Tree Position

R-U106/S21 > Z2265 > Z381/S263 > Z301/S499 > L48 > Z9 > Z347 > Z328 > Y6669 > S11136 > Y98727

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
549893
22304620-C-A 20142734-C-A DYZ19 A*
28817780-T-C 26671633-T-C A*
22304621-C-A 20142735-C-A DYZ19 A*
20695600-T-C 18533714-T-C P4_Prx A*
22310776-T-A 20148890-T-A DYZ19 A*
24244187-T-A 22098040-T-A P3_b1 A*
24294378-G-T 22148231-G-T P3_t1 A*
25894402-T-G 23748255-T-G P1_Y1 A*
6868389-A-G 7000348-A-G BY36003 YY+
7236021-C-T 7367980-C-T BY41613 YY+
9083524-A-G 9245915-A-G BY77928 Y+
9812081-A-C 9974472-A-C BY81139 YY+
13238953-G-A 11083277-G-A BY36004 +
14148926-G-T 12028220-G-T BY36005 YY+
14189621-C-T 12068915-C-T BY36006 YY+
14264010-T-A 12143304-T-A BY36007 YY+
14265431-G-A 12144725-G-A BY36008 YY+
14369615-G-C 12248911-G-C BY36009 YY+
15552273-C-T 13440393-C-T BY36010 YY+
17349692-C-T 15237812-C-T BY36011 YY+
17380875-G-A 15268995-G-A BY36012 YY+
17468899-G-A 15357019-G-A BY36013 YY+
18223307-A-G 16111427-A-G BY36014 Y+
19321167-G-A 17209287-G-A YY+
19455126-G-A 17343246-G-A BY129231 YY+
21332262-G-A 19170376-G-A BY36015 YY+
21343523-C-A 19181637-C-A BY132243 YY+
22102272-C-T 19940386-C-T BY36016 YY+
22475772-C-G 20313886-C-G DYZ19 +
21927914-C-CT 19766028-C-CT 10×T*
13680174-G-GTGGAA 11524498-G-GTGGAA *
22433820-C-T 20271934-C-T DYZ19 *
22508577-T-A 20346691-T-A FT460710 DYZ19 *
24600440-T-C 22454293-T-C Z45622 P3_t2 **
17794253-G-GTTCT 15682373-G-GTTCT 10×TTCT**
26594868-G-A 24448721-G-A E24 P1_g2 **
8261193-A-T 8393152-A-T FGC17187L484 M4747 PF7258 **
5491261-C-CA 5623220-C-CA 18×A**
13898759-T-G 11778053-T-G BY49459 **
24600442-C-T 22454295-C-T A20538 P3_t2 18×TCTT**
8153875-G-A 8285834-G-A **
23128486-G-A 20966600-G-A PF1957CTS11475 PF2004 **
14179193-GA-G 12058487-GA-G 10×A**
8181277-G-C 8313236-G-C **
25530322-T-C 23384175-T-C P1_gr1 **
26594833-C-T 24448686-C-T P1_g2 **
22893366-TTTC-T 20731480-TTTC-T **
26594915-C-G 24448768-C-G P1_g2 **
16033403-C-A 13921523-C-A **
10774165-C-A **
10770490-C-A **
22068835-C-A 19906949-C-A **
14673498-G-T 12561564-G-T **
10937830-A-C **
13856311-T-TCAAAAG 11735605-T-TCAAAAG **
13856312-G-GAAAT 11735606-G-GAAAT **
21984232-C-A 19822346-C-A **
56748128-G-A **
56748159-G-C **
19476468-C-A 17364588-C-A **
14575832-C-A 12464032-C-A **
3445476-G-T 3577435-G-T **
15791012-C-A 13679132-C-A **
13550807-C-A 11395131-C-A **
27889323-AC-A 25743176-AC-A P1_Y2 **
10787724-C-T **
10945123-T-C **
10945126-G-C **
10938781-C-A **
10996588-C-A **
10809621-T-C **
10893468-C-T **
13566638-G-T 11410962-G-T **
10880348-A-G **
10982408-T-C **
21127433-T-G 18965547-T-G **
11014534-T-C **
11014539-T-C **
16045037-C-A 13933157-C-A **
10982406-C-G **
10982419-T-A **
10982463-C-T **
10914832-C-T FT262777 **
10964220-TC-T **
10964248-A-G **
28635461-C-A 26489314-C-A **
10656777-G-T **
13485687-C-G 11330011-C-G **
10770612-CCAATA-C **
10036021-C-A 10198412-C-A **
7311647-C-A 7443606-C-A **
10923754-A-C **
10945117-T-C **
10945119-C-T **
28811872-C-A 26665725-C-A **
4757552-C-A 4889511-C-A FT321661 **
14776923-CAAA-C 12664992-CAAA-C 15×A**
10958663-T-G **
10759797-T-TTGCACTACAC **
10759810-C-G **
7123663-C-A 7255622-C-A **
10747970-G-T **
10880354-C-A **
5708606-C-A 5840565-C-A **
21694887-C-A 19533001-C-A **
13196489-C-A 11040813-C-A **
56845111-A-G **
56845121-T-C **
28661686-C-A 26515539-C-A **
4080955-C-A 4212914-C-A **
14871345-C-A 12759415-C-A **
8768591-C-A 8900550-C-A **
17492330-C-A 15380450-C-A **
10945110-C-CTAGTT **
15449883-A-T 13338003-A-T **
10689068-CAATCT-C **
18810979-C-A 16699099-C-A **
8736272-C-A 8868231-C-A **
23512277-G-T 21350391-G-T **
15424328-C-A 13312448-C-A **
16823902-C-A 14712022-C-A **
11018216-T-G **
11018234-ACTCCAC-A **
11018282-C-G **
11018292-C-T **
13417052-C-A 11261376-C-A **
13488758-TC-T 11333082-TC-T **
13488765-C-AG 11333089-C-AG **
13488776-C-G 11333100-C-G **
10747976-C-T **
10914880-C-A **
8673138-C-A 8805097-C-A **
19045010-TAAAA-T 16933130-TAAAA-T 16×A**
9639021-C-A 9801412-C-A IR3_Prx **
10928983-C-A **
17770520-C-A 15658640-C-A **
14584520-C-A 12472720-C-A **
26505532-A-AC 24359385-A-AC P1_Y1 **
15542675-T-A 13430795-T-A FTA28179 **
14456047-G-A 12335320-G-A **
28791340-G-T 26645193-G-T **
10983592-C-G **
11018872-C-A **
28479115-C-A 26332968-C-A **
56870991-C-A **
20824921-C-A 18663035-C-A P4_Gap **
20809515-C-A 18647629-C-A P4_Gap **
10813656-C-A **
10943128-A-T **
13239412-C-A 11083736-C-A **
21426966-C-A 19265080-C-A **
10803726-C-A **
56830220-T-G **
56851482-G-T **
10870402-A-C FT434874 **
18898876-C-A 16786996-C-A **
24875548-C-A 22729401-C-A g1 **
2688788-A-C 2820747-A-C **
3821173-C-A 3953132-C-A **
10782956-C-T **
20842639-C-A 18680753-C-A P4_Dst **
15366114-G-T 13254234-G-T **
19361258-C-A 17249378-C-A **
13859858-T-A 11739152-T-A **
22199484-C-A 20037598-C-A **
6953381-A-C 7085340-A-C **
3990590-T-C 4122549-T-C **
10802824-C-A **
10782952-A-T **
56763490-T-C **
10795051-G-C **
13717490-C-A 11561814-C-A **
17377755-G-T 15265875-G-T **
8153855-T-C 8285814-T-C **
10658263-T-G **
26594905-T-A 24448758-T-A P1_g2 **
25934399-T-TA 23788252-T-TA P1_Y1 **
11033877-A-C **
10937183-C-A **
21969416-C-A 19807530-C-A **
17387461-C-A 15275581-C-A **
17950739-C-A 15838859-C-A **
15684674-GAA-G 13572794-GAA-G 11×A**
11006251-C-A **
13474646-T-C 11318970-T-C **
17584299-C-A 15472419-C-A **
23431345-C-A 21269459-C-A **
2824253-T-G 2956212-T-G FT74264 **
16676677-C-A 14564797-C-A **
22634819-C-A 20472933-C-A **
10914835-G-T **
10914858-T-G **
10914872-G-C **
10914899-T-G **
17886497-C-A 15774617-C-A **
14517790-C-A 12405991-C-A **
28699335-T-G 26553188-T-G **
20865321-G-T 18703435-G-T P4_Dst **
16178643-C-A 14066763-C-A **
13460608-T-C 11304932-T-C **
3410329-C-A 3542288-C-A **
7140455-T-G 7272414-T-G **
56845105-T-C **
10983582-T-C **
13605169-T-G 11449493-T-G **
22420406-T-A 20258520-T-A DYZ19 **
3467144-A-G 3599103-A-G **
28798352-G-T 26652205-G-T **
22128003-C-A 19966117-C-A **
18165591-C-A 16053711-C-A **
14475900-C-A 12355169-C-A **
2689586-T-C 2821545-T-C **
2784557-T-C 2916516-T-C **
2924482-A-G 3056441-A-G **
3104818-C-T 3236777-C-T FTA34427 **
3108578-A-C 3240537-A-C **
3126186-G-T 3258145-G-T **
3251740-T-G 3383699-T-G **
3272779-G-C 3404738-G-C **
3295049-T-C 3427008-T-C **
3574566-CA-C 3706525-CA-C **
3658363-G-C 3790322-G-C **
3821171-C-A 3953130-C-A **
3834585-C-A 3966544-C-A **
3834923-C-A 3966882-C-A **
4305045-T-C 4437004-T-C **
4807004-C-T 4938963-C-T **
5008557-T-G 5140516-T-G **
5017864-G-T 5149823-G-T **
5022149-A-C 5154108-A-C **
5246436-C-A 5378395-C-A **
5246451-G-T 5378410-G-T **
5308832-A-G 5440791-A-G **
5319867-G-T 5451826-G-T **
5350387-G-T 5482346-G-T **
5521610-C-A 5653569-C-A **
5560625-C-A 5692584-C-A **
5792735-G-T 5924694-G-T **
5861657-C-A 5993616-C-A **
5950842-C-T 6082801-C-T **
5979829-G-T 6111788-G-T **
6004217-C-A 6136176-C-A **
6009536-A-C 6141495-A-C **
6062091-C-A 6194050-C-A **
6085333-C-A 6217292-C-A **
6197047-T-C 6329006-T-C IR3_Dst **
6362090-G-T 6494049-G-T **
6368254-C-A 6500213-C-A **
6483098-C-A 6615057-C-A **
6720543-T-A 6852502-T-A **
6892715-T-C 7024674-T-C **
6948346-C-A 7080305-C-A **
7080150-C-A 7212109-C-A **
7105145-C-A 7237104-C-A **
7135101-G-A 7267060-G-A **
7158287-T-G 7290246-T-G **
7188437-G-T 7320396-G-T **
7299100-T-C 7431059-T-C **
7300026-G-T 7431985-G-T **
7412520-C-A 7544479-C-A **
7759290-C-A 7891249-C-A **
8110678-C-A 8242637-C-A **
8153850-C-G 8285809-C-G **
8153851-C-T 8285810-C-T **
8153856-C-T 8285815-C-T **
8153874-C-T 8285833-C-T **
8276216-T-G 8408175-T-G **
8344871-G-T 8476830-G-T **
8389641-C-T 8521600-C-T **
8699076-C-A 8831035-C-A FTA44917 **
8699136-C-A 8831095-C-A **
8737835-G-C 8869794-G-C **
9111568-G-T **
9111581-T-G **
8988710-C-T 9151101-C-T **
9089099-G-A 9251490-G-A **
9233960-T-G 9396351-T-G **
9233971-A-C 9396362-A-C **
9233983-T-G 9396374-T-G **
9233988-T-G 9396379-T-G **
9411059-C-A 9573450-C-A **
9732374-G-T 9894765-G-T IR3_Prx **
9936649-A-G 10099040-A-G **
10026166-C-A 10188557-C-A **
10065212-G-T 10227603-G-T **
10656214-T-G **
10659888-C-A **
10744591-C-A **
10745378-T-G **
10752090-T-C **
10755646-C-A **
10770603-C-T **
10776406-C-A **
10787304-C-A **
10793150-C-A **
10793152-T-A **
10794936-T-G **
10795930-C-CAATAG **
10799687-C-A **
10801312-C-A **
10804005-C-A **
10838987-T-A **
10850692-T-C **
10858523-C-A **
10863724-C-A **
10870397-C-T **
10870423-A-T **
10874674-C-A **
10877762-C-A **
10878150-C-A **
10899516-C-A **
10913600-T-G **
10914857-C-T **
10921483-T-G **
10928805-T-TCTTTA **
10928820-A-T **
10928819-CACCCA-C **
10939014-T-C **
10953622-C-A **
10964241-C-CCCCTT **
10983551-A-G **
10983583-G-A **
10984231-C-G **
10987511-T-G **
10993958-C-A **
11000705-T-A **
11000707-T-A **
11002106-T-G **
11029708-C-A **
11033917-A-G **
13434579-G-C 11278903-G-C **
13460498-G-T 11304822-G-T **
13474746-A-T 11319070-A-T **
13501474-C-A 11345798-C-A **
13505095-G-C 11349419-G-C **
13624712-CT-C 11469036-CT-C **
13859879-G-T 11739173-G-T **
13937465-A-C 11816759-A-C **
14007495-C-A 11886789-C-A **
14242035-A-C 12121329-A-C **
14251608-T-C 12130902-T-C **
14283251-G-A 12162545-G-A **
14386974-C-A 12266270-C-A **
14387802-G-A 12267098-G-A **
14390613-T-G 12269909-T-G **
14390635-T-G 12269931-T-G **
14421146-C-A 12300421-C-A **
12377304-C-A **
14668476-G-A 12556542-G-A **
14673764-C-A 12561830-C-A **
14715737-C-A 12603804-C-A **
14931700-C-A 12819765-C-A **
15669920-A-T 13558040-A-T **
15742222-C-A 13630342-C-A **
15746064-C-T 13634184-C-T **
15749339-C-A 13637459-C-A **
15792770-G-C 13680890-G-C **
15799209-T-G 13687329-T-G **
15864358-C-A 13752478-C-A **
15952705-T-C 13840825-T-C **
16007011-C-A 13895131-C-A **
16316745-C-A 14204865-C-A **
16417453-C-A 14305573-C-A **
16423270-G-T 14311390-G-T **
16425708-T-G 14313828-T-G **
16532761-GT-G 14420881-GT-G **
16713036-C-A 14601156-C-A **
17170319-C-T 15058439-C-T **
17170320-G-A 15058440-G-A **
17170327-A-C 15058447-A-C **
17211276-AT-A 15099396-AT-A **
17211657-T-C 15099777-T-C **
17222894-C-T 15111014-C-T FT420785 **
17440566-C-A 15328686-C-A **
17450226-G-T 15338346-G-T **
17486353-G-A 15374473-G-A **
17567777-C-A 15455897-C-A **
17918769-A-G 15806889-A-G **
18188694-C-A 16076814-C-A **
18190749-CA-C 16078869-CA-C **
18496500-AAAAGTGTG-A 16384620-AAAAGTGTG-A P6_Dst **
18593415-T-C 16481535-T-C FTB73892 **
18626032-G-T 16514152-G-T **
18627531-C-A 16515651-C-A **
18723107-G-T 16611227-G-T **
18736589-A-G 16624709-A-G **
18844140-T-G 16732260-T-G **
18844262-C-A 16732382-C-A **
18874113-A-T 16762233-A-T **
18874257-C-T 16762377-C-T **
19000171-T-G 16888291-T-G **
19053408-A-T 16941528-A-T **
19302370-C-A 17190490-C-A **
19529651-G-A 17417771-G-A **
20278916-A-C 18117030-A-C P5_Dst **
21334872-G-T 19172986-G-T **
21394401-C-T 19232515-C-T **
21540817-A-G 19378931-A-G **
21990982-C-A 19829096-C-A **
22052578-C-A 19890692-C-A **
22420388-CT-C 20258502-CT-C DYZ19 **
22423882-G-A 20261996-G-A DYZ19 **
22505457-G-T 20343571-G-T DYZ19 **
22810725-G-T 20648839-G-T **
22965192-C-T 20803306-C-T **
23505061-A-T 21343175-A-T **
23824938-G-T 21663052-G-T **
23844896-C-T 21683010-C-T **
24376717-G-A 22230570-G-A BY149440 **
24386651-C-A 22240504-C-A **
24729785-G-T 22583638-G-T P3_b2 **
24878637-A-T 22732490-A-T g1 **
27039133-T-A 24892986-T-A P1_r4 **
28479109-C-A 26332962-C-A **
28551409-G-T 26405262-G-T **
28694557-C-A 26548410-C-A **
28698163-C-A 26552016-C-A **
28699356-A-C 26553209-A-C **
28738483-C-A 26592336-C-A **
28818941-TGCAGA-T 26672794-TGCAGA-T **
56748089-AT-A **
56748147-C-G **
56844932-C-G **
56845108-G-C **
56845132-C-T **
56845134-T-G **
56859127-C-A **
56872129-T-C **
9666600-TAA-T 9828991-TAA-T IR3_Prx ***
21074694-GA-G 18912808-GA-G 9×A***
2759435-C-A 2891394-C-A ***
18997418-C-A 16885538-C-A ***
22902108-CAA-C,CAAA 20740222-CAA-C,CAAA 17×A***
7524509-G-GT 7656468-G-GT 9×T***
15385860-CA-C,CAA 13273980-CA-C,CAA 14×A***
2750628-G-T 2882587-G-T ***
19226651-C-A 17114771-C-A ***
19294887-C-A 17183007-C-A ***
17564912-GA-G,GAA 15453032-GA-G,GAA 16×A***
10801682-C-CAATACATT ***
10746933-C-T ***
23090779-C-A 20928893-C-A ***
22524959-C-A 20363073-C-A ***
10694057-C-A ***
21555319-T-C 19393433-T-C ***
17755384-TAAAA-T 15643504-TAAAA-T 17×A***
10969941-C-A ***
7780969-C-A 7912928-C-A ***
7923554-C-A 8055513-C-A ***
9881708-C-A 10044099-C-A ***
10968440-A-T ***
13811114-G-A,T 11690408-G-A,T ***
13894076-C-A 11773370-C-A ***
14246605-C-A 12125899-C-A ***
14283212-C-A 12162506-C-A ***
15816180-C-A 13704300-C-A ***
15951551-C-A 13839671-C-A ***
17283332-C-T 15171452-C-T ***
17897884-T-C 15786004-T-C ***
17940875-C-A 15828995-C-A ***
21167212-C-A 19005326-C-A ***
22845145-C-A 20683259-C-A ***
22934287-GT-G,GTTTT 20772401-GT-G,GTTTT 12×T***
23007517-T-C 20845631-T-C ***
23528541-TA-T 21366655-TA-T 9×A***
21754230-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.