Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > L513/S215/DF1 > S6365 > Z16385 > Z16386 > Z16387

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC2
X22T4
BigY3
B204230
FGC2
LZPHV
BigY2
B204230
56836686-A-G A*
18517327-T-C 16405447-T-C P6_Dst A*
28816778-G-T 26670631-G-T A*A*
13450426-T-C 11294750-T-C A*
13695030-T-C 11539354-T-C A*
20665496-C-T 18503610-C-T P4_Prx A*A*
26311156-C-T 24165009-C-T P1_Y1 A*
28817626-G-C 26671479-G-C A*
56832668-C-A A*
22308619-G-A 20146733-G-A DYZ19 A*
13451667-T-C 11295991-T-C A*
23863688-T-A 21701802-T-A BY148532 Y++++
14078323-C-T 11957617-C-T BY92814 YY++++
22569289-C-T 20407403-C-T BY139132 YY++++
23148758-AAAG-A 20986872-AAAG-A *+++
14033105-T-C 11912399-T-C BY92480 YY++++
13814595-AGGAATGGAATGGAAT-A 11693889-AGGAATGGAATGGAAT-A 10×GGAAT+*+*
7387137-G-C 7519096-G-C BY64892 YY++++
5021165-A-C 5153124-A-C FT94399 ++
4791071-T-C 4923030-T-C FT94384 ++
7014891-C-G 7146850-C-G BY62856 YY++++
18249669-T-C 16137789-T-C Z14112 Y++++
8335633-G-C 8467592-G-C BY71774 YY++++
8559979-C-T 8691938-C-T BY74033 YY++++
8589382-G-C 8721341-G-C BY74309 YY++++
9408216-C-T 9570607-C-T BY79283 YY++++
23986897-A-G 21840750-A-G Y++++
10777714-T-C +
22294234-T-A 20132348-T-A BY216495 DYZ19 ++++
10986652-A-ACTG +
18076525-C-T 15964645-C-T YY++++
19030964-A-T 16919084-A-T FT94709 Y++
17110649-A-T 14998769-A-T BY112367 YY++++
9674257-T-G 9836648-T-G FT94563 IR3_Prx ++****
6134431-C-T 6266390-C-T ++
16799126-T-C 14687246-T-C BY110235 YY++++
25056924-C-T 22910777-C-T g1 ++
18655784-T-C 16543904-T-C FT94697 YY++*****
19563744-T-TA 17451864-T-TA ++++
9944749-T-C 10107140-T-C Y*
9944573-G-A 10106964-G-A Y*
9944582-C-T 10106973-C-T Y*
13399269-T-C 11243593-T-C *
9944881-T-C 10107272-T-C Y*
9945983-A-G 10108374-A-G Y*
9946003-T-A 10108394-T-A Y*
13445389-A-G 11289713-A-G *
9944564-A-T 10106955-A-T Y*
3103153-G-T 3235112-G-T *
6403090-G-A 6535049-G-A *
13443531-T-C 11287855-T-C *
17317720-T-TCA,TCACA 15205840-T-TCA,TCACA 23×CA*
13249403-C-T 11093727-C-T *
13552721-C-T 11397045-C-T *
9944956-A-T 10107347-A-T Y*
28582941-T-C 26436794-T-C *
59018114-T-G 56871967-T-G *
13466809-C-T 11311133-C-T **
59027554-A-T 56881407-A-T *
59027513-G-A 56881366-G-A *
59027512-C-G 56881365-C-G *
10654388-A-G *
59018842-C-A 56872695-C-A *
13443618-C-A 11287942-C-A *
13437673-A-C 11281997-A-C *
13442461-A-T 11286785-A-T *
22422514-C-G 20260628-C-G DYZ19 *****
13354036-A-G 11198360-A-G *
13285744-C-G 11130068-C-G *
13270307-G-A 11114631-G-A BY3638 A12511 *
13399280-T-C 11243604-T-C *
13400253-T-C 11244577-T-C *
13403991-C-A 11248315-C-A *
13261134-A-G 11105458-A-G *
13260984-T-A 11105308-T-A *
13251528-C-G 11095852-C-G *
13244783-G-A 11089107-G-A *
13244782-T-C 11089106-T-C *
13244726-G-T 11089050-G-T *
59017991-G-A 56871844-G-A *
13442455-A-T 11286779-A-T *
13404135-G-A 11248459-G-A *
9980450-C-T 10142841-C-T Y*
9980446-A-G 10142837-A-G Y*
13404189-C-G 11248513-C-G *
9980403-C-A 10142794-C-A Y*
9965282-C-T 10127673-C-T Y***
9965278-A-G 10127669-A-G Y***
9965131-A-T 10127522-A-T Y*
9964281-G-A 10126672-G-A Y*
9946014-T-A 10108405-T-A Y*
13411636-C-T 11255960-C-T *
13395183-A-G 11239507-A-G *
59018074-A-G 56871927-A-G *
28582622-G-A 26436475-G-A A13716 *
59009176-T-C 56863029-T-C *
13558724-C-G 11403048-C-G *
13557384-T-C 11401708-T-C *
13557397-T-A 11401721-T-A *
13557422-T-G 11401746-T-G *
13557429-C-A 11401753-C-A *
13557652-T-G 11401976-T-G *
13557668-C-A 11401992-C-A *
13558674-A-T 11402998-A-T *
13557119-C-G 11401443-C-G *
13563647-C-G 11407971-C-G *
13563681-G-A 11408005-G-A *
13558712-A-T 11403036-A-T *
13563985-G-A 11408309-G-A *
13564004-A-G 11408328-A-G *
13564080-T-C 11408404-T-C *
13557365-T-A 11401689-T-A A8904 *
13557116-C-T 11401440-C-T *
13564273-T-A 11408597-T-A *
13549853-T-A 11394177-T-A *
13546567-G-A 11390891-G-A *
13546700-G-C 11391024-G-C *
13546719-C-T 11391043-C-T ACT2634 *
13549701-T-A 11394025-T-A F18198 *
13549791-TAAAA-T 11394115-TAAAA-T *
13549813-A-G 11394137-A-G *
13549882-G-A 11394206-G-A *
13557042-A-G 11401366-A-G *
13549982-A-G 11394306-A-G *
13551883-T-G 11396207-T-G *
13556121-C-T 11400445-C-T *
13556159-C-T 11400483-C-T *
13556746-A-T 11401070-A-T *
13556778-A-C 11401102-A-C FGC82308 *
13557015-A-G 11401339-A-G *
13564081-G-C 11408405-G-C *
13558707-T-G 11403031-T-G *
59009175-G-C 56863028-G-C *
28582605-T-C 26436458-T-C *
13563713-G-A 11408037-G-A *
13395199-G-A 11239523-G-A *
13395189-G-T 11239513-G-T *
13395184-G-A 11239508-G-A *
10884847-C-T *
28582495-G-A 26436348-G-A *
13493016-G-T 11337340-G-T *
13444868-T-G 11289192-T-G *
28584105-G-A 26437958-G-A *
13251513-C-G 11095837-C-G *
58971523-G-GAACA 56825376-G-GAACA *
59001383-A-T 56855236-A-T *
59002627-G-T 56856480-G-T *
59002632-G-A 56856485-G-A *
13634916-G-A 11479240-G-A *
13563712-T-C 11408036-T-C *
13564789-G-T 11409113-G-T *
13587122-T-C 11431446-T-C *
13564989-G-C 11409313-G-C *
13565045-C-A 11409369-C-A *
13565107-A-G 11409431-A-G *
13565113-G-A 11409437-G-A *
13565116-T-C 11409440-T-C *
13587130-T-A 11431454-T-A *
13586892-G-A 11431216-G-A FGC81202 *
13597981-T-A 11442305-T-A *
13587030-A-G 11431354-A-G ACT5472 *
13587084-G-T 11431408-G-T *
13591415-T-A 11435739-T-A *
13591428-G-A 11435752-G-A *
13591443-G-A 11435767-G-A *
13591495-C-T 11435819-C-T *
13587107-C-T 11431431-C-T *
13492942-C-T 11337266-C-T *
13533349-G-A 11377673-G-A *
13503362-G-A 11347686-G-A *
9941822-G-A 10104213-G-A Y*
13583616-C-T 11427940-C-T *
13251213-A-G 11095537-A-G *
13546463-T-C 11390787-T-C F18196 *
13609037-C-G 11453361-C-G *
13609042-C-T 11453366-C-T *
13609045-G-T 11453369-G-T *
58992791-A-C,G 56846644-A-C,G *
13523465-A-C 11367789-A-C *
56855237-A-T *
13435748-C-G 11280072-C-G *
13435672-T-G 11279996-T-G *
58866061-T-C 56724810-A-G *
17662167-GTAGATAGATAGA-G,GTAGA 15550287-GTAGATAGATAGA-G,GTAGA 16×TAGA*
56883991-C-T *
13591179-A-G 11435503-A-G FGC69320 *
13709001-T-A,C 11553325-T-A,C *
13483339-T-G 11327663-T-G *
22486949-A-G 20325063-A-G DYZ19 ****
59031098-T-C 56884951-T-C *
59031248-T-A 56885101-T-A *
59031342-CA-C 56885195-CA-C *
13483345-G-C 11327669-G-C ****
13276136-A-G 11120460-A-G *
13261324-A-G 11105648-A-G *
58973675-TTTCCTTTCCATTCCA-T 56827528-TTTCCTTTCCATTCCA-T **
13445784-T-C 11290108-T-C *
9965063-T-TTAGG 10127454-T-TTAGG *
13528039-T-A 11372363-T-A *
28582547-A-G 26436400-A-G *
13503039-TA-T 11347363-TA-T *
9964239-T-A 10126630-T-A Y*
28797309-A-G 26651162-A-G *
13543218-A-G 11387542-A-G *
13483965-C-G 11328289-C-G *
59025921-T-C 56879774-T-C *
9931521-T-G 10093912-T-G Y*
13435717-G-A 11280041-G-A *
9941944-T-A 10104335-T-A Y*
28815569-A-C 26669422-A-C *
28805853-G-C 26659706-G-C ****
13514038-A-C 11358362-A-C *
9931513-C-G 10093904-C-G Y*
13398261-G-A 11242585-G-A *
13398319-C-A 11242643-C-A *
56872325-G-A,T *
13244693-C-A 11089017-C-A *
9108790-A-G *
10893779-T-C *
9931533-A-G 10093924-A-G A17300 Y*
9931531-C-CGGT 10093922-C-CGGT *
13691686-T-C 11536010-T-C ****
7128621-CGTGT-C,CGT 7260580-CGTGT-C,CGT 23×GT*
13345111-AATTG-A 11189435-AATTG-A *
9941854-T-C 10104245-T-C Y*
13496575-T-TTG 11340899-T-TTG *
13598387-TTAAATACA-T 11442711-TTAAATACA-T *
13395224-C-G 11239548-C-G *
13395236-C-A 11239560-C-A *
28549469-G-T 26403322-G-T *
9941848-A-G 10104239-A-G Y*
9941860-T-A 10104251-T-A A16988 Y*
13471841-C-T 11316165-C-T ****
9941869-C-T 10104260-C-T A16989 Y*
9941885-C-A 10104276-C-A Y*
58866051-T-A 56724820-A-T *
13524378-T-C 11368702-T-C *
10677085-G-T *
56863228-G-A *
59027650-A-G 56881503-A-G *
59024628-A-T 56878481-A-T *
13503438-A-T 11347762-A-T *
58968064-C-T 56821917-C-T *
13711960-A-G 11556284-A-G ****
13712566-CT-C 11556890-CT-C *
28582545-T-C 26436398-T-C *
28582566-C-G 26436419-C-G *
28587897-C-T 26441750-C-T CTS12459 *
28791875-G-C 26645728-G-C *
58969833-C-T 56823686-C-T *
13635012-G-A 11479336-G-A *
58970308-G-A 56824161-G-A *
58971316-G-A 56825169-G-A *
58996075-A-AG 56849928-A-AG *
59002284-C-T 56856137-C-T *
59002320-G-A 56856173-G-A *
59002362-C-T 56856215-C-T *
13694502-G-A 11538826-G-A *
13634898-C-CGT 11479222-C-CGT *
59005020-T-C 56858873-T-C *
13531850-A-T 11376174-A-T *
13503477-ATG-A 11347801-ATG-A *
13504441-T-C 11348765-T-C *
13513412-C-T 11357736-C-T *
13527924-A-G 11372248-A-G *
13527977-T-A 11372301-T-A *
13527981-T-A 11372305-T-A *
13533339-A-G 11377663-A-G *
13586823-A-G 11431147-A-G *
13543758-A-C 11388082-A-C *
13536041-G-T 11380365-G-T *
13540858-T-C 11385182-T-C *
13540902-A-G 11385226-A-G *
13564162-T-G 11408486-T-G *
13586819-G-A 11431143-G-A *
59002728-G-A 56856581-G-A *
59005698-T-G 56859551-T-G *
59024573-G-A 56878426-G-A *
59018588-G-A 56872441-G-A *
59017244-C-T 56871097-C-T *
59017340-G-T 56871193-G-T *
59018069-G-A 56871922-G-A *
59018121-T-C 56871974-T-C *
59018406-T-A 56872259-T-A *
59018426-A-T 56872279-A-T *
59019782-G-A 56873635-G-A *
59015574-A-G 56869427-A-G *
59020900-T-C 56874753-T-C *
59022782-A-G 56876635-A-G *
59022800-C-T 56876653-C-T *
59022839-G-T 56876692-G-T *
59022924-C-T 56876777-C-T *
59024563-T-C 56878416-T-C *
59016510-A-C 56870363-A-C *
59015547-C-T 56869400-C-T *
59005702-A-G 56859555-A-G *
59010161-A-T 56864014-A-T *
59008226-T-G 56862079-T-G *
59008282-T-C 56862135-T-C *
59009290-C-T 56863143-C-T *
59009672-G-A 56863525-G-A *
59009693-C-T 56863546-C-T *
59010007-T-C 56863860-T-C *
59010184-T-C 56864037-T-C *
59014490-C-T 56868343-C-T *
59010751-T-C 56864604-T-C *
59011367-T-A 56865220-T-A *
59012205-T-A 56866058-T-A *
59012232-GTA-G 56866085-GTA-G *
59012514-G-A 56866367-G-A *
59013283-C-T 56867136-C-T *
13545770-C-T 11390094-C-T *
9931519-C-T 10093910-C-T Y*
9994748-T-G 10157139-T-G Y*
13244819-T-G 11089143-T-G *
13587093-C-T 11431417-C-T *
13492264-C-A 11336588-C-A *
13586851-C-G 11431175-C-G *
13586843-T-C 11431167-T-C *
13244834-C-T 11089158-C-T *
13241659-T-C 11085983-T-C *
13492247-A-T 11336571-A-T *
13244644-T-C 11088968-T-C *
13711877-T-G 11556201-T-G **
13249208-C-A 11093532-C-A *
13249261-C-T 11093585-C-T *
13244809-G-A 11089133-G-A *
13251630-T-C 11095954-T-C *
13244812-G-A 11089136-G-A *
13258252-AC-A 11102576-AC-A *
13241609-G-A 11085933-G-A *
13711875-A-C 11556199-A-C **
28583163-T-C 26437016-T-C *
13241604-T-C 11085928-T-C FGC80883 *
13466720-A-G,T 11311044-A-G,T *
9946053-C-G 10108444-C-G Y*
13492355-A-G 11336679-A-G *
3845140-T-TGC 3977099-T-TGC 11×G*
4342513-A-C 4474472-A-C *
13543165-G-A 11387489-G-A *
13249314-A-G 11093638-A-G *
13495556-T-G 11339880-T-G *
13541199-A-G 11385523-A-G *
13541068-T-C 11385392-T-C *
10669158-C-CATTCTATTCCATTCCACTGA *
56865466-C-A,T *
11005521-T-TC,TGCATGA *
56860827-G-A *
9964373-G-T 10126764-G-T Y*
9965248-CT-C 10127639-CT-C ***
56830983-G-GCTCCA,GCTCTA *
13540842-G-A 11385166-G-A *
13241603-A-G 11085927-A-G *
13249177-T-C 11093501-T-C *
13549796-G-T 11394120-G-T *
13564093-T-C 11408417-T-C *
13556716-T-C 11401040-T-C *
13552590-C-G 11396914-C-G *
13552588-T-C 11396912-T-C *
13552584-G-A 11396908-G-A *
13453668-CATTCCATTCCATTCT-C 11297992-CATTCCATTCCATTCT-C *
13552574-T-C 11396898-T-C *
13480159-G-A,C 11324483-G-A,C *
9936297-C-G 10098688-C-G Y*
13546558-C-A 11390882-C-A *
13543753-A-G 11388077-A-G *
18760242-TTCTC-T,TTC 16648362-TTCTC-T,TTC 27×TC*
13557130-C-T 11401454-C-T *
13538802-C-G 11383126-C-G *
13398025-T-C 11242349-T-C FGC1090 *
13398387-T-A 11242711-T-A *
13444778-A-T 11289102-A-T *
9936300-G-A 10098691-G-A FT90189 Y*
13261588-T-C 11105912-T-C *
13269830-G-T 11114154-G-T *
13263735-C-G 11108059-C-G *
13257282-TATATA-T 11101606-TATATA-T *
56881412-T-C *
56881154-AAAAAC-A,AAAAAGCAAAAC 4×AAAAC*
28585391-A-G 26439244-A-G FGC28076 *
28583137-G-A 26436990-G-A *
22335191-G-A 20173305-G-A DYZ19 ****
13269866-C-A 11114190-C-A *
13315206-G-C 11159530-G-C *
13306738-C-T 11151062-C-T *
13719510-T-C 11563834-T-C ****
9936338-T-A 10098729-T-A Y*
13598385-T-C 11442709-T-C *
13598371-T-G 11442695-T-G *
13291889-T-TGG 11136213-T-TGG *
13564097-A-G 11408421-A-G *
9964180-G-C 10126571-G-C Y*
6403289-A-G 6535248-A-G A18684 *
13506562-A-G 11350886-A-G *
9965080-T-C 10127471-T-C Y*
13538024-T-C 11382348-T-C *
13538021-G-A 11382345-G-A *
28586221-A-G 26440074-A-G CTS12419 *
13444904-A-G 11289228-A-G *
9944214-A-G 10106605-A-G Y*
9944218-C-T 10106609-C-T Y*
9944224-C-A 10106615-C-A Y*
13493046-C-A 11337370-C-A *
9944862-T-C 10107253-T-C Y*
13528693-G-A 11373017-G-A *
13495564-A-G 11339888-A-G *
13543101-G-T 11387425-G-T *
28583212-T-C 26437065-T-C *
28585427-T-G 26439280-T-G *
28585444-G-C 26439297-G-C *
13536848-T-C 11381172-T-C *
13400289-G-A 11244613-G-A *
13513672-G-T 11357996-G-T *
13492320-A-G 11336644-A-G *
13510123-T-G 11354447-T-G *
56861814-A-AAAC *
13510139-A-G 11354463-A-G *
28817910-C-T 26671763-C-T ****
9941736-T-C 10104127-T-C PF371 Y*
14102359-T-TA,TTCTA 11981653-T-TA,TTCTA 9×TCTA*
13716219-A-G 11560543-A-G **
13691368-G-A 11535692-G-A ****
13689738-C-A 11534062-C-A *
13550603-A-G 11394927-A-G *
13408299-G-C 11252623-G-C *
9965055-G-T 10127446-G-T Y*
13532875-CAAAAA-C 11377199-CAAAAA-C 13×A*
13483973-T-C 11328297-T-C *
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22559125-A-G 20397239-A-G ***
13242304-T-G 11086628-T-G ***
22802868-ATTTTTTTTTT-A,AT 20640982-ATTTTTTTTTT-A,AT 32×T*********
22812629-CTTTTTT-C,CTTTTTTT 20650743-CTTTTTT-C,CTTTTTTT 28×T***
13468467-G-A 11312791-G-A ***
13500598-A-G 11344922-A-G A10798 ***
13550668-C-T 11394992-C-T ***
13528106-T-C 11372430-T-C ***
16826477-C-A 14714597-C-A ***
13544730-T-C 11389054-T-C ***
13543347-C-G 11387671-C-G ***
13539269-T-C 11383593-T-C ***
13538934-T-C 11383258-T-C ***
17194245-T-C 15082365-T-C ***
13538931-T-G 11383255-T-G ***
13537967-C-T 11382291-C-T ***
13537778-C-G 11382102-C-G ***
13537747-G-C 11382071-G-C ***
13537129-G-A 11381453-G-A ***
13535098-C-A 11379422-C-A ***
13528097-T-C 11372421-T-C ***
13507703-T-C 11352027-T-C ***
13525669-C-T 11369993-C-T ***
13524664-C-A 11368988-C-A ***
13524322-G-T 11368646-G-T ***
13524270-C-A 11368594-C-A ***
13523219-A-G 11367543-A-G ***
18765032-G-T 16653152-G-T ***
13514251-C-T 11358575-C-T ***
13514207-C-A 11358531-C-A ***
13513895-G-A 11358219-G-A ***
19492941-G-GA 17381061-G-GA ***
19545730-C-A 17433850-C-A ***
13509148-T-A 11353472-T-A ***
13508027-A-G 11352351-A-G FGC77605 ***
10787651-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B204230892914272986817231924
Kit: LZPHV*16000000100000008300000
Kit: X22T4*16000000100000008300000
Kit: B2042301513478094668938357515
Used in age calculations1513478094668938357515
Counts of SNPs6816
Variant counts last updated 2019-11-12 02:42:09.

* BED data not available. Using default values.


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