Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC20747 > FGC20764 > ZZ57 > Y31381

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
IN20755
6341568-C-T 6473527-C-T A*
26003226-C-T 23857079-C-T P1_Y1 A*
6214999-C-T 6346958-C-T IR3_Dst A*
23180029-A-C 21018143-A-C YA*
22307751-C-A 20145865-C-A DYZ19 A*
22284116-C-G 20122230-C-G A4035 DYZ19 A*
19635825-G-T 17523945-G-T P5_Prx A*
19912736-G-A 17800856-G-A P5_Prx A*
14603460-T-C 12491662-T-C BY153686 YY+
15530688-T-A 13418808-T-A BY153894 YY+
14780504-C-T 12668574-C-T BY153719 YY+
14707401-G-A 12595467-G-A BY153703 YY+
8526817-G-T 8658776-G-T BY152950 YY+
13806177-G-A 11685471-G-A BY153437 +
13706445-A-C 11550769-A-C BY153412 +
17444288-AG-A 15332408-AG-A +
8483047-G-A 8615006-G-A BY152937 YY+
8336197-A-G 8468156-A-G BY152884 YY+
7507158-G-A 7639117-G-A BY152615 +
7308579-C-T 7440538-C-T BY152579 YY+
7168642-C-T 7300601-C-T BY152543 YY+
16494774-G-A 14382894-G-A BY154133 YY+
13853038-G-A 11732332-G-A BY91479 +
18087833-T-G 15975953-T-G BY154567 YY+
18098676-G-A 15986796-G-A BY154569 YY+
18582507-T-C 16470627-T-C BY154664 YY+
19224899-C-T 17113019-C-T BY154838 YY+
21143798-T-C 18981912-T-C BY154954 YY+
21253531-T-A 19091645-T-A YY+
21504461-C-T 19342575-C-T BY155050 YY+
21610527-C-T 19448641-C-T YY+
21878326-G-T 19716440-G-T BY155154 YY+
22146954-A-G 19985068-A-G BY155209 YY+
22225946-A-C 20064060-A-C BY213124 DYZ19 +
22459490-G-T 20297604-G-T DYZ19 +
23247877-T-G 21085991-T-G BY155555 YY+
23817576-A-T 21655690-A-T BY155700 Y+
24416395-A-G 22270248-A-G BY157198 Y+
18765846-A-G 16653966-A-G BY154703 YY+
11791-G-T +
13489927-T-C 11334251-T-C *
22316680-C-T 20154794-C-T DYZ19 *
10669548-C-A **
16246077-T-C 14134197-T-C **
15235521-G-A 13123607-G-A **
15317511-A-T 13205617-A-T **
15323647-A-T 13211765-A-T **
15352899-A-C 13241018-A-C **
15422928-A-T 13311048-A-T **
15430446-C-A 13318566-C-A **
15769513-C-A 13657633-C-A **
15987148-G-A 13875268-G-A **
16085424-C-T 13973544-C-T **
16567994-C-A 14456114-C-A **
21770000-C-A 19608114-C-A **
15202586-A-G 13090672-A-G **
17020492-C-A 14908612-C-A **
17183327-A-G 15071447-A-G **
17462108-C-A 15350228-C-A **
17492448-AATTTTAGCATGT-A 15380568-AATTTTAGCATGT-A **
17514139-G-A 15402259-G-A FT23568 **
17545467-C-A 15433587-C-A **
17561792-C-A 15449912-C-A **
17826365-A-T 15714485-A-T **
17876282-T-C 15764402-T-C **
13811020-A-C 11690314-A-C **
15235506-G-A 13123592-G-A **
15202572-CAG-C 13090658-CAG-C **
15202583-T-C 13090669-T-C **
14229919-C-A 12109213-C-A FGC70239 **
10990056-C-T **
10990548-C-T **
11032752-T-C **
27540975-C-A 25394828-C-A P1_Y2 **
11657680-A-G **
13811023-G-C 11690317-G-C **
13982871-A-T 11862165-A-T **
14006588-C-A 11885882-C-A **
14122917-T-A 12002211-T-A **
15376031-C-A 13264151-C-A **
14297976-T-C 12177270-T-C **
18297369-C-A 16185489-C-A P6_Prx **
14297984-C-T 12177278-C-T **
14298007-T-C 12177301-T-C **
14330803-C-A 12210097-C-A **
14405024-G-A 12284321-G-A **
14423821-A-G 12303096-A-G **
22177602-C-A 20015716-C-A **
10975917-T-A **
14720455-C-G 12608523-C-G **
14808511-C-A 12696582-C-A **
14827337-C-T 12715404-C-T **
18271057-C-A 16159177-C-A **
18629380-C-A 16517500-C-A **
10987263-C-T **
23274116-A-T 21112230-A-T **
22079444-G-C 19917558-G-C **
18857588-T-TG 16745708-T-TG 6×TTG**
22211360-C-T 20049474-C-T **
22215338-C-A 20053452-C-A **
22305356-A-T 20143470-A-T DYZ19 **
22441714-C-A 20279828-C-A DYZ19 **
8045358-T-C 8177317-T-C PF2113 **
22538214-A-T 20376328-A-T **
22611388-C-A 20449502-C-A **
23177632-G-T 21015746-G-T **
23350572-A-C 21188686-A-C **
21969728-C-A 19807842-C-A **
23609195-G-C 21447309-G-C **
23840531-C-A 21678645-C-A **
16183985-A-T 14072105-A-T YSC0001282 PF4725 CTS5285 **
25885878-A-AGGAC 23739731-A-AGGAC P1_Y1 **
6631743-C-A 6763702-C-A PF1502 M5382 **
26057922-A-C 23911775-A-C P1_Y1 **
27791942-C-G 25645795-C-G P1_Y2 **
28534287-C-A 26388140-C-A **
28554634-A-C 26408487-A-C **
28601527-C-A 26455380-C-A **
22010366-C-T 19848480-C-T **
16405574-C-A 14293694-C-A **
18764310-G-A 16652430-G-A **
19390059-A-G 17278179-A-G **
6922406-C-A 7054365-C-A **
18892089-T-G 16780209-T-G **
18905536-A-T 16793656-A-T **
18968312-T-C 16856432-T-C **
19125353-C-A 17013473-C-A **
19161107-G-T 17049227-G-T **
19218189-G-A 17106309-G-A **
19223361-G-T 17111481-G-T **
11035990-A-C **
19340587-A-T 17228707-A-T **
19544481-T-C 17432601-T-C **
6091118-C-A 6223077-C-A **
19544486-T-C 17432606-T-C **
19544491-T-A 17432611-T-A **
11022850-A-AATT **
20629086-C-T 18467200-C-T P4_Prx **
20799261-C-A 18637375-C-A P4_Prx **
20799267-T-A 18637381-T-A P4_Prx **
21090884-C-A 18928998-C-A **
11022846-T-A **
16830970-C-A 14719090-C-A **
21371622-A-AT 19209736-A-AT 8×T**
21490979-A-T 19329093-A-T **
10988835-C-G **
14180888-A-G 12060182-A-G **
10975541-C-A **
14201894-C-A 12081188-C-A **
7206853-C-CT 7338812-C-CT 8×T**
8095577-C-A 8227536-C-A **
10764539-C-G **
10964999-C-A **
10788049-C-A **
7470728-T-TA 7602687-T-TA IR1_L **
11673316-C-A **
20055888-A-ATG 17944008-A-ATG P5_Prx **
13847206-CTCAAA-C 11726500-CTCAAA-C **
8214228-G-T 8346187-G-T **
18872184-C-T 16760304-C-T **
14366595-C-A 12245890-C-A **
3158998-C-A 3290957-C-A **
3491582-T-C 3623541-T-C **
3790806-G-A 3922765-G-A **
10935196-T-C **
4116294-C-CAA 4248253-C-CAA 10×A**
4184560-G-T 4316519-G-T **
4929839-C-A 5061798-C-A **
4936639-C-A 5068598-C-A **
5019274-C-A 5151233-C-A **
5097380-G-T 5229339-G-T **
15655002-C-A 13543122-C-A **
10973425-C-A **
5869464-C-A 6001423-C-A **
10887367-C-G **
15823572-C-A 13711692-C-A **
14298016-C-T 12177310-C-T **
5249723-C-A 5381682-C-A **
21023249-G-GTTT 18861363-G-GTTT P4_Dst 14×T**
15786157-C-A 13674277-C-A **
10887344-A-G **
14916855-C-A 12804922-C-A **
21104439-A-T 18942553-A-T **
17749388-C-A 15637508-C-A **
10764540-ATGCCAT-A **
27540971-A-C 25394824-A-C P1_Y2 **
5125812-T-A 5257771-T-A **
7722949-C-A 7854908-C-A **
28478405-C-A 26332258-C-A **
13811044-C-T 11690338-C-T **
10940890-C-A **
21911319-C-A 19749433-C-A **
10926685-T-A **
18006587-C-A 15894707-C-A P7_Gap **
16914224-C-A 14802344-C-A **
17923591-C-A 15811711-C-A **
19127730-C-A 17015850-C-A **
13460156-C-A 11304480-C-A **
5447114-A-C 5579073-A-C **
10868923-C-A **
6024584-G-A 6156543-G-A **
6091165-G-A 6223124-G-A **
10809587-T-TA **
3343135-C-A 3475094-C-A **
56841258-C-A **
8735101-C-T 8867060-C-T **
10809582-TC-T **
10809565-A-G **
8761901-A-C 8893860-A-C **
10809563-C-T **
10784026-C-A **
14819674-CTTTTT-C 12707741-CTTTTT-C 15×T**
10764567-T-TTCGAC **
10655084-C-A **
8977018-T-A 9139409-T-A **
8992886-AT-A 9155277-AT-A **
9034427-G-T 9196818-G-T **
9231754-A-G 9394145-A-G **
9425343-A-G 9587734-A-G **
9773469-A-T 9935860-A-T **
10820818-A-ACACAC **
7768715-C-G 7900674-C-G **
10975911-T-C **
7094305-G-T 7226264-G-T **
6120326-C-T 6252285-C-T **
10934428-C-A **
6213760-C-A 6345719-C-A IR3_Dst **
10889050-G-T **
10887356-T-TCAATA **
10669536-T-G **
10975948-A-C **
10887327-C-A **
6773723-C-T 6905682-C-T **
6831311-A-C 6963270-A-C **
7299717-T-C 7431676-T-C **
10051322-T-C 10213713-T-C **
7115206-C-A 7247165-C-A **
10975912-C-A **
10850630-C-T ***
24485675-C-CTTTTT 22339528-C-CTTTTT 15×T***
23190186-G-T 21028300-G-T ***
22516363-C-T 20354477-C-T A7887 ***
10671031-C-CG ***
16482392-C-A 14370512-C-A Y12920 BY1263 ***
10671021-C-CAATGG ***
10671016-C-CAGATG ***
22299491-A-G 20137605-A-G DYZ19 ***
17996247-A-G 15884367-A-G PF4572 P7_Gap ***
6401081-C-A 6533040-C-A ***
28768531-C-A 26622384-C-A ***
6580217-C-A 6712176-C-A ***
23471038-CAAAAAA-C 21309152-CAAAAAA-C 19×A***
8842943-TA-T,TAA 8974902-TA-T,TAA 22×A***
13488503-C-T 11332827-C-T ***
3436171-C-CTT 3568130-C-CTT 15×T***
17598221-C-A 15486341-C-A ***
17736689-A-G 15624809-A-G ***
10926650-T-C ***
17170001-T-C 15058121-T-C ***
16253843-AAT-A 14141963-AAT-A ***
14453709-GA-G,GAA 12332982-GA-G,GAA 18×A***
18756798-GTT-G,GTTT 16644918-GTT-G,GTTT 19×T***
21365436-AAAAG-A 19203550-AAAAG-A ***
18913602-C-A 16801722-C-A ***
56830128-C-CACT ***
10850619-G-T ***
8061060-G-A 8193019-G-A ***
14768099-AG-A,AAG 12656168-AG-A,AAG ***
8104717-C-A 8236676-C-A ***
10789338-T-G ***
15372552-C-A 13260672-C-A ***
13460975-A-G 11305299-A-G ***
21563815-C-A 19401929-C-A ***
15025185-C-A 12913273-C-A ***
14894034-G-T 12782100-G-T ***
21318169-T-A 19156283-T-A ***
56830130-T-TGC ***
19052475-C-A 16940595-C-A ***
21569937-C-A 19408051-C-A ***
18645033-GA-G 16533153-GA-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN20755910196974506527377595
Used in age calculations910196974506527377595
Counts of SNPs2324
Variant counts last updated 2019-07-19 21:35:16.



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