Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > S971 > Z16267 > Z3000/S951 > Z3006 > Z3004 > A7923 > A14077

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B244933
13451455-A-C 11295779-A-C A*
22282901-G-C 20121015-G-C DYZ19 A*
25568105-C-T 23421958-C-T P1_gr1 A*
9966488-G-A 10128879-G-A BY553PF1431 Y+
6852258-C-T 6984217-C-T BY53587 YY+
7462899-G-T 7594858-G-T BY65362 IR1_L +
19279369-T-A 17167489-T-A A12096 YY+
6286978-CACACACA-C 6418937-CACACACA-C IR3_Dst +
9480450-C-T 9642841-C-T BY79742 +
6734962-G-T 6866921-G-T BY60952 YY+
9844252-A-G 10006643-A-G BY81378 YY+
15847850-T-A 13735970-T-A BY104511 YY+
19625295-T-G 17513415-T-G BY211866 P5_Prx +
16552084-G-A 14440204-G-A BY108558 YY+
21075928-T-G 18914042-T-G BY130268 YY+
22237986-G-A 20076100-G-A BY213750 DYZ19 *
13808939-T-TGAATG 11688233-T-TGAATG 5×GAATG*
22440028-G-C 20278142-G-C DYZ19 *
28808653-T-A,C 26662506-T-A,C *
22433757-C-A 20271871-C-A DYZ19 *
10629677-C-A **
10666645-G-T **
10024421-C-A 10186812-C-A **
9531233-T-TGC 9693624-T-TGC IR3_Prx **
10673093-C-A **
10688616-C-A **
10749766-C-A **
9442755-CATTTTATTTTAT-C 9605146-CATTTTATTTTAT-C **
9371487-T-G 9533878-T-G **
10822883-C-A **
10780481-TC-T **
10937932-T-G **
10991167-C-A **
10991004-C-A **
10984079-G-T **
10979190-C-A **
10974103-C-A **
10972593-C-A **
10967478-C-A **
10951829-G-T **
10945308-T-A **
10922421-C-G **
10803503-C-T **
10876841-T-A **
10865023-A-G **
10864986-A-G **
10857868-C-A **
10847524-T-C **
10842291-C-A **
10836084-T-C **
10832353-C-A **
10832113-C-A **
9108993-C-A **
9356601-A-T 9518992-A-T **
7277643-A-G 7409602-A-G **
8774562-T-A 8906521-T-A **
2900867-C-T 3032826-C-T **
5019822-C-A 5151781-C-A **
4565555-G-T 4697514-G-T **
4497584-G-T 4629543-G-T **
3568819-C-A 3700778-C-A **
3491215-C-A 3623174-C-A **
3344168-G-T 3476127-G-T **
2909020-C-A 3040979-C-A **
2649664-G-T 2781623-G-T **
5284029-C-A 5415988-C-A **
21902088-C-A 19740202-C-A **
11031305-C-G **
11003955-C-A **
8737809-C-A 8869768-C-A **
26073059-T-G 23926912-T-G P1_Y1 **
10933355-C-A **
16743194-GA-G 14631314-GA-G 9×A**
9441648-C-A 9604039-C-A **
5050808-T-C 5182767-T-C **
5851529-C-A 5983488-C-A **
8080719-G-A 8212678-G-A **
6975898-T-G 7107857-T-G **
8076196-G-T 8208155-G-T **
7430424-C-A 7562383-C-A **
7330403-C-A 7462362-C-A **
7304662-T-C 7436621-T-C **
11004190-C-A **
7157951-C-A 7289910-C-A **
7111566-A-T 7243525-A-T **
7033305-T-G 7165264-T-G **
6925749-C-T 7057708-C-T **
6005222-C-A 6137181-C-A **
6780780-A-G 6912739-A-G **
6776317-T-C 6908276-T-C **
6523713-C-A 6655672-C-A **
6417180-C-A 6549139-C-A **
6403640-A-C 6535599-A-C **
6403635-C-T 6535594-C-T **
6403633-G-A 6535592-G-A **
6403622-C-T 6535581-C-T **
11003950-A-T **
13429898-A-C 11274222-A-C **
11004319-C-A **
21671878-C-T 19509992-C-T **
22875492-T-C 20713606-T-C **
22749406-C-T 20587520-C-T **
22689870-T-G 20527984-T-G **
22594652-T-C 20432766-T-C **
21964021-C-A 19802135-C-A **
21905306-AC-A 19743420-AC-A **
21702045-CAAA-C 19540159-CAAA-C 10×A**
21584906-A-G 19423020-A-G **
23340621-C-A 21178735-C-A **
21547479-C-G 19385593-C-G **
21242124-C-T 19080238-C-T **
21105573-TCTCCAATTC-T 18943687-TCTCCAATTC-T **
19890009-C-A 17778129-C-A P5_Prx **
19350092-G-T 17238212-G-T **
19268365-G-T 17156485-G-T **
19060179-C-A 16948299-C-A **
19049515-T-G 16937635-T-G **
23184183-A-G 21022297-A-G **
23363225-G-T 21201339-G-T **
19023252-T-G 16911372-T-G **
27495135-C-A 25348988-C-A P1_Y2 **
56678034-G-T **
56678022-T-A **
28763372-A-G 26617225-A-G **
28748668-G-T 26602521-G-T **
28699846-A-C 26553699-A-C **
28699829-T-G 26553682-T-G **
28590564-G-T 26444417-G-T **
28460975-CT-C 26314828-CT-C **
27399192-A-T 25253045-A-T P1_g3 **
23788184-G-T 21626298-G-T **
27399165-G-T 25253018-G-T P1_g3 **
26500519-T-G 24354372-T-G P1_Y1 **
26324289-T-G 24178142-T-G P1_Y1 **
26314846-G-T 24168699-G-T P1_Y1 **
26163645-C-A 24017498-C-A P1_Y1 **
24283370-C-T 22137223-C-T P3_t1 **
24247412-CA-C 22101265-CA-C P3_b1 **
23802389-C-CAA 21640503-C-CAA 15×A**
19030629-G-T 16918749-G-T **
18876782-C-A 16764902-C-A **
11006271-C-A **
14147977-C-A 12027271-C-A **
14912102-C-A 12800169-C-A **
14901410-C-CA 12789477-C-CA **
14823358-C-T 12711425-C-T **
14688804-G-T 12576870-G-T **
14553242-T-G 12441443-T-G **
14401857-T-C 12281154-T-C **
14348143-C-A 12227438-C-A **
14242056-T-A 12121350-T-A **
13895855-T-G 11775149-T-G **
15287167-T-G 13175266-T-G **
13803248-G-T 11682542-G-T **
13526264-C-A 11370588-C-A BY210425 **
13468190-A-G 11312514-A-G **
13460611-C-A 11304935-C-A **
15365213-C-A 13253333-C-A **
13361374-C-A 11205698-C-A **
13329111-G-A 11173435-G-A **
13267780-T-CCCCCC 11112104-T-CCCCCC **
15283860-C-T 13171959-C-T **
15288613-G-A 13176712-G-A **
18692724-T-C 16580844-T-C **
16829396-C-A 14717516-C-A **
18554422-T-G 16442542-T-G **
18057849-T-G 15945969-T-G **
17920856-G-T 15808976-G-T **
17863456-T-G 15751576-T-G **
17795493-C-T 15683613-C-T **
17518568-G-A 15406688-G-A **
17297071-C-A 15185191-C-A **
16994163-A-T 14882283-A-T **
16648393-C-A 14536513-C-A **
15412413-T-C 13300533-T-C **
16568243-C-A 14456363-C-A **
16070112-A-G 13958232-A-G **
16070107-G-C 13958227-G-C **
15665713-C-A 13553833-C-A **
15635925-A-C 13524045-A-C **
15503230-C-A 13391350-C-A **
15430652-A-G 13318772-A-G **
15412421-T-G 13300541-T-G **
7474440-G-C 7606399-G-C IR1_L **
3257067-AT-A 3389026-AT-A 10×T**
14932042-C-A 12820107-C-A **
13705036-T-A 11549360-T-A **
10645913-G-GTTGATGCCACTCCAC **
10792264-T-C **
13213951-C-A 11058275-C-A **
26505531-A-AC 24359384-A-AC P1_Y1 **
10989925-A-C **
10774769-G-C **
9571871-TG-T 9734262-TG-T IR3_Prx **
26544584-C-A 24398437-C-A P1_g2 **
10912920-A-G **
7134025-C-A 7265984-C-A **
10690730-C-A **
8600009-CTT-C 8731968-CTT-C 13×T**
10645913-G-C **
18365651-G-T 16253771-G-T P6_Prx **
10899207-C-T **
2740501-G-T 2872460-G-T **
11003972-T-C **
23802412-G-T 21640526-G-T **
11003979-C-T **
17920859-G-T 15808979-G-T **
10989894-A-T **
19139029-C-A 17027149-C-A **
14901400-C-A 12789467-C-A **
17760481-T-C 15648601-T-C **
7311958-C-A 7443917-C-A **
13360965-C-A 11205289-C-A **
22001915-C-A 19840029-C-A **
10781235-G-C **
10781232-C-G **
10781210-GT-G **
11024774-G-A **
10774770-G-A **
11024765-CG-C **
11036032-C-T **
10774728-C-G **
10995645-C-A **
10876845-G-C **
10925679-C-T **
10760004-C-G **
22768846-G-T 20606960-G-T **
9109021-C-G **
10956054-A-C **
10884156-G-T **
10945292-G-A **
17524166-T-TA 15412286-T-TA 10×A**
11024684-A-G **
11024682-T-C **
11024677-C-T **
11024654-A-T **
11024652-C-G **
27521926-C-A 25375779-C-A P1_Y2 **
10774725-T-A **
10627772-CATTTCAATCG-C **
58994878-T-A 56848731-T-A **
11024699-A-C **
15322485-G-C 13210603-G-C **
4207957-CAAA-C 4339916-CAAA-C 22×A**
58855274-A-G 56735597-T-C **
19966548-AAAG-A 17854668-AAAG-A P5_Prx 6×AAG**
18036076-AT-A 15924196-AT-A 10×T**
16250624-G-T 14138744-G-T BY1237 Y199 28×T**
13936114-C-A 11815408-C-A **
3363357-T-G 3495316-T-G **
11024698-C-T **
6776326-T-G 6908285-T-G **
10925661-T-C **
25733053-G-T 23586906-G-T P1_b3 **
10685806-C-A **
10685801-C-G **
10685794-T-A **
10685766-C-T **
22811009-A-G 20649123-A-G **
22811008-C-T 20649122-C-T **
10937806-A-G **
7263678-C-A 7395637-C-A **
10866358-G-A **
10925672-C-T **
18328815-C-A 16216935-C-A P6_Prx **
14531952-C-A 12420153-C-A **
11024756-G-C **
11024751-T-G **
11024733-A-T **
11024731-C-A **
11024726-C-A **
11024716-T-C **
28793802-T-G 26647655-T-G **
19449242-C-A 17337362-C-A **
10759383-C-T **
4540411-C-A 4672370-C-A **
28561828-C-A 26415681-C-A **
25990664-C-A 23844517-C-A P1_Y1 **
22783149-C-A 20621263-C-A **
25733034-G-GTT 23586887-G-GTT P1_b3 17×T**
10956055-A-C **
17402302-C-A 15290422-C-A **
5560555-C-A 5692514-C-A **
6780764-G-A 6912723-G-A **
18197754-C-A 16085874-C-A **
10956030-A-T **
11029722-C-T **
10945285-C-G **
9374717-G-A 9537108-G-A **
27971761-A-C 25825614-A-C P1_Y2 **
16015556-C-A 13903676-C-A **
10658994-C-A **
13460616-C-T 11304940-C-T **
15412420-G-A 13300540-G-A **
9108920-C-A **
10781276-TTCTATTCTA-T **
16789733-A-C 14677853-A-C **
10927746-C-A **
10956006-A-G **
10783683-C-A **
20473626-GAT-G 18311740-GAT-G P5_Dst **
5796829-C-A 5928788-C-A **
15322486-G-A 13210604-G-A **
13488957-G-GGT 11333281-G-GGT **
8854130-C-A 8986089-C-A **
10956057-T-C **
10956036-A-G **
14445023-C-A 12324296-C-A **
16932228-C-A 14820348-C-A **
10973915-T-G **
6374183-G-T 6506142-G-T **
8479572-T-G 8611531-T-G **
10760013-T-G **
10759988-T-G **
17283514-C-A 15171634-C-A **
13488961-CCA-C 11333285-CCA-C **
10760459-A-C **
21880872-C-A 19718986-C-A **
15937382-C-A 13825502-C-A **
56861668-A-G **
28793002-G-T 26646855-G-T **
10925676-T-A **
10629652-C-A **
22768852-G-T 20606966-G-T **
7160894-C-CTTT 7292853-C-CTTT 16×T**
11019184-C-A **
28767815-C-A 26621668-C-A **
10629650-T-A **
13725934-G-T 11570258-G-T **
17993905-T-G 15882025-T-G P7_Prx **
16990321-C-A 14878441-C-A **
23833042-C-A 21671156-C-A **
10629646-C-G **
10629633-A-T **
19706154-C-A 17594274-C-A P5_Prx **
10629643-A-T **
21253852-G-T 19091966-G-T **
11029702-G-T **
10989916-CACTCT-C **
10925424-C-A **
10781270-A-T **
23734274-C-A 21572388-C-A ***
56707232-TG-T ***
22867086-C-A 20705200-C-A ***
10678551-TCCAAA-T,TCCATC ***
23090785-TA-T 20928899-TA-T ***
2773691-TAAAAA-T 2905650-TAAAAA-T 19×A***
5292380-C-A 5424339-C-A ***
13801461-A-G 11680755-A-G ***
13643079-T-G 11487403-T-G ***
23380570-CA-C,CAA 21218684-CA-C,CAA 13×A***
7704947-C-A 7836906-C-A ***
10792788-C-A ***
11006808-T-G ***
9451191-C-A 9613582-C-A ***
4703483-C-A 4835442-C-A ***
10947623-ATTCTA-A,ATTCT ***
22797822-G-T 20635936-G-T ***
10860024-T-TCCACC ***
6752767-C-A 6884726-C-A ***
5967761-C-A 6099720-C-A ***
10999859-G-A,T ***
11005108-G-T ***
10970980-C-A ***
22814050-A-G 20652164-A-G ***
16520753-G-T 14408873-G-T ***
5967765-T-C 6099724-T-C ***
18959214-CAAAAA-C,CAAA 16847334-CAAAAA-C,CAAA 27×A***
10961405-A-C,G ***
16263289-C-A 14151409-C-A ***
17633852-CA-C,CAA 15521972-CA-C,CAA 13×A***
17170167-CTTT-C,CT 15058287-CTTT-C,CT 21×T***
15947713-C-A 13835833-C-A ***
17648009-C-CAA 15536129-C-CAA 17×A***
8270632-G-T 8402591-G-T ***
5911765-C-A 6043724-C-A ***
22729245-GA-G,GAA 20567359-GA-G,GAA 13×A***
7645735-A-G 7777694-A-G ***
18392968-C-A 16281088-C-A P6_Gap ***
15969956-TAAA-T,TAAAA 13858076-TAAA-T,TAAAA 20×A***
16286530-C-A 14174650-C-A ***
18697441-C-CT 16585561-C-CT 9×T***
22645800-TTTA-T 20483914-TTTA-T 5×TTA***
13453371-T-A 11297695-T-A ***
18997578-C-A 16885698-C-A ***
7532320-AT-A 7664279-AT-A ***
19289564-ATTCAGTAATATATAAAAT-A 17177684-ATTCAGTAATATATAAAAT-A ***
10880994-A-T ***
10792461-C-A ***
10809010-G-C ***
15400428-C-A 13288548-C-A ***
21824945-T-C 19663059-T-C ***
21824946-G-A 19663060-G-A ***
13453372-T-A 11297696-T-A ***
9457335-C-A 9619726-C-A ***
10843817-C-A ***
13810138-C-A 11689432-C-A ***
10792451-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B244933929850075423187454097
Used in age calculations929850075423187454097
Counts of SNPs87
Variant counts last updated 2019-03-05 01:03:49.



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