Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > ZZ45 > Z36/S206 > Y17161 > Y16889 > A7992 > ~19972403-C-T > BY32418

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B64518
22306327-G-T 20144441-G-T BY15407 DYZ19 A*
20045558-G-A 17933678-G-A P5_Prx A*
20649453-G-C 18487567-G-C P4_Prx A*
22309662-G-T 20147776-G-T DYZ19 A*
28817441-A-G 26671294-A-G A*
26422881-G-A 24276734-G-A P1_Y1 A*
23720657-T-C 21558771-T-C A*
25956275-G-A 23810128-G-A P1_Y1 A*
22430769-G-T 20268883-G-T DYZ19 A*
25536940-A-G 23390793-A-G P1_gr1 A*
22473904-A-C 20312018-A-C BY223017 DYZ19 +
21668016-GAC-G 19506130-GAC-G +
22479806-T-A 20317920-T-A BY224308 DYZ19 +
22483418-A-T 20321532-A-T BY224483 DYZ19 +
15825137-C-T 13713257-C-T BY157875 YY+
23236547-A-G 21074661-A-G BY158550 Y+
22523540-G-A 20361654-G-A BY158479 Y+
13588125-G-T 11432449-G-T +
7185871-C-CT 7317830-C-CT +
18916416-A-C 16804536-A-C BY158201 YY+
6857078-G-A 6989037-G-A BY157354 YY+
21708146-T-G 19546260-T-G BY158380 YY+
13682220-A-T 11526544-A-T +
17117676-C-A 15005796-C-A BY157999 YY+
21493313-T-C 19331427-T-C BY158351 YY+
21361667-C-T 19199781-C-T YY+
19395740-G-A 17283860-G-A BY158270 YY+
14821920-T-C 12709987-T-C BY157786 YY+
23241141-C-T 21079255-C-T BY158551 Y+
7302568-G-A 7434527-G-A BY157411 YY+
23466628-C-G 21304742-C-G BY158571 YY+
17800582-C-T 15688702-C-T BY158080 YY+
17572649-T-G 15460769-T-G BY158050 YY+
17437306-AG-A 15325426-AG-A +
16217695-A-C 14105815-A-C BY157900 YY+
17436531-C-G 15324651-C-G BY158033 YY+
17471692-G-C 15359812-G-C BY158039 YY+
20215917-T-TGC 18054031-T-TGC P5_Dst +
16906446-T-C 14794566-T-C BY157978 YY+
8614242-C-T 8746201-C-T BY16430Z1834 YY+
18082835-TA-T 15970955-TA-T +
22279634-A-G 20117748-A-G DYZ19 *
22279327-A-G 20117441-A-G DYZ19 *
22255841-G-A 20093955-G-A DYZ19 *
22335064-G-T 20173178-G-T PF5721BY217514 DYZ19 *
22345119-A-G 20183233-A-G DYZ19 *
15279349-AT-A 13167448-AT-A **
14956083-T-G 12844158-T-G **
16941554-A-C 14829674-A-C **
15281644-C-A 13169743-C-A **
15391347-C-A 13279467-C-A **
16941537-C-T 14829657-C-T **
14720231-G-T 12608299-G-T **
14570777-TTG-T 12458977-TTG-T **
15620016-G-A 13508136-G-A **
16431073-T-TAC 14319193-T-TAC **
15648740-A-C 13536860-A-C **
16876890-C-A 14765010-C-A **
16848530-G-T 14736650-G-T **
15730510-A-T 13618630-A-T **
16431070-AAT-A 14319190-AAT-A **
16431058-C-T 14319178-C-T **
16431045-A-G 14319165-A-G **
16421967-G-A 14310087-G-A **
16417513-C-A 14305633-C-A **
16292579-T-TG 14180699-T-TG **
14508175-G-T 12396380-G-T **
15922753-G-T 13810873-G-T **
15932205-G-T 13820325-G-T **
16259159-C-A 14147279-C-A **
14530959-A-G 12419160-A-G **
56859083-C-T **
14431169-C-A 12310442-C-A **
10913985-T-C **
10977096-T-TCCACC **
10975848-T-A **
10970669-C-A **
10959150-C-A **
10922382-T-C **
10914016-G-A **
10914002-C-T **
10913982-C-T **
11027303-C-A **
10913592-C-T **
10885909-C-A **
10849518-C-A **
10846990-C-T **
10836925-G-T **
10824687-C-A **
10817998-T-A **
11016141-C-A **
13196472-T-C 11040796-T-C **
14379336-T-C 12258632-T-C **
13894167-A-G 11773461-A-G **
14296876-T-G 12176170-T-G **
14228691-T-C 12107985-T-C **
14142157-G-T 12021451-G-T **
14088412-C-A 11967706-C-A **
13988854-G-A 11868148-G-A **
13953380-G-T 11832674-G-T **
13936503-C-A 11815797-C-A **
13855358-A-G 11734652-A-G **
13240507-C-A 11084831-C-A **
11676976-C-A **
11646399-A-T **
13521066-G-T 11365390-G-T **
13324936-G-T 11169260-G-T **
13322457-G-A 11166781-G-A **
13263116-G-T 11107440-G-T **
13259105-T-A 11103429-T-A **
17001105-C-A 14889225-C-A **
18173292-C-A 16061412-C-A **
17181609-C-A 15069729-C-A FT46444 **
22201127-G-T 20039241-G-T **
23832945-G-T 21671059-G-T **
23034453-G-C 20872567-G-C **
22804789-T-C 20642903-T-C **
22639402-G-T 20477516-G-T **
22619953-C-A 20458067-C-A **
22215329-C-T 20053443-C-T **
22199566-T-G 20037680-T-G **
24021670-C-A 21875523-C-A **
22085057-G-T 19923171-G-T **
21990439-T-C 19828553-T-C **
21698240-T-A 19536354-T-A **
21523656-T-C 19361770-T-C **
21496458-G-T 19334572-G-T **
21267992-C-T 19106106-C-T **
21076965-C-A 18915079-C-A **
23951800-C-A 21805653-C-A **
24079308-C-A 21933161-C-A P3_b1 **
20974872-G-T 18812986-G-T P4_Dst 11×CAA**
28551522-C-A 26405375-C-A **
56849866-A-T **
28812290-T-A 26666143-T-A **
28797014-A-T 26650867-A-T **
28725986-C-A 26579839-C-A **
28676783-A-T 26530636-A-T **
28627747-C-A 26481600-C-A **
28453896-A-AAT 26307749-A-AAT P1_gr2 **
24170330-T-A 22024183-T-A P3_b1 **
27963542-GAATT-G 25817395-GAATT-G P1_Y2 **
27607920-G-T 25461773-G-T P1_Y2 **
26139251-A-T 23993104-A-T P1_Y1 **
25874828-C-A 23728681-C-A P1_Y1 **
25590321-A-T 23444174-A-T P1_gr1 **
25590304-A-T 23444157-A-T P1_gr1 **
25590281-A-T 23444134-A-T P1_gr1 **
21030992-GTT-G 18869106-GTT-G P4_Dst **
20812513-C-A 18650627-C-A P4_Gap **
17221237-G-T 15109357-G-T **
17778582-G-T 15666702-G-T **
18337342-C-A 16225462-C-A P6_Prx **
18255919-G-T 16144039-G-T **
18188036-G-C 16076156-G-C **
18174933-GTCCCA-G 16063053-GTCCCA-G **
10816427-C-T **
17930593-G-T 15818713-G-T **
17707349-C-A 15595469-C-A **
18758847-C-G 16646967-C-G **
17664845-T-G 15552965-T-G **
17664842-T-G 15552962-T-G **
17657485-C-A 15545605-C-A **
17540523-G-T 15428643-G-T **
17498999-C-T 15387119-C-T **
17323512-A-G 15211632-A-G **
17283579-G-T 15171699-G-T **
18748722-C-A 16636842-C-A **
18761911-C-A 16650031-C-A **
20669310-T-C 18507424-T-C P4_Prx **
20638698-T-A 18476812-T-A P4_Prx **
20638749-T-A 18476863-T-A P4_Prx **
20638744-T-A 18476858-T-A P4_Prx **
20638742-T-A 18476856-T-A P4_Prx **
20638736-T-A 18476850-T-A P4_Prx **
20638731-T-A 18476845-T-A P4_Prx **
20638714-T-A 18476828-T-A P4_Prx **
20434783-A-T 18272897-A-T P5_Dst **
19162144-C-CT 17050264-C-CT **
20073839-A-T 17961959-A-T P5_Dst **
19621881-T-A 17510001-T-A P5_Prx **
19621870-T-A 17509990-T-A P5_Prx **
19621863-T-A 17509983-T-A P5_Prx **
19621844-T-A 17509964-T-A P5_Prx **
19464859-G-T 17352979-G-T **
19253013-T-C 17141133-T-C **
3267702-GCA-G 3399661-GCA-G **
10817863-A-C **
10777971-C-T **
7821016-C-A 7952975-C-A **
19547557-T-C 17435677-T-C **
13624288-C-A 11468612-C-A **
14608226-T-A 12496428-T-A **
20215925-T-C 18054039-T-C BY209055 P5_Dst **
17864211-C-A 15752331-C-A **
14181435-C-T 12060729-C-T **
4302133-C-A 4434092-C-A **
4241455-C-A 4373414-C-A **
14448032-C-A 12327305-C-A **
23145411-C-A 20983525-C-A **
4479893-C-A 4611852-C-A **
23825635-G-T 21663749-G-T **
10842922-T-C **
10759912-T-C **
10759888-C-T **
56844761-G-T **
16431063-T-C 14319183-T-C **
18390056-A-G 16278176-A-G P6_Gap **
4757229-C-A 4889188-C-A **
16843065-C-A 14731185-C-A **
10792321-C-A **
9996512-C-A 10158903-C-A **
9618163-G-T 9780554-G-T IR3_Prx **
17323515-AGG-A 15211635-AGG-A **
10955518-T-TCCCA **
12288301-CTTTTTT-C 19×T**
56840774-C-A **
10943713-C-A **
10759881-A-T **
10657735-T-C **
10774325-C-T **
14810861-GT-G 12698932-GT-G 9×T**
16562921-C-A 14451041-C-A **
16431043-G-A 14319163-G-A **
22171741-G-T 20009855-G-T **
10861969-C-A **
10759890-C-T **
6816546-G-GAAA 6948505-G-GAAA 22×A**
10880294-T-G **
22022831-C-A 19860945-C-A **
9944059-G-T 10106450-G-T **
10955521-T-TC **
20669306-C-T 18507420-C-T P4_Prx **
18819720-C-A 16707840-C-A **
18631820-C-A 16519940-C-A **
10989102-C-G **
23434291-C-A 21272405-C-A **
10749301-C-A **
14614593-C-A 12502791-C-A **
6368360-C-A 6500319-C-A **
22629838-C-A 20467952-C-A **
10912540-C-A **
16275571-C-A 14163691-C-A **
10917760-C-A **
7156852-C-A 7288811-C-A **
14042713-G-T 11922007-G-T **
18309175-T-C 16197295-T-C P6_Prx **
24415807-C-A 22269660-C-A **
15860291-C-A 13748411-C-A **
10989115-T-G **
14412906-C-A 12292203-C-A **
13329649-G-T 11173973-G-T **
28521625-C-A 26375478-C-A **
19183809-C-A 17071929-C-A **
8728218-C-A 8860177-C-A **
18565233-C-A 16453353-C-A **
9062215-C-A 9224606-C-A **
2790451-C-A 2922410-C-A **
11034809-C-A **
2771056-C-A 2903015-C-A **
3501154-C-A 3633113-C-A **
21082034-C-A 18920148-C-A **
21547414-C-A 19385528-C-A **
15137900-C-A 13025987-C-A **
15527644-C-A 13415764-C-A **
5842574-C-A 5974533-C-A **
21939743-C-A 19777857-C-A **
56849877-C-A **
10770425-G-A **
10973142-C-A **
10999633-T-TTATTC **
6602662-C-A 6734621-C-A **
7974215-G-A 8106174-G-A **
7866181-T-G 7998140-T-G **
7211216-C-A 7343175-C-A **
7166097-C-A 7298056-C-A **
7086643-C-A 7218602-C-A **
6903646-T-G 7035605-T-G **
6752201-C-G 6884160-C-G **
6601394-C-A 6733353-C-A **
7991420-G-T 8123379-G-T **
6535038-C-A 6666997-C-A **
6534804-C-A 6666763-C-A **
6050927-G-T 6182886-G-T **
6049147-G-T 6181106-G-T **
6009736-C-A 6141695-C-A **
5785703-A-C 5917662-A-C **
5658790-G-T 5790749-G-T **
5617159-C-A 5749118-C-A **
18634647-C-A 16522767-C-A **
7996256-G-C 8128215-G-C **
17372380-G-T 15260500-G-T **
10651500-C-A **
14717552-G-A 12605620-G-A CTS3196 M5143 PF1648 **
10762463-C-A **
10746813-C-A **
10687694-C-A **
4864250-CGTGT-C 4996209-CGTGT-C 16×GT**
10657734-C-T **
10657454-T-C **
9672335-G-A 9834726-G-A BY176681 IR3_Prx **
6535381-C-A 6667340-C-A **
9440238-A-G 9602629-A-G **
9047952-T-C 9210343-T-C **
9056768-G-T **
8786770-C-A 8918729-C-A **
8283762-C-A 8415721-C-A **
8172938-G-T 8304897-G-T **
8171211-C-A 8303170-C-A **
8080193-C-A 8212152-C-A **
5534136-T-C 5666095-T-C **
22875370-C-A 20713484-C-A **
56847080-C-A **
2899775-G-T 3031734-G-T **
3452366-G-T 3584325-G-T **
3443742-C-A 3575701-C-A **
3367049-G-A 3499008-G-A **
3326664-C-A 3458623-C-A **
3195426-G-T 3327385-G-T **
3116366-C-A 3248325-C-A **
2899884-A-G 3031843-A-G **
2858758-C-A 2990717-C-A **
5359658-C-T 5491617-C-T **
6037838-C-A 6169797-C-A **
15656740-C-A 13544860-C-A **
22791106-C-A 20629220-C-A **
3279793-C-A 3411752-C-A **
13236350-T-C 11080674-T-C **
7030545-C-A 7162504-C-A **
16101306-A-T 13989426-A-T P8_Prx **
3528601-C-A 3660560-C-A **
8102520-C-A 8234479-C-A **
3595159-G-GA 3727118-G-GA 10×A**
10839026-A-C **
5200305-C-T 5332264-C-T **
5191363-C-T 5323322-C-T **
6765787-C-A 6897746-C-A **
4798364-C-A 4930323-C-A **
4764917-G-T 4896876-G-T **
4254370-G-T 4386329-G-T **
4120490-G-T 4252449-G-T **
3996180-C-A 4128139-C-A **
3931313-G-T 4063272-G-T **
3860425-C-A 3992384-C-A **
3826533-C-A 3958492-C-A **
3817355-G-T 3949314-G-T **
3800075-C-T 3932034-C-T 8×CA**
3788267-G-T 3920226-G-T **
3767941-G-T 3899900-G-T **
3722705-C-A 3854664-C-A **
10925481-C-A **
10786180-G-T ***
10989153-A-C ***
23803751-G-T 21641865-G-T ***
10999675-T-A ***
17950751-A-G 15838871-A-G ***
2813872-C-A 2945831-C-A ***
2747804-C-A 2879763-C-A ***
10762683-C-A ***
10679282-CA-C ***
8045589-T-C 8177548-T-C ***
7977228-G-GAA 8109187-G-GAA 10×A***
5393271-G-T 5525230-G-T ***
14405878-G-T 12285175-G-T ***
14557815-A-C 12446016-A-C ***
15219023-C-T 13107109-C-T ***
3546577-C-A 3678536-C-A ***
2790385-C-A 2922344-C-A ***
3728804-G-T 3860763-G-T ***
17323502-A-G 15211622-A-G ***
17504875-C-A 15392995-C-A ***
17950750-A-G 15838870-A-G ***
19071164-C-A 16959284-C-A ***
19299072-C-A 17187192-C-A ***
21569958-TAAAAAAAAAAAAAAAAAAAAA-T 19408072-TAAAAAAAAAAAAAAAAAAAAA-T 46×A***
16761388-C-A 14649508-C-A ***
16354385-C-A 14242505-C-A ***
22011827-T-C 19849941-T-C ***
22047780-C-A 19885894-C-A ***
22141103-C-A 19979217-C-A ***
10024175-G-C 10186566-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B64518946755677238307620804
Used in age calculations946755677238307620804
Counts of SNPs2118
Variant counts last updated 2019-10-28 02:47:13.



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