Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > BY25450 > FGC5618 > FGC5629 > L226 > FGC5660 > Z17669 > DC9 > DC8

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
436834
17398966-T-TA 15287086-T-TA 11×AA*
18640859-T-TA 16528979-T-TA 10×AA*
20661111-G-GT 18499225-G-GT P4_Prx 9×TA*
20637809-T-G 18475923-T-G P4_Prx A*
20774862-G-A 18612976-G-A P4_Prx A*
20774863-T-C 18612977-T-C P4_Prx A*
20774880-A-G 18612994-A-G P4_Prx A*
20779678-T-G 18617792-T-G P4_Prx A*
26102762-T-G 23956615-T-G P1_Y1 A*
6932141-G-T 7064100-G-T FT178800 YY+
8366063-A-C 8498022-A-C YY+
8404381-G-A 8536340-G-A YY+
13717178-T-C 11561502-T-C +
14655483-G-A 12543548-G-A YY+
15210433-T-C 13098519-T-C YY+
16134047-C-A 14022167-C-A +
19119777-G-A 17007897-G-A YY+
21718096-C-T 19556210-C-T YY+
22084052-A-G 19922166-A-G YY+
22270560-A-C 20108674-A-C BY215021 DYZ19 +
22470111-C-A 20308225-C-A BY222353 DYZ19 +
19411972-G-A 17300092-G-A BY47822 **
22703630-G-A 20541744-G-A **
13349633-G-T 11193957-G-T FGC36978 **
22297891-G-A 20136005-G-A DYZ19 **
3279614-G-A 3411573-G-A FTB61533 **
8126299-TTTTTA-T 8258258-TTTTTA-T 9×TTTTA**
13317245-C-A 11161569-C-A FGC88 **
13453305-T-G 11297629-T-G **
13486624-C-A 11330948-C-A **
3563184-G-A 3695143-G-A **
7237269-A-G 7369228-A-G Z15794 **
13468200-A-G 11312524-A-G **
13481952-T-C 11326276-T-C **
59013975-C-CT 56867828-C-CT 11×T**
13481946-A-C 11326270-A-C **
17726455-CA-C 15614575-CA-C 11×A**
13481979-T-A 11326303-T-A **
16116267-G-T 14004387-G-T P8_Prx **
4498285-C-A 4630244-C-A **
28438188-CA-C 26292041-CA-C P1_gr2 31×A**
10748304-T-G **
10748314-T-A **
10748318-A-C **
13865815-G-C 11745109-G-C **
6984670-T-C 7116629-T-C **
18825599-C-A 16713719-C-A **
16738136-C-A 14626256-C-A **
10745392-T-A **
10745400-T-C **
10745434-G-C **
10745441-A-T **
10667996-GTCCAC-G **
10664844-C-G **
13481961-T-A 11326285-T-A **
10764643-T-A **
10659533-A-G **
10659547-C-T **
18370848-T-TC 16258968-T-TC P6_Prx **
13480479-G-T 11324803-G-T **
16904730-GA-G 14792850-GA-G **
10673835-C-G **
10994314-C-A **
24404133-G-T 22257986-G-T **
11020201-C-A **
27952124-TATATAC-T 25805977-TATATAC-T P1_Y2 **
19187652-C-T 17075772-C-T **
19668815-ATCCT-A 17556935-ATCCT-A P5_Prx **
26099756-A-T 23953609-A-T P1_Y1 **
28155679-G-T 26009532-G-T P1_b4 **
5775069-C-A 5907028-C-A **
10792282-T-G **
10792289-A-T **
17375593-C-A 15263713-C-A **
22297897-T-A 20136011-T-A DYZ19 **
10686703-T-G **
9996089-C-A 10158480-C-A **
6090471-C-A 6222430-C-A **
10824176-C-G **
9962608-C-A 10124999-C-A **
7990617-C-A 8122576-C-A **
7116171-C-A 7248130-C-A **
13217081-C-A 11061405-C-A **
13483762-C-A 11328086-C-A **
22360176-T-C 20198290-T-C DYZ19 **
2718903-G-TT 2850862-G-TT **
18050236-C-A 15938356-C-A **
10763361-A-T **
15113445-C-A 13001532-C-A **
3078551-C-A 3210510-C-A **
4075739-G-T 4207698-G-T **
8793031-A-ATT 8924990-A-ATT 13×T**
18346519-ATT-A 16234639-ATT-A P6_Prx **
19203885-C-A 17092005-C-A **
28558577-C-A 26412430-C-A **
8253618-C-A 8385577-C-A **
16760124-T-A 14648244-T-A **
10757397-C-T **
6645497-CA-C 6777456-CA-C **
18928557-T-G 16816677-T-G **
10783678-C-A **
16704408-G-T 14592528-G-T **
10757359-C-G **
17210982-C-A 15099102-C-A **
22366318-C-A 20204432-C-A DYZ19 **
13480423-C-T 11324747-C-T **
18891184-C-CTT 16779304-C-CTT 13×T**
11018145-C-A **
28500846-C-A 26354699-C-A **
16451524-T-G 14339644-T-G **
5454783-C-A 5586742-C-A **
17188305-C-A 15076425-C-A **
5249067-G-T 5381026-G-T **
13474640-G-A 11318964-G-A **
22207285-C-A 20045399-C-A **
19302739-G-T 17190859-G-T **
18346517-G-A 16234637-G-A P6_Prx **
15168852-C-A 13056938-C-A **
18672628-C-A 16560748-C-A **
17095258-C-A 14983378-C-A **
27996129-A-AG 25849982-A-AG P1_Y2 **
10757337-A-T **
6780661-C-A 6912620-C-A **
6808158-G-C 6940117-G-C **
11022119-TC-T **
5965878-C-A 6097837-C-A **
9421324-C-A 9583715-C-A **
13996460-C-A 11875754-C-A **
15061690-C-A 12949782-C-A 13×T**
15397292-G-T 13285412-G-T **
17246884-C-A 15135004-C-A **
10789322-T-C **
18933665-C-A 16821785-C-A **
16237018-C-A 14125138-C-A **
7166874-C-A 7298833-C-A **
6808163-C-A 6940122-C-A **
26010230-C-A 23864083-C-A P1_Y1 **
9944201-G-T 10106592-G-T **
8080679-C-A 8212638-C-A **
23167767-G-T 21005881-G-T **
7371805-C-A 7503764-C-A **
13461853-G-A 11306177-G-A **
13461879-C-G 11306203-C-G **
18708100-C-A 16596220-C-A **
22170339-CT-C 20008453-CT-C **
17503684-G-T 15391804-G-T **
3247728-G-T 3379687-G-T **
9420236-C-A 9582627-C-A **
15657968-C-A 13546088-C-A **
20712282-G-GTA 18550396-G-GTA P4_Prx **
6191332-G-T 6323291-G-T IR3_Dst **
10792256-CCACTT-C **
10792284-T-G **
28802617-TGGAAC-T 26656470-TGGAAC-T **
10792304-A-C **
8635920-C-A 8767879-C-A **
2892707-C-A 3024666-C-A **
2943549-C-A 3075508-C-A FGC66516 **
2943618-A-C 3075577-A-C **
3111743-T-A 3243702-T-A **
3296465-G-T 3428424-G-T **
3330111-T-A 3462070-T-A **
3330164-T-A 3462123-T-A **
3404041-C-A 3536000-C-A **
3497178-A-G 3629137-A-G **
3788380-C-A 3920339-C-A **
3841676-C-A 3973635-C-A **
3869778-G-T 4001737-G-T **
3928199-G-T 4060158-G-T **
4051476-G-T 4183435-G-T **
4065366-C-A 4197325-C-A **
4156558-C-A 4288517-C-A **
4269046-T-C 4401005-T-C **
4293969-G-T 4425928-G-T **
4299325-C-A 4431284-C-A **
4412985-G-T 4544944-G-T **
4604487-C-A 4736446-C-A **
4860391-T-A 4992350-T-A **
4860401-C-A 4992360-C-A **
4864186-T-A 4996145-T-A **
4905426-A-G 5037385-A-G **
4991613-C-A 5123572-C-A **
5316145-G-T 5448104-G-T **
5327314-C-A 5459273-C-A **
5359025-C-A 5490984-C-A **
5362799-G-T 5494758-G-T **
5422027-T-C 5553986-T-C **
5486924-T-A 5618883-T-A **
5716365-G-T 5848324-G-T **
5798322-A-G 5930281-A-G **
5867197-C-A 5999156-C-A **
6011323-C-T 6143282-C-T **
6027054-G-T 6159013-G-T **
6107444-A-C 6239403-A-C **
6107445-CTTCATCACTAAA-C 6239404-CTTCATCACTAAA-C **
6225297-T-G 6357256-T-G IR3_Dst **
6341148-C-A 6473107-C-A IR3_Dst **
6430301-G-T 6562260-G-T **
6442465-A-G 6574424-A-G **
6444226-C-CT 6576185-C-CT 8×T**
6455471-C-A 6587430-C-A **
6492776-A-C 6624735-A-C **
6727038-C-A 6858997-C-A **
6808141-A-ATT 6940100-A-ATT **
6808134-CAAAAAAAAAAAAAA-C 6940093-CAAAAAAAAAAAAAA-C 22×A**
6808161-G-A 6940120-G-A **
6875584-C-A 7007543-C-A **
7029648-T-G 7161607-T-G **
7128104-G-T 7260063-G-T **
7216535-A-G 7348494-A-G **
7427978-C-A 7559937-C-A **
8130653-A-G 8262612-A-G **
8171729-T-G 8303688-T-G **
8281663-C-A 8413622-C-A **
8731863-G-T 8863822-G-T **
9411082-G-T 9573473-G-T **
9444896-T-C 9607287-T-C **
9820447-G-T 9982838-G-T **
10684164-CT-C **
10757347-CT-C **
10757351-A-T **
10773157-C-T **
10782518-C-A **
10792277-C-T **
10798351-C-CT **
10798352-AT-A **
10798359-T-A **
10843138-T-C **
10910909-G-T **
10945767-G-T **
10977439-C-A **
10985220-A-ACTCCT **
10985233-ACTCTC-A **
10985267-T-A **
10990755-C-A **
11030662-C-A **
13252924-G-T 11097248-G-T **
13350057-A-G 11194381-A-G **
13461773-TTTG-T 11306097-TTTG-T **
13461794-G-T 11306118-G-T **
13461808-G-C 11306132-G-C **
13461813-C-T 11306137-C-T **
13461894-T-A 11306218-T-A **
13486616-G-T 11330940-G-T **
13624314-G-T 11468638-G-T **
13805257-G-A 11684551-G-A BY26324 **
13921576-C-A 11800870-C-A **
14100346-C-T 11979640-C-T **
14157738-C-A 12037032-C-A **
14215016-G-T 12094310-G-T **
14467322-G-T 12346591-G-T **
15034940-C-A 12923028-C-A **
15161131-C-A 13049217-C-A **
15346878-C-A 13234997-C-A **
15401980-T-C 13290100-T-C **
15469303-C-A 13357423-C-A **
15767019-A-C 13655139-A-C **
15866205-G-A 13754325-G-A **
15866268-CAAAAAAAAAAAAAAAAAAAAAAAAAAA-C 13754388-CAAAAAAAAAAAAAAAAAAAAAAAAAAA-C 43×A**
15916383-G-T 13804503-G-T **
16029306-T-C 13917426-T-C **
16116259-C-T 14004379-C-T P8_Prx **
16713017-C-A 14601137-C-A **
16760131-A-T 14648251-A-T **
17561881-C-A 15450001-C-A **
18692653-G-C 16580773-G-C **
18982589-A-C 16870709-A-C **
18982595-G-C 16870715-G-C 10×A**
19155504-G-T 17043624-G-T **
19213540-C-G 17101660-C-G **
19251757-G-T 17139877-G-T **
19253224-G-A 17141344-G-A **
19312910-C-A 17201030-C-A **
19528523-TCA-T 17416643-TCA-T **
19537946-G-T 17426066-G-T **
20022469-T-G 17910589-T-G P5_Prx **
20746683-T-TG 18584797-T-TG P4_Prx **
21211299-A-T 19049413-A-T **
21459354-C-A 19297468-C-A **
21544350-T-C 19382464-T-C FT43680 **
21775171-C-T 19613285-C-T **
21939765-G-T 19777879-G-T **
21949215-G-T 19787329-G-T **
21964383-C-A 19802497-C-A **
22134342-T-C 19972456-T-C **
22342472-G-A 20180586-G-A DYZ19 **
22624343-T-C 20462457-T-C **
22653276-C-A 20491390-C-A **
22838945-G-T 20677059-G-T **
22852679-T-C 20690793-T-C **
23203782-C-A 21041896-C-A **
23787363-G-T 21625477-G-T **
23838943-C-A 21677057-C-A **
21754030-C-A **
24509482-A-G 22363335-A-G **
24595372-T-C 22449225-T-C P3_t2 **
26143228-A-C 23997081-A-C P1_Y1 **
26143243-A-G 23997096-A-G P1_Y1 **
28370037-G-GAT 26223890-G-GAT P1_gr2 **
28621895-T-G 26475748-T-G **
28748255-C-A 26602108-C-A **
28800211-G-C 26654064-G-C **
56830035-C-A **
56844691-C-A **
56855991-C-T **
58978549-A-T 56832402-A-T ***
20804857-ATGTG-A 18642971-ATGTG-A P4_Gap 14×TG***
17375889-G-T 15264009-G-T ***
13484059-A-G 11328383-A-G ***
58980929-T-C 56834782-T-C ***
10994255-C-T ***
10994267-T-TTCTAAA ***
10994273-T-C ***
10994281-A-T ***
11643708-G-C ***
10811332-ATCCAC-A ***
10760370-C-A,G ***
10789341-A-T ***
13483434-C-T 11327758-C-T ***
7207450-C-A 7339409-C-A ***
4302143-C-A 4434102-C-A ***
10821923-A-C ***
10988577-T-A ***
13461841-C-T 11306165-C-T ***
19546206-C-A 17434326-C-A ***
9907461-G-T 10069852-G-T ***
13453361-T-A 11297685-T-A ***
10693336-C-A ***
18005621-C-A 15893741-C-A P7_Gap ***
10760682-C-A ***
24278183-CAAGAAAGAAAGA-C,CAAGA 22132036-CAAGAAAGAAAGA-C,CAAGA P3_b1 22×AAGA***
56830053-C-G ***
2799506-A-C 2931465-A-C ***
4302127-A-T 4434086-A-T ***
4444425-T-C 4576384-T-C ***
9907362-C-T 10069753-C-T ***
10994249-G-C,T ***
12730473-ATTTTT-A,ATTTT 21×T***
15325123-CT-C,CTT 13213241-CT-C,CTT 11×T***
16244187-C-CA 14132307-C-CA ***
16641870-TACATATATATATATATATATATATATCTGA-T 14529990-TACATATATATATATATATATATATATCTGA-T ***
17037360-A-G 14925480-A-G ***
17037367-G-T 14925487-G-T ***
17037372-T-C 14925492-T-C ***
17041927-C-A 14930047-C-A ***
17397285-A-G 15285405-A-G ***
18855403-CTTTTT-C,CTTTTTT 16743523-CTTTTT-C,CTTTTTT 14×T***
19463485-A-G 17351605-A-G ***
19520845-TAAAA-T,TAAA 17408965-TAAAA-T,TAAA 21×A***
22210880-C-A 20048994-C-A ***
22278728-G-T 20116842-G-T DYZ19 ***
22783175-A-G 20621289-A-G ***
28800244-A-T 26654097-A-T ***
28800266-G-GGAGCA 26654119-G-GGAGCA ***
28800272-G-T 26654125-G-T ***
56829989-A-AATCTT ***
56844211-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.