Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > CTS3655 > ~22290795-C-A

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
480623
22224602-T-G 20062716-T-G DYZ19 A*
13687636-C-T 11531960-C-T A*
28817491-A-C 26671344-A-C A*
22450561-C-G 20288675-C-G DYZ19 A*
4931727-C-T 5063686-C-T BY58465 +
19420033-C-T 17308153-C-T BY128939 YY+
5060405-A-G 5192364-A-G BY58523 +
8081606-A-G 8213565-A-G BY69787 YY+
21191987-C-T 19030101-C-T BY131003 YY+
8481572-C-T 8613531-C-T BY156013 YY+
8651063-T-A 8783022-T-A BY74936 YY+
8683952-G-A 8815911-G-A BY75167 YY+
8888598-TCACA-T 9020557-TCACA-T +
17980155-A-G 15868275-A-G BY118938 Y+
18703451-A-G 16591571-A-G BY123256 YY+
17948150-C-T 15836270-C-T BY47187 YY+
17302819-A-T 15190939-A-T BY113639 YY+
13825528-G-A 11704822-G-A BY90692 +
17282790-G-A 15170910-G-A BY113461 YY+
17094340-T-A 14982460-T-A BY112251 YY+
16906887-T-C 14795007-T-C BY111006 YY+
15898514-G-A 13786634-G-A BY104787 YY+
18235723-G-A 16123843-G-A BY121070 Y+
15690648-T-C 13578768-T-C BY103312 YY+
7514752-T-C 7646711-T-C BY65543 Y+
8037748-G-T 8169707-G-T BY53722 YY12×T+
6224715-G-A 6356674-G-A BY59496 IR3_Dst +
7034529-T-C 7166488-T-C BY62936 YY+
14624252-T-C 12512452-T-C BY39949L128 PF3499 BY27144 YY21×AC+
17841372-C-A 15729492-C-A BY117712 YY+
22747127-C-T 20585241-C-T BY140498 YY+
13806561-AGAATG-A 11685855-AGAATG-A 7×GAATG+
7391551-T-G 7523510-T-G BY64925 YY+
28758464-T-C 26612317-T-C BY151030 Y+
17980072-G-A 15868192-G-A Y31721Y31707 Y+
23063548-A-G 20901662-A-G BY142672 YY+
6400761-G-A 6532720-G-A BY60171 +
6643146-T-A 6775105-T-A BY60469 YY+
19358849-T-TTCTATCTA 17246969-T-TTCTATCTA 10×TCTA*
18337175-G-A 16225295-G-A P6_Prx *
18471919-C-T 16360039-C-T P6_Dst *
18075514-GGATAGATAGATA-G 15963634-GGATAGATAGATA-G 11×GATA*
22257407-A-T 20095521-A-T DYZ19 *
22317557-A-T 20155671-A-T DYZ19 *
10935599-T-C *
10757198-C-A **
10961513-A-T **
10954786-C-A **
10844167-C-A **
10961494-C-A **
10844162-C-T **
10935453-A-T **
10828970-T-G **
10838962-C-A **
10844197-C-G **
10826533-CA-C **
10971167-C-CTTGAA **
10971549-T-C **
10815638-C-A **
10807847-T-A **
10781702-A-T **
10779323-C-A **
10935439-C-T **
10869022-C-A **
10857087-C-A **
10909733-C-G **
10938760-AAACT-A **
10919463-G-C **
10938768-CT-C **
10954506-C-G **
10938739-CA-C **
10926698-C-A **
10909804-C-G **
10909785-T-A **
10954520-C-G **
10909816-C-A **
10896394-A-T **
10938734-C-G **
10927388-A-T **
10896112-A-G **
10932962-T-TTCCAC **
10894008-T-G **
10888264-T-G **
10954533-A-T **
10768731-T-A **
10624488-T-G **
10756596-T-A **
7132473-C-A 7264432-C-A **
7723672-T-G 7855631-T-G **
7723662-TTT-C 7855621-TTT-C **
7723660-G-T 7855619-G-T **
7723655-T-TGG 7855614-T-TGG **
7602938-C-A 7734897-C-A **
7524681-C-A 7656640-C-A **
7469902-C-A 7601861-C-A IR1_L **
7414277-CAAAAAAAAAA-C 7546236-CAAAAAAAAAA-C 27×A**
7132251-T-C 7264210-T-C **
8067368-C-A 8199327-C-A **
6930753-C-A 7062712-C-A **
6707483-T-C 6839442-T-C **
6293335-G-T 6425294-G-T IR3_Dst 11×T**
6214492-T-G 6346451-T-G IR3_Dst **
6130183-C-A 6262142-C-A **
5669815-C-A 5801774-C-A **
5458538-C-A 5590497-C-A **
5226144-A-AT 5358103-A-AT **
5226138-A-C 5358097-A-C **
7922785-C-A 8054744-C-A **
9025395-C-A 9187786-C-A **
10748314-T-G **
10651599-A-T **
10693136-C-G **
10689115-T-TCCAC **
10689090-T-A **
10687006-T-G **
10683250-C-G **
10654160-T-G **
10651663-C-G **
10651626-T-G **
10624511-C-T **
9674939-G-C 9837330-G-C IR3_Prx **
10624494-T-G **
10987181-C-G **
10624478-C-G **
10624468-C-G **
10624459-G-C **
9978567-T-G 10140958-T-G **
9974333-G-T 10136724-G-T **
9824117-C-A 9986508-C-A **
9690044-T-G 9852435-T-G IR3_Prx **
10981976-C-A **
56850344-GGCA-G **
10987198-AT-A **
19524479-C-G 17412599-C-G **
21731530-G-A 19569644-G-A FT10773 **
21584146-C-A 19422260-C-A **
21524700-C-A 19362814-C-A **
21394506-C-A 19232620-C-A **
21276617-C-A 19114731-C-A **
20842497-G-A 18680611-G-A P4_Dst **
19966618-GAGA-G 17854738-GAGA-G P5_Prx 5×AGA**
19706079-C-A 17594199-C-A P5_Prx **
19600508-G-GGT 17488628-G-GGT P5_Prx **
19435775-A-C 17323895-A-C **
22155512-C-A 19993626-C-A **
19435761-A-C 17323881-A-C **
18863768-G-T 16751888-G-T **
18395776-TAA-T 16283896-TAA-T P6_Gap **
18266230-C-A 16154350-C-A **
18174725-G-T 16062845-G-T **
17666503-G-A 15554623-G-A **
17527327-C-CATAT 15415447-C-CATAT 8×AT**
17370807-A-G 15258927-A-G **
17301257-A-AAAT 15189377-A-AAAT **
17170354-T-C 15058474-T-C **
22092601-CTTTATTTATTTA-C 19930715-CTTTATTTATTTA-C 12×TTTA**
22229298-C-T 20067412-C-T DYZ19 **
16704615-C-A 14592735-C-A **
24403806-G-T 22257659-G-T **
56850214-T-A **
56850208-T-G **
56850207-A-G **
56843720-C-A **
56829828-T-G **
28802669-C-A 26656522-C-A **
27823804-T-G 25677657-T-G P1_Y2 **
26153576-T-G 24007429-T-G P1_Y1 **
26057948-C-A 23911801-C-A P1_Y1 **
25030943-C-A 22884796-C-A g1 **
23952680-A-C 21806533-A-C **
22268161-A-G 20106275-A-G DYZ19 **
23807555-T-A 21645669-T-A **
23386482-C-A 21224596-C-A **
23338280-A-G 21176394-A-G **
23285258-T-G 21123372-T-G **
22869603-C-A 20707717-C-A **
22675591-A-C 20513705-A-C **
22510547-T-A 20348661-T-A DYZ19 **
22342118-C-T 20180232-C-T DYZ19 **
22342106-T-A 20180220-T-A DYZ19 **
22309899-G-A 20148013-G-A DYZ19 **
17071486-A-C 14959606-A-C **
16429273-G-A 14317393-G-A **
10991204-C-A **
13456837-TATTCCATTCCATTCC-T 11301161-TATTCCATTCCATTCC-T 7×ATTCC**
13748302-T-A 11592626-T-A **
13705502-A-AATACG 11549826-A-AATACG **
13697182-C-T 11541506-C-T **
13696938-T-A 11541262-T-A **
13696918-T-A 11541242-T-A **
13696907-T-A 11541231-T-A **
13577962-G-C 11422286-G-C **
13480535-A-G 11324859-A-G **
13456861-C-G 11301185-C-G **
13446572-T-G 11290896-T-G **
11652984-G-T **
13446559-C-A 11290883-C-A **
13445498-G-T 11289822-G-T **
13351057-C-A 11195381-C-A **
13296478-G-A 11140802-G-A **
11019938-T-G **
11019901-T-G **
11009023-C-A **
11006093-A-T **
11006091-C-G **
11000708-C-A **
11645833-G-T **
11666569-A-C **
15899138-TGATCTCC-T 13787258-TGATCTCC-T **
14246712-AG-A 12126006-AG-A **
15743888-A-C 13632008-A-C **
15686930-C-A 13575050-C-A **
15156704-C-A 13044791-C-A 9×A**
15092408-C-A 12980497-C-A **
15034897-T-A 12922985-T-A **
14747380-A-C 12635449-A-C **
14720436-T-A 12608504-T-A **
14671688-G-T 12559754-G-T **
14379333-G-T 12258629-G-T **
14339893-C-A 12219188-C-A **
14224190-C-A 12103484-C-A **
11675820-T-A **
14176078-C-A 12055372-C-A **
14100323-T-G 11979617-T-G **
13960168-C-A 11839462-C-A **
13958678-A-C 11837972-A-C **
13910386-C-A 11789680-C-A **
13896304-C-A 11775598-C-A **
13809733-G-T 11689027-G-T **
13809727-T-A 11689021-T-A **
13809692-T-C 11688986-T-C **
11677046-C-G **
13456863-A-C 11301187-A-C **
5190895-C-A 5322854-C-A **
5084428-T-C 5216387-T-C **
11643699-G-C **
56850210-T-A **
7436179-C-A 7568138-C-A **
28808638-T-A 26662491-T-A **
10906190-T-G **
10991231-G-A **
56756864-G-T **
7111025-C-A 7242984-C-A **
10844185-T-C **
17188239-C-A 15076359-C-A **
10651622-G-C **
10805395-T-C **
18660173-C-A 16548293-C-A **
10654100-C-A **
10978774-A-C **
10978772-G-T **
10844838-C-T **
11027518-C-T **
10896156-A-C **
13708327-A-T 11552651-A-T **
10917516-G-T **
10757206-T-C **
23355304-C-A 21193418-C-A **
10624482-G-C **
17318342-C-A 15206462-C-A **
13705510-G-A 11549834-G-A **
11016894-C-A **
13696884-G-A 11541208-G-A **
16430083-C-A 14318203-C-A **
20101751-C-A 17989871-C-A P5_Dst **
13926617-C-A 11805911-C-A **
10946892-C-A **
14596029-C-A 12484229-C-A **
21738704-C-A 19576818-C-A **
9952176-C-A 10114567-C-A **
17231417-C-A 15119537-C-A **
3831087-A-C 3963046-A-C **
10654159-T-G **
28808649-G-T 26662502-G-T **
10655818-C-A **
13446605-C-T 11290929-C-T **
10896111-C-T **
17372125-C-A 15260245-C-A **
13748283-T-A 11592607-T-A **
28816048-G-A 26669901-G-A **
10961499-T-C **
3829062-T-G 3961021-T-G **
10926718-C-T **
21176999-C-A 19015113-C-A **
10789832-C-CATCAT **
22259727-C-G 20097841-C-G DYZ19 **
14300724-C-A 12180018-C-A **
17387484-T-G 15275604-T-G **
19263496-GAA-G 17151616-GAA-G 14×A**
13943091-C-A 11822385-C-A **
19318174-G-T 17206294-G-T **
20603925-G-T 18442039-G-T P5_Dst **
15374436-A-T 13262556-A-T **
10958775-C-A **
10768657-C-T **
13485657-G-T 11329981-G-T **
13523464-T-TA 11367788-T-TA 9×A**
10892597-C-A **
13857618-GT-C 11736912-GT-C **
19318178-C-CT 17206298-C-CT 28×T**
13460774-T-C 11305098-T-C **
22309937-C-T 20148051-C-T DYZ19 **
22309943-G-T 20148057-G-T DYZ19 **
13460783-G-A 11305107-G-A **
19600498-A-G 17488618-A-G BY176257 P5_Prx **
21996387-G-T 19834501-G-T Z25209 **
2888778-C-G 3020737-C-G Z31492 **
4282570-TAC-T 4414529-TAC-T 17×AC**
13710344-G-A 11554668-G-A **
58862755-A-G 56728116-T-C **
13480676-G-A 11325000-G-A **
10667014-C-G **
13597081-T-C 11441405-T-C **
18825649-A-T 16713769-A-T **
15315421-C-A 13203526-C-A **
10763152-A-T **
10678635-T-C **
10624514-T-A **
10906182-C-T **
10958868-T-C **
10768685-T-C **
13461046-T-A 11305370-T-A **
10792755-T-G **
24300814-T-TG 22154667-T-TG P3_t1 **
10972076-C-A **
3990664-CAAAA-C 4122623-CAAAA-C 18×A**
11007492-C-T **
11007465-CTTCATTCTAT-C **
10789841-C-T **
13323788-C-A 11168112-C-A **
28722307-C-A 26576160-C-A **
13708355-G-A 11552679-G-A **
23252583-G-T 21090697-G-T **
15374434-A-T 13262554-A-T **
11646261-T-TTTAGG **
10802654-T-A **
10805390-C-T **
7723675-T-A 7855634-T-A **
6582555-G-T 6714514-G-T **
21234733-C-A 19072847-C-A **
14556404-C-A 12444605-C-A **
10906200-C-A **
16422019-C-A 14310139-C-A **
10776308-G-T **
10689125-C-A **
56838277-G-T **
17301258-AAAAG-A 15189378-AAAAG-A **
10815927-C-T **
14831874-C-A 12719941-C-A **
10767454-G-C **
13295914-C-A 11140238-C-A **
10896103-C-A **
56850198-T-A **
17560580-C-A 15448700-C-A **
10929751-C-A **
13697156-A-C 11541480-A-C **
13697148-T-C 11541472-T-C **
10909743-A-C **
13460733-G-A 11305057-G-A **
4567180-C-A 4699139-C-A **
10970905-C-A **
13697143-T-C 11541467-T-C **
10654101-C-G **
9416716-C-A 9579107-C-A **
15402893-C-A 13291013-C-A **
11016935-A-C **
10935454-C-T **
18937378-C-A 16825498-C-A **
3111682-A-C 3243641-A-C **
3012487-C-A 3144446-C-A **
2759957-G-A 2891916-G-A **
2759934-C-T 2891893-C-T **
2758842-C-CAA 2890801-C-CAA 19×A**
17346132-G-T 15234252-G-T **
19496219-C-A 17384339-C-A **
10906178-C-T **
10906172-C-G **
18151803-C-A 16039923-C-A **
10881920-C-A **
10768672-C-A **
20506409-G-T 18344523-G-T P5_Dst **
6541189-AT-A 6673148-AT-A 8×T**
20506402-A-T 18344516-A-T P5_Dst **
14627180-A-G 12515248-A-G **
10767459-T-C **
11675819-C-A **
14826541-T-G 12714608-T-G **
10926714-A-T **
2759967-C-T 2891926-C-T **
20459160-G-T 18297274-G-T P5_Dst **
13446523-T-A 11290847-T-A **
10768640-T-C **
10654098-C-G **
19558808-T-C 17446928-T-C **
10896147-A-C **
20850612-A-ATGTG 18688726-A-ATGTG P4_Dst 11×TG**
11003684-G-A **
10861699-C-A **
24295864-T-TG 22149717-T-TG P3_t1 **
13446546-A-T 11290870-A-T **
8045352-C-A 8177311-C-A **
11009399-G-T **
28462042-C-A 26315895-C-A **
13460767-A-G 11305091-A-G **
10691104-A-G **
10909814-G-C **
10691103-C-G **
10691084-A-T **
10691077-C-T **
16539595-C-A 14427715-C-A **
10691042-C-CCACTA **
22996853-C-A 20834967-C-A **
23881897-G-T 21720011-G-T **
14100226-C-A 11979520-C-A **
10987093-A-C **
10987085-ATCATT-A **
23066767-G-A 20904881-G-A **
10825152-G-T **
7253743-C-A 7385702-C-A **
23115122-C-A 20953236-C-A **
15198631-A-C 13086717-A-C **
10767473-C-A **
23066762-A-T 20904876-A-T **
10767468-T-A **
23066779-A-T 20904893-A-T **
10689111-T-A **
10689105-C-T **
22108604-C-A 19946718-C-A **
10768690-TTCTAC-T **
23066758-T-G 20904872-T-G **
19345128-TA-T,TAA 17233248-TA-T,TAA 18×A***
7104436-TTC-T 7236395-TTC-T 9×TC***
13454223-TTTCCA-T 11298547-TTTCCA-T 12×TTCCA***
10786062-T-C ***
2685522-C-A 2817481-C-A ***
22515122-A-T 20353236-A-T ***
22538201-T-C 20376315-T-C ***
14754067-C-CT 12642136-C-CT 27×T***
10980728-C-CG ***
13483855-G-A 11328179-G-A ***
8470395-GT-G 8602354-GT-G 10×T***
2728115-G-T 2860074-G-T ***
21758154-AGT-A 19596268-AGT-A 14×GT***
13453651-TC-T 11297975-TC-T ***
10989154-C-G ***
13497919-C-A 11342243-C-A ***
7098902-TAAA-T,TAA 7230861-TAAA-T,TAA 16×A***
21091365-C-A 18929479-C-A S22554 ***
15397096-G-T 13285216-G-T ***
17147904-CT-C,CCAATTGCATGATCT 15036024-CT-C,CCAATTGCATGATCT ***
17147906-C-CTGAAGCCAA 15036026-C-CTGAAGCCAA ***
17147908-T-G,TGCATGA 15036028-T-G,TGCATGA ***
3991945-AACAC-A 4123904-AACAC-A 12×AC***
14557653-C-T 12445854-C-T ***
13489061-C-G 11333385-C-G ***
10849808-ATCTTT-A ***
10883974-C-G ***
13489081-G-T 11333405-G-T ***
22538489-C-A 20376603-C-A ***
56835954-C-A ***
9865366-C-A 10027757-C-A ***
9494967-C-T 9657358-C-T ***
9494962-G-C 9657353-G-C ***
10924371-C-G ***
11672621-C-A ***
23633371-CT-C,CTT 21471485-CT-C,CTT 21×T***
9136669-TTATA-T,TTA 9299060-TTATA-T,TTA 11×TA***
10924423-A-C ***
13457995-C-A 11302319-C-A ***
22029898-C-A 19868012-C-A ***
18165150-T-TA 16053270-T-TA 9×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 480623956167078144137712826
Used in age calculations956167078144137712826
Counts of SNPs2524
Variant counts last updated 2019-02-26 23:22:26.



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