-T | ** | ||||||
7349211-T-A | 7481170-T-A | ** | ||||||
7385481-GTACTATCATATTGC-G | 7517440-GTACTATCATATTGC-G | ** | ||||||
7416718-C-G | 7548677-C-G | ** | ||||||
7416764-A-G | 7548723-A-G | ** | ||||||
7640973-A-C | 7772932-A-C | ** | ||||||
7646557-G-T | 7778516-G-T | ** | ||||||
7657028-T-G | 7788987-T-G | ** | ||||||
7759224-T-A | 7891183-T-A | ** | ||||||
8025136-C-A | 8157095-C-A | ** | ||||||
8051989-C-A | 8183948-C-A | ** | ||||||
8102534-T-A | 8234493-T-A | ** | ||||||
8102580-T-C | 8234539-T-C | ** | ||||||
8105581-G-T | 8237540-G-T | ** | ||||||
8269636-A-C | 8401595-A-C | ** | ||||||
8385289-T-G | 8517248-T-G | ** | ||||||
8766350-C-A | 8898309-C-A | ** | ||||||
8807560-T-A | 8939519-T-A | ** | ||||||
8807569-G-A | 8939528-G-A | ** | ||||||
8810323-T-A | 8942282-T-A | ** | ||||||
8816577-A-T | 8948536-A-T | ** | ||||||
8816620-C-A | 8948579-C-A | ** | ||||||
9032076-T-C | 9194467-T-C | ** | ||||||
9147052-T-G | 9309443-T-G | ** | ||||||
9424376-A-T | 9586767-A-T | ** | ||||||
9467848-C-A | 9630239-C-A | ** | ||||||
9524133-G-T | 9686524-G-T | ** | ||||||
9531122-G-T | 9693513-G-T | IR3_Prx | ** | |||||
9629430-T-G | 9791821-T-G | IR3_Prx | ** | |||||
9692035-A-G | 9854426-A-G | IR3_Prx | ** | |||||
9702899-C-T | 9865290-C-T | IR3_Prx | ** | |||||
9735395-G-T | 9897786-G-T | IR3_Prx | ** | |||||
9735423-A-T | 9897814-A-T | IR3_Prx | ** | |||||
9735437-T-C | 9897828-T-C | IR3_Prx | ** | |||||
9735478-T-C | 9897869-T-C | IR3_Prx | ** | |||||
9735481-C-G | 9897872-C-G | IR3_Prx | ** | |||||
9735485-C-A | 9897876-C-A | IR3_Prx | ** | |||||
9805254-G-A | 9967645-G-A | ** | ||||||
9858031-C-A | 10020422-C-A | FT287991 | ** | |||||
9887101-C-G | 10049492-C-G | ** | ||||||
9941275-A-G | 10103666-A-G | ** | ||||||
9967093-C-A | 10129484-C-A | ** | ||||||
9978457-G-T | 10140848-G-T | ** | ||||||
10003490-G-A | 10165881-G-A | ** | ||||||
10003596-G-A | 10165987-G-A | ** | ||||||
10026264-T-C | 10188655-T-C | ** | ||||||
10040201-A-G | 10202592-A-G | ** | ||||||
10626473-C-A | ** | |||||||
10646615-A-T | ** | |||||||
10648816-C-A | ** | |||||||
10659591-C-A | ** | |||||||
10688232-C-G | ** | |||||||
10747874-C-A | ** | |||||||
10769483-T-A | ** | |||||||
10776055-C-A | ** | |||||||
10776116-A-G | ** | |||||||
10776122-T-G | ** | |||||||
10855804-T-A | ** | |||||||
10880772-C-T | ** | |||||||
10894704-T-A | ** | |||||||
10949382-C-A | ** | |||||||
10962873-C-A | ** | |||||||
10962968-A-C | ** | |||||||
10979635-C-T | ** | |||||||
10986813-A-G | ** | |||||||
10992429-A-T | ** | |||||||
10992874-T-C | ** | |||||||
11004059-G-C | ** | |||||||
11031800-C-T | ** | |||||||
13224535-A-G | 11068859-A-G | ** | ||||||
13259189-C-T | 11103513-C-T | ** | ||||||
13486999-C-G | 11331323-C-G | ** | ||||||
13496280-T-A | 11340604-T-A | ** | ||||||
13505210-T-C | 11349534-T-C | ** | ||||||
13575582-T-G | 11419906-T-G | ** | ||||||
13596965-T-C | 11441289-T-C | ** | ||||||
11652948-T-G | ** | |||||||
11652982-A-C | ** | |||||||
11653004-G-T | ** | |||||||
13858485-G-C | 11737779-G-C | ** | ||||||
13885390-T-C | 11764684-T-C | ** | ||||||
13887973-G-T | 11767267-G-T | ** | ||||||
13895158-T-C | 11774452-T-C | ** | ||||||
13940746-A-G | 11820040-A-G | ** | ||||||
13946268-C-G | 11825562-C-G | ** | ||||||
13983919-G-C | 11863213-G-C | ** | ||||||
14011295-A-C | 11890589-A-C | ** | ||||||
14026993-T-C | 11906287-T-C | ** | ||||||
14108618-A-T | 11987912-A-T | ** | ||||||
14146102-T-C | 12025396-T-C | ** | ||||||
14146119-C-A | 12025413-C-A | ** | ||||||
14350206-C-T | 12229501-C-T | ** | ||||||
14354461-A-G | 12233756-A-G | ** | ||||||
14361638-A-T | 12240933-A-T | ** | ||||||
14420121-A-G | 12299396-A-G | ** | ||||||
14502380-T-C | 12390585-T-C | ** | ||||||
14502399-A-C | 12390604-A-C | ** | ||||||
14522372-C-A | 12410573-C-A | ** | ||||||
14528528-G-A | 12416729-G-A | ** | ||||||
14549085-C-T | 12437286-C-T | ** | ||||||
14574011-G-A | 12462211-G-A | ** | ||||||
14582137-T-C | 12470337-T-C | ** | ||||||
14582140-T-A | 12470340-T-A | ** | ||||||
14582147-C-G | 12470347-C-G | ** | ||||||
14614680-C-G | 12502878-C-G | ** | ||||||
14622267-T-G | 12510465-T-G | ** | ||||||
14724587-A-G | 12612655-A-G | ** | ||||||
14757797-T-A | 12645866-T-A | ** | ||||||
14778917-A-G | 12666987-A-G | ** | ||||||
14785055-G-A | 12673125-G-A | ** | ||||||
14846989-G-A | 12735055-G-A | ** | ||||||
14953619-AT-A | 12841693-AT-A | ** | ||||||
15073121-G-T | 12961211-G-T | ** | ||||||
15073145-C-T | 12961235-C-T | ** | ||||||
15091749-T-C | 12979838-T-C | ** | ||||||
15093720-A-G | 12981808-A-G | ** | ||||||
15105168-C-A | 12993256-C-A | ** | ||||||
15205950-G-T | 13094036-G-T | ** | ||||||
15320516-T-G | 13208622-T-G | ** | ||||||
15382784-A-G | 13270904-A-G | ** | ||||||
15410872-C-A | 13298992-C-A | ** | ||||||
15427378-C-A | 13315498-C-A | ** | ||||||
15565891-C-A | 13454011-C-A | ** | ||||||
15584637-C-A | 13472757-C-A | ** | ||||||
15611881-A-T | 13500001-A-T | ** | ||||||
15611885-A-G | 13500005-A-G | ** | ||||||
15655001-C-AA | 13543121-C-AA | ** | ||||||
15682281-T-G | 13570401-T-G | ** | ||||||
15733572-G-T | 13621692-G-T | ** | ||||||
15744581-A-T | 13632701-A-T | ** | ||||||
15744641-A-G | 13632761-A-G | ** | ||||||
15756595-T-A | 13644715-T-A | ** | ||||||
15882694-A-C | 13770814-A-C | ** | ||||||
15997498-G-A | 13885618-G-A | ** | ||||||
16054302-T-A | 13942422-T-A | ** | ||||||
16071933-T-C | 13960053-T-C | ** | ||||||
16180258-TA-T | 14068378-TA-T | ** | ||||||
16196210-C-T | 14084330-C-T | ** | ||||||
16196218-C-A | 14084338-C-A | ** | ||||||
16520980-G-A | 14409100-G-A | ** | ||||||
16703344-C-T | 14591464-C-T | ** | ||||||
16703363-G-C | 14591483-G-C | ** | ||||||
16707843-A-T | 14595963-A-T | ** | ||||||
16746210-C-G | 14634330-C-G | ** | ||||||
16765026-T-C | 14653146-T-C | ** | ||||||
16889885-C-A | 14778005-C-A | ** | ||||||
17042746-C-A | 14930866-C-A | ** | ||||||
17085864-C-G | 14973984-C-G | ** | ||||||
17115177-A-C | 15003297-A-C | ** | ||||||
17118431-T-C | 15006551-T-C | ** | ||||||
17141877-C-T | 15029997-C-T | ** | ||||||
17153414-G-C | 15041534-G-C | ** | ||||||
17285197-T-C | 15173317-T-C | ** | ||||||
17407718-A-G | 15295838-A-G | ** | ||||||
17407742-A-G | 15295862-A-G | ** | ||||||
17407791-T-G | 15295911-T-G | ** | ||||||
17489689-T-G | 15377809-T-G | ** | ||||||
17500786-G-C | 15388906-G-C | ** | ||||||
17514012-G-C | 15402132-G-C | ** | ||||||
17514021-C-G | 15402141-C-G | ** | ||||||
17514128-A-C | 15402248-A-C | ** | ||||||
17572118-A-C | 15460238-A-C | ** | ||||||
17668387-T-A | 15556507-T-A | ** | ||||||
17683046-T-C | 15571166-T-C | ** | ||||||
17721027-C-A | 15609147-C-A | ** | ||||||
17859364-A-T | 15747484-A-T | ** | ||||||
17983698-G-T | 15871818-G-T | ** | ||||||
18060239-C-A | 15948359-C-A | ** | ||||||
18079221-C-T | 15967341-C-T | ** | ||||||
18106515-C-A | 15994635-C-A | ** | ||||||
18139905-A-T | 16028025-A-T | ** | ||||||
18154583-AT-A | 16042703-AT-A | ** | ||||||
18232068-G-T | 16120188-G-T | ** | ||||||
18237608-T-C | 16125728-T-C | FT98336 | ** | |||||
18366037-G-A | 16254157-G-A | P6_Prx | ** | |||||
18366040-A-C | 16254160-A-C | P6_Prx | ** | |||||
18430046-G-C | 16318166-G-C | P6_Dst | ** | |||||
18430060-C-T | 16318180-C-T | P6_Dst | ** | |||||
18430096-A-AG | 16318216-A-AG | P6_Dst | ** | |||||
18430112-A-AG | 16318232-A-AG | P6_Dst | ** | |||||
18636742-C-A | 16524862-C-A | ** | ||||||
18750033-A-G | 16638153-A-G | ** | ||||||
18793527-T-C | 16681647-T-C | ** | ||||||
18984081-A-G | 16872201-A-G | ** | ||||||
19123207-T-G | 17011327-T-G | ** | ||||||
19123247-C-T | 17011367-C-T | FT249763 | ** | |||||
19123248-T-G | 17011368-T-G | ** | ||||||
19129043-G-A | 17017163-G-A | ** | ||||||
19129049-C-A | 17017169-C-A | ** | ||||||
19129121-G-C | 17017241-G-C | ** | ||||||
19132510-A-C | 17020630-A-C | ** | ||||||
19172834-G-A | 17060954-G-A | ** | ||||||
19235164-A-C | 17123284-A-C | ** | ||||||
19246810-G-C | 17134930-G-C | ** | ||||||
19246952-T-A | 17135072-T-A | ** | ||||||
19248947-C-G | 17137067-C-G | ** | ||||||
19256263-C-A | 17144383-C-A | ** | ||||||
19267260-A-G | 17155380-A-G | ** | ||||||
19302808-G-T | 17190928-G-T | ** | ||||||
19354643-G-T | 17242763-G-T | ** | ||||||
19361159-C-A | 17249279-C-A | ** | ||||||
19398045-C-A | 17286165-C-A | ** | ||||||
19506847-T-C | 17394967-T-C | ** | ||||||
19668742-A-T | 17556862-A-T | P5_Prx | ** | |||||
19668783-A-AC | 17556903-A-AC | P5_Prx | ** | |||||
19690129-A-T | 17578249-A-T | P5_Prx | ** | |||||
19690134-A-C | 17578254-A-C | P5_Prx | ** | |||||
19690135-C-T | 17578255-C-T | P5_Prx | ** | |||||
19690156-T-C | 17578276-T-C | P5_Prx | 12×AAATA | ** | ||||
19690175-T-C | 17578295-T-C | P5_Prx | ** | |||||
19690215-T-A | 17578335-T-A | P5_Prx | ** | |||||
19831119-A-C | 17719239-A-C | P5_Prx | ** | |||||
19957287-T-C | 17845407-T-C | P5_Prx | ** | |||||
20101593-G-T | 17989713-G-T | P5_Dst | ** | |||||
20101609-C-T | 17989729-C-T | P5_Dst | ** | |||||
20249296-A-C | 18087410-A-C | P5_Dst | ** | |||||
20249326-G-C | 18087440-G-C | P5_Dst | ** | |||||
20600036-A-AC | 18438150-A-AC | P5_Dst | ** | |||||
20693249-C-G | 18531363-C-G | P4_Prx | ** | |||||
20693253-T-TA | 18531367-T-TA | P4_Prx | ** | |||||
21203869-G-A | 19041983-G-A | ** | ||||||
21281597-A-C | 19119711-A-C | ** | ||||||
21323626-A-G | 19161740-A-G | ** | ||||||
21325790-C-A | 19163904-C-A | ** | ||||||
21325812-A-G | 19163926-A-G | ** | ||||||
21325814-T-A | 19163928-T-A | ** | ||||||
21411714-GAGGCA-G | 19249828-GAGGCA-G | ** | ||||||
21695047-C-A | 19533161-C-A | ** | ||||||
21700532-T-A | 19538646-T-A | ** | ||||||
21902236-C-T | 19740350-C-T | ** | ||||||
21902246-G-A | 19740360-G-A | ** | ||||||
21902256-T-C | 19740370-T-C | ** | ||||||
21902264-C-A | 19740378-C-A | FTB72827 | ** | |||||
21926489-C-T | 19764603-C-T | ** | ||||||
21949525-C-A | 19787639-C-A | ** | ||||||
22001832-A-C | 19839946-A-C | ** | ||||||
22078402-A-G | 19916516-A-G | ** | ||||||
22189198-T-G | 20027312-T-G | ** | ||||||
22340020-G-C | 20178134-G-C | DYZ19 | ** | |||||
22488214-A-G | 20326328-A-G | DYZ19 | ** | |||||
22615463-T-G | 20453577-T-G | ** | ||||||
22615464-T-G | 20453578-T-G | ** | ||||||
22658281-AG-A | 20496395-AG-A | ** | ||||||
22703554-C-A | 20541668-C-A | ** | ||||||
23034343-T-G | 20872457-T-G | ** | ||||||
23034348-T-A | 20872462-T-A | ** | ||||||
23121304-T-G | 20959418-T-G | ** | ||||||
23142116-A-C | 20980230-A-C | ** | ||||||
23267087-A-T | 21105201-A-T | ** | ||||||
23321805-T-C | 21159919-T-C | ** | ||||||
23509046-C-A | 21347160-C-A | ** | ||||||
23512326-T-C | 21350440-T-C | ** | ||||||
23544955-C-A | 21383069-C-A | ** | ||||||
23642856-A-G | 21480970-A-G | ** | ||||||
23808605-T-C | 21646719-T-C | ** | ||||||
23821942-A-G | 21660056-A-G | ** | ||||||
23887150-A-C | 21725264-A-C | ** | ||||||
23887159-A-G | 21725273-A-G | ** | ||||||
21753534-T-G | ** | |||||||
21753537-T-A | ** | |||||||
21753542-T-A | ** | |||||||
21753612-A-T | ** | |||||||
24001215-C-A | 21855068-C-A | ** | ||||||
24070115-T-C | 21923968-T-C | P3_b1 | ** | |||||
24290900-G-T | 22144753-G-T | P3_t1 | ** | |||||
24371817-T-G | 22225670-T-G | ** | ||||||
24403251-T-G | 22257104-T-G | ** | ||||||
24424184-A-T | 22278037-A-T | ** | ||||||
24424209-A-C | 22278062-A-C | ** | ||||||
24872697-G-T | 22726550-G-T | IR1_R | 11×T | ** | ||||
24883360-C-A | 22737213-C-A | g1 | ** | |||||
25884053-T-A | 23737906-T-A | BY226449 | P1_Y1 | ** | ||||
25909708-G-C | 23763561-G-C | P1_Y1 | ** | |||||
25909766-A-AG | 23763619-A-AG | P1_Y1 | ** | |||||
26358764-G-A | 24212617-G-A | P1_Y1 | ** | |||||
27127538-C-G | 24981391-C-G | P1_g3 | ** | |||||
27266438-A-G | 25120291-A-G | P1_g3 | ** | |||||
27759091-A-G | 25612944-A-G | P1_Y2 | ** | |||||
27759113-A-T | 25612966-A-T | P1_Y2 | ** | |||||
27759136-T-C | 25612989-T-C | P1_Y2 | ** | |||||
27807972-T-G | 25661825-T-G | P1_Y2 | ** | |||||
27807986-G-C | 25661839-G-C | P1_Y2 | ** | |||||
27808012-C-T | 25661865-C-T | P1_Y2 | ** | |||||
27861907-A-T | 25715760-A-T | P1_Y2 | ** | |||||
27903069-C-G | 25756922-C-G | P1_Y2 | ** | |||||
27903103-T-G | 25756956-T-G | P1_Y2 | ** | |||||
27903127-A-G | 25756980-A-G | P1_Y2 | ** | |||||
28078213-T-C | 25932066-T-C | P1_Y2 | ** | |||||
28078239-A-C | 25932092-A-C | P1_Y2 | ** | |||||
28078252-T-C | 25932105-T-C | P1_Y2 | ** | |||||
28078253-A-G | 25932106-A-G | P1_Y2 | ** | |||||
28078315-T-TTA | 25932168-T-TTA | P1_Y2 | ** | |||||
28485833-T-C | 26339686-T-C | ** | ||||||
28500350-A-C | 26354203-A-C | ** | ||||||
28505593-T-A | 26359446-T-A | ** | ||||||
28558183-C-G | 26412036-C-G | ** | ||||||
28560728-T-G | 26414581-T-G | ** | ||||||
28560760-A-T | 26414613-A-T | ** | ||||||
28597123-A-G | 26450976-A-G | ** | ||||||
28635200-T-A | 26489053-T-A | ** | ||||||
28779077-C-A | 26632930-C-A | ** | ||||||
28783685-A-G | 26637538-A-G | ** | ||||||
28818929-A-G | 26672782-A-G | ** | ||||||
56826364-A-T | ** | |||||||
56860096-A-G | ** | |||||||
56860123-T-AA | ** | |||||||
56860139-G-T | ** | |||||||
15116-G-A | ** | |||||||
13856308-G-A | 11735602-G-A | *** | ||||||
7075264-T-G | 7207223-T-G | *** | ||||||
13976076-T-A | 11855370-T-A | *** | ||||||
13449755-A-G | 11294079-A-G | *** | ||||||
18596093-CAT-C | 16484213-CAT-C | *** | ||||||
7160170-CTT-C | 7292129-CTT-C | 14×T | *** | |||||
22446583-C-A | 20284697-C-A | BY43869 | DYZ19 | *** | ||||
9771940-C-T | 9934331-C-T | 18×T | *** | |||||
58975048-A-ATCTAT | 56828901-A-ATCTAT | 4×TCCAT | *** | |||||
10934789-G-T | *** | |||||||
11001470-G-A | *** | |||||||
9771906-G-T | 9934297-G-T | *** | ||||||
11001437-T-C,TGTTCA | *** | |||||||
14391874-TAAAAA-T | 12271170-TAAAAA-T | 15×A | *** | |||||
10934780-C-G | *** | |||||||
23827759-C-A | 21665873-C-A | *** | ||||||
18534177-C-A | 16422297-C-A | P6_Dst | *** | |||||
16485800-C-CA | 14373920-C-CA | 10×A | *** | |||||
23775428-CTT-C,CT | 21613542-CTT-C,CT | 14×T | *** | |||||
13593862-C-A | 11438186-C-A | *** | ||||||
14898432-C-T | 12786498-C-T | *** | ||||||
15842557-CTT-C,CT | 13730677-CTT-C,CT | 13×T | *** | |||||
8321481-A-T | 8453440-A-T | *** | ||||||
21663248-G-A | 19501362-G-A | *** | ||||||
14867079-A-T | 12755149-A-T | *** | ||||||
10934778-C-A | *** | |||||||
8773858-CAAAA-C,CAAA | 8905817-CAAAA-C,CAAA | 16×A | *** | |||||
13689954-T-C | 11534278-T-C | BY211001 | *** | |||||
13320149-C-A | 11164473-C-A | *** | ||||||
23597636-C-A | 21435750-C-A | *** | ||||||
23475273-G-T | 21313387-G-T | *** | ||||||
17321316-A-G | 15209436-A-G | *** | ||||||
22896274-T-G | 20734388-T-G | *** | ||||||
56834839-C-A | *** | |||||||
18403470-C-A | 16291590-C-A | P6_Gap | *** | |||||
56834840-C-A | *** | |||||||
23482910-G-A | 21321024-G-A | FTA6286 | *** | |||||
14394468-TAAAAA-T | 12273764-TAAAAA-T | 16×A | *** | |||||
4271085-G-T | 4403044-G-T | *** | ||||||
6576970-T-C | 6708929-T-C | *** | ||||||
7157899-C-A | 7289858-C-A | *** | ||||||
7289350-C-A | 7421309-C-A | *** | ||||||
8094614-C-A | 8226573-C-A | *** | ||||||
8379089-C-A | 8511048-C-A | *** | ||||||
8705698-CTTT-C,CT | 8837657-CTTT-C,CT | 16×T | *** | |||||
8810868-C-A | 8942827-C-A | *** | ||||||
9461608-C-A | 9623999-C-A | *** | ||||||
9771900-C-T | 9934291-C-T | *** | ||||||
10934774-C-G,T | *** | |||||||
10980727-T-C | *** | |||||||
13460142-C-T | 11304466-C-T | *** | ||||||
13460162-T-A | 11304486-T-A | *** | ||||||
13460173-G-T | 11304497-G-T | *** | ||||||
14742096-T-A | 12630164-T-A | *** | ||||||
14771649-CTTTTT-C,CT | 12659718-CTTTTT-C,CT | 17×T | *** | |||||
15156546-A-G | 13044633-A-G | *** | ||||||
15174520-A-G | 13062606-A-G | *** | ||||||
16548380-C-A | 14436500-C-A | *** | ||||||
17141699-G-A | 15029819-G-A | *** | ||||||
17321313-A-G | 15209433-A-G | *** | ||||||
17596395-TAAA-T,TA | 15484515-TAAA-T,TA | 15×A | *** | |||||
21923381-G-A | 19761495-G-A | *** | ||||||
21926419-G-T | 19764533-G-T | *** | ||||||
21996239-G-T | 19834353-G-T | *** | ||||||
22023219-TTTG-G,T | 19861333-TTTG-G,T | *** | ||||||
22258098-C-A | 20096212-C-A | DYZ19 | *** | |||||
22765464-T-A | 20603578-T-A | *** | ||||||
22834104-C-A | 20672218-C-A | *** | ||||||
23523530-G-A | 21361644-G-A | *** | ||||||
23746302-C-A | 21584416-C-A | *** | ||||||
24278260-AAG-A,AG | 22132113-AAG-A,AG | P3_b1 | *** | |||||
56829749-T-C,TGCATTCCGTT | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.