Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S764 > Y16252 > BY23333

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
235419
13838926-G-GAATGA 11718220-G-GAATGA A*
13838926-G-C 11718220-G-C A*
7610550-C-A 7742509-C-A YYA*
26411990-G-GA 24265843-G-GA P1_Y1 10×AA*
17947965-C-T 15836085-C-T YY+
14491671-T-C 12379868-T-C BY5692 FGC51812P41 M359 A17722 YY+
17166605-G-C 15054725-G-C BY112747 YY+
23796594-G-A 21634708-G-A Y+
22316158-A-G 20154272-A-G BY217202 DYZ19 *
15558491-TAGATAGATAGAC-T,TAGATAGATAGAT 13446611-TAGATAGATAGAC-T,TAGATAGATAGAT *
13458637-GTTCCATTCCA-G 11302961-GTTCCATTCCA-G 9×TTCCA*
5817862-A-G 5949821-A-G **
5845288-C-A 5977247-C-A **
5796737-T-G 5928696-T-G **
5758453-G-T 5890412-G-T **
5443718-A-T 5575677-A-T **
5847972-G-T 5979931-G-T **
5859282-C-A 5991241-C-A **
5875806-G-T 6007765-G-T **
28784471-GAATGC-G 26638324-GAATGC-G **
4350112-G-T 4482071-G-T **
5349119-C-A 5481078-C-A **
5084644-T-C 5216603-T-C **
4386628-C-A 4518587-C-A **
4284891-A-G 4416850-A-G **
4274869-A-C 4406828-A-C **
4244875-G-T 4376834-G-T **
4195340-T-G 4327299-T-G **
4112284-C-A 4244243-C-A **
3291798-G-T 3423757-G-T **
3203474-G-T 3335433-G-T **
3203336-G-A 3335295-G-A **
3033611-G-T 3165570-G-T **
10820796-C-CACAAT **
10858458-C-T **
5918249-G-T 6050208-G-T **
6401645-T-A 6533604-T-A **
6089388-G-T 6221347-G-T **
10629703-A-G **
10756299-T-G **
10751046-T-G **
10751028-C-CGAGTA **
10751024-C-CTAG **
10751023-C-CA **
10751020-A-AG **
10693358-C-A **
10685768-AT-A **
10673070-TGAAATCCCAA-C **
10665264-T-G **
10657618-A-C **
9929748-GC-G 10092139-GC-G **
6172305-G-T 6304264-G-T IR3_Dst **
9768795-C-A 9931186-C-A **
9606421-C-T 9768812-C-T IR3_Prx **
9153538-C-A 9315929-C-A **
9015552-C-A 9177943-C-A **
9123444-T-C **
8732274-G-T 8864233-G-T **
7975880-C-A 8107839-C-A **
7375393-G-T 7507352-G-T **
7210670-C-A 7342629-C-A **
6818937-G-T 6950896-G-T **
6784599-A-T 6916558-A-T **
10772779-G-T **
10801473-A-G **
10823628-G-T **
3127012-G-T 3258971-G-T **
23498080-ATTT-A 21336194-ATTT-A 19×T**
10896387-G-A **
28510525-C-A 26364378-C-A **
19414999-C-A 17303119-C-A **
10979164-C-T **
10979160-T-C **
10979138-C-T **
10979137-A-G **
10979128-A-C **
10979126-T-C **
10979066-T-C **
17934203-T-TAA 15822323-T-TAA 13×A**
10981337-C-A **
11676401-G-C **
11009255-A-T **
10778516-G-T **
7311598-C-A 7443557-C-A **
13487501-C-A 11331825-C-A **
21146350-T-C 18984464-T-C **
28808596-C-A 26662449-C-A **
17713886-C-A 15602006-C-A **
10751043-C-G **
13486836-G-A 11331160-G-A **
9943486-C-A 10105877-C-A **
13282298-C-A 11126622-C-A **
13859680-C-A 11738974-C-A **
18754846-C-A 16642966-C-A **
7448625-G-T 7580584-G-T IR1_L **
17406765-C-A 15294885-C-A **
10848913-A-T **
11007479-A-T **
22075758-C-A 19913872-C-A **
10804375-G-A **
21079052-TAC-T 18917166-TAC-T **
7852387-C-A 7984346-C-A **
10982638-CTCCAT-C **
28808639-G-C 26662492-G-C **
10954751-C-A **
10973638-G-C **
10991447-C-CCA **
17741199-A-C 15629319-A-C **
11009046-C-T **
10756852-T-C **
23848665-C-A 21686779-C-A **
16424546-G-T 14312666-G-T **
5041546-C-A 5173505-C-A **
13587846-G-T 11432170-G-T **
20516384-G-T 18354498-G-T P5_Dst **
11037789-G-T **
19138937-A-C 17027057-A-C **
4243732-C-A 4375691-C-A **
18009644-GA-G 15897764-GA-G P7_Dst 8×A**
14294339-C-A 12173633-C-A Y90963 **
14959561-C-A 12847636-C-A **
10782996-G-C **
10814297-T-A **
10804384-T-C **
15620430-C-A 13508550-C-A **
17085867-GCA-G 14973987-GCA-G **
16931414-C-A 14819534-C-A **
16860804-G-T 14748924-G-T **
16708494-A-T 14596614-A-T **
16549601-C-A 14437721-C-A **
16536193-C-A 14424313-C-A 8×T**
16520664-G-T 14408784-G-T **
16515835-C-A 14403955-C-A **
16210982-T-G 14099102-T-G **
16186675-A-G 14074795-A-G **
15750502-CTTTTTT-C 13638622-CTTTTTT-C 18×T**
15604209-C-A 13492329-C-A **
17675559-A-C 15563679-A-C **
15573571-C-A 13461691-C-A **
15536252-C-A 13424372-C-A **
15412856-T-C 13300976-T-C **
15380331-T-A 13268451-T-A **
15312826-A-G 13200931-A-G **
15083444-G-T 12971534-G-T **
14919386-C-T 12807451-C-T **
14769365-T-C 12657434-T-C **
14743945-G-A 12632014-G-A **
14530596-A-T 12418797-A-T **
12373862-C-A **
17085872-T-TAA 14973992-T-TAA **
18206769-C-T 16094889-C-T **
14369150-C-A 12248446-C-A **
23337642-C-A 21175756-C-A **
28808643-T-C 26662496-T-C **
28760781-T-A 26614634-T-A **
28690750-A-C 26544603-A-C **
28099588-C-A 25953441-C-A P1_Y2 **
27810324-G-T 25664177-G-T P1_Y2 **
27762781-A-AG 25616634-A-AG P1_Y2 **
26427384-G-A 24281237-G-A P1_Y1 **
24430244-T-C 22284097-T-C **
24421778-C-A 22275631-C-A **
24407201-C-G 22261054-C-G **
23952997-G-T 21806850-G-T **
22935210-C-A 20773324-C-A **
18825478-A-C 16713598-A-C **
22837112-C-A 20675226-C-A **
22810690-A-C 20648804-A-C **
22564934-A-G 20403048-A-G **
22237694-A-C 20075808-A-C DYZ19 **
22114788-A-T 19952902-A-T **
22040895-A-C 19879009-A-C **
21985240-A-T 19823354-A-T **
21746690-T-C 19584804-T-C **
21714771-A-AC 19552885-A-AC **
21699218-A-T 19537332-A-T **
21464834-C-A 19302948-C-A **
19155449-T-C 17043569-T-C **
14486018-G-A 12365287-G-A **
14324397-T-A 12203691-T-A **
10804389-CTTTCT-C **
10903273-G-T **
10984936-T-G **
10964451-G-T **
10947027-T-G **
10946735-A-T **
10940858-C-A **
10937781-G-C **
10937753-T-A **
10937728-T-A **
10937265-T-C **
10922130-C-A **
10914290-T-G **
10896395-C-T **
10988689-T-C **
10896361-T-G **
10896346-TC-T **
10896341-T-G **
10896310-T-C **
10893628-C-A **
10878429-C-A **
10875043-T-C **
10845501-C-A **
10822746-C-A **
11026959-C-A **
10804430-A-ATTTCT **
10804414-C-T **
10987366-G-T **
10988692-T-A **
14235310-A-T 12114604-A-T **
13600909-T-G 11445233-T-G **
14128223-C-A 12007517-C-A **
14065684-C-A 11944978-C-A **
11676431-A-T **
11676425-C-T **
11676417-A-AAACAAAACGG **
11676410-T-A **
11676402-G-A **
11676396-G-T **
11676395-T-G **
11665183-T-G **
13716506-T-A 11560830-T-A **
13543518-C-A 11387842-C-A **
10991714-C-T **
13510588-C-A 11354912-C-A **
13486876-A-T 11331200-A-T **
13428479-C-A 11272803-C-A **
13242454-G-T 11086778-G-T **
13219005-T-A 11063329-T-A **
11022371-A-C **
11020089-TCCTTA-T **
11014837-C-T **
11007477-C-G **
11007464-A-T **
11007452-C-G **
10995769-C-G **
13610985-C-A 11455309-C-A **
56840312-A-C **
5852050-C-A 5984009-C-A **
13218986-AAG-A 11063310-AAG-A **
10944494-C-A **
10820806-G-T **
15963966-T-G 13852086-T-G **
10852722-T-A **
14054067-C-A 11933361-C-A **
9929705-T-G 10092096-T-G **
18961622-C-A 16849742-C-A **
11662238-G-T **
10937750-T-C **
10937735-T-C **
10991456-C-T **
10909675-G-T **
23282347-C-A 21120461-C-A **
10830932-A-C **
10830931-A-C **
11675385-T-C **
11675379-A-G **
11675375-T-C **
10684196-T-C **
10684259-T-G **
18738114-C-CTT 16626234-C-CTT 19×T**
10877695-C-A **
7382317-CAAACA-C 7514276-CAAACA-C 5×AAACA**
10744262-C-T **
10744257-CAT-C **
11022069-CT-C **
10969518-C-A **
11007453-T-C **
4244868-C-A 4376827-C-A **
10688509-T-C **
10983597-T-A **
10764447-G-A **
10991471-T-G **
10991432-C-G **
15452581-C-A 13340701-C-A **
2928505-C-A 3060464-C-A **
10930625-C-A **
19110049-C-A 16998169-C-A **
10820415-A-ATTCCAC **
10991452-T-C **
2766688-AT-A 2898647-AT-A 9×T**
24600670-CAAAA-C 22454523-CAAAA-C P3_t2 16×A**
10930228-T-A **
10841056-C-A **
10841042-C-T **
4757367-C-A 4889326-C-A **
10764453-A-T **
10858435-C-T **
21146275-CTTTTT-C 18984389-CTTTTT-C 17×T**
11020315-C-A **
10841030-T-A **
11026978-C-A **
11037341-CCTCCA-C **
13457766-C-A 11302090-C-A **
11018742-C-A **
10744256-C-CT **
11007435-C-T **
10962929-A-T **
10877696-C-T **
10683169-T-A **
10683164-C-A **
10683153-A-T **
10683152-C-T **
10924943-G-T **
11033930-C-T **
11033903-T-A **
10683075-C-A **
10683070-C-T **
10683064-A-T **
10683063-A-C **
28808637-A-C 26662490-A-C **
10691077-CAACTG-C **
10979105-T-C **
10921118-C-T **
10759794-C-G **
10684286-T-C **
13196436-C-T 11040760-C-T **
13486871-G-C 11331195-G-C **
16868631-GTA-G 14756751-GTA-G **
8911986-G-T 9043945-G-T **
13714389-T-A 11558713-T-A **
13555254-T-TA 11399578-T-TA 11×A**
58987950-C-A 56841803-C-A **
18537493-G-A 16425613-G-A F2764 P6_Dst **
13474641-T-A 11318965-T-A **
10979081-T-C **
10979113-C-T **
10988685-G-C **
10799467-G-T **
17576140-C-A 15464260-C-A **
4936903-C-A 5068862-C-A **
23345871-C-A 21183985-C-A **
10852721-C-T **
10806375-T-A **
13855540-GGAA-G 11734834-GGAA-G **
11009074-C-A **
56879950-T-G **
10987113-AT-A **
16860773-AG-T 14748893-AG-T **
14784737-A-T 12672807-A-T **
28808644-G-A 26662497-G-A **
13474524-G-A 11318848-G-A **
14561760-A-. 12449961-G-A **
22645716-C-A 20483830-C-A **
15281048-C-A 13169147-C-A **
10934748-T-C **
10820764-A-C **
10820761-C-T **
10820760-A-G **
10820756-T-G **
10820751-T-C **
10820750-T-A **
10947030-C-A **
6461064-C-A 6593023-C-A **
23435704-G-T 21273818-G-T **
10962922-C-G **
10791212-T-TTTCCA **
10962943-C-T **
11659935-C-A **
6874597-C-A 7006556-C-A **
10877705-C-T **
10877689-A-C **
10877687-C-T **
10877680-T-C **
10877676-T-C **
10877660-T-G **
10991458-C-A **
10991450-C-CAAT **
15445534-C-A 13333654-C-A **
17367770-C-A 15255890-C-A **
10685646-C-A **
23277076-A-AT 21115190-A-AT 9×T**
10804423-T-A **
17058598-G-T 14946718-G-T **
14486006-ATTTTT-A 12365275-ATTTTT-A 10×T**
10971167-C-G **
2791544-G-T 2923503-G-T **
10682783-G-C **
9944037-G-T 10106428-G-T **
10937720-C-A **
10677678-G-T **
26345797-G-A 24199650-G-A P1_Y1 **
19476651-C-A 17364771-C-A **
10759789-C-T **
22011909-C-A 19850023-C-A **
11022602-C-A **
21946459-G-T 19784573-G-T **
19304181-C-A 17192301-C-A **
10804451-T-C **
10804373-A-C **
10930244-A-C **
11018170-C-A **
10941436-C-A **
10781181-C-A **
23837164-C-A 21675278-C-A **
4171954-C-A 4303913-C-A **
10981021-C-A **
16868597-C-A 14756717-C-A **
18925701-C-CTT 16813821-C-CTT 10×T**
8855299-C-A 8987258-C-A **
10937771-A-G **
18906278-C-A 16794398-C-A **
10684191-C-A **
10839959-T-A **
22167276-C-A 20005390-C-A **
15366114-G-T 13254234-G-T **
10818314-C-A **
10657575-CACTTCACTGT-C **
10657556-A-T **
22655161-C-A 20493275-C-A **
56842272-T-C **
16720569-CT-C 14608689-CT-C **
11022609-C-T **
5698838-G-T 5830797-G-T **
6213875-C-A 6345834-C-A IR3_Dst **
10806351-A-C **
10799727-T-G **
10979072-A-T **
10872273-T-C **
11007440-C-T **
7252392-C-CA 7384351-C-CA **
56842269-G-T **
10806398-G-C **
10806388-A-C **
10806347-T-G **
7756860-C-A 7888819-C-A **
28761235-T-G 26615088-T-G **
10764461-C-T **
10877702-G-C **
8679515-C-A 8811474-C-A **
15447073-C-A 13335193-C-A **
10872315-C-G **
10872291-C-A **
15276398-C-A 13164487-C-A **
13923168-T-TA 11802462-T-TA 8×A**
10922104-T-A **
21629549-T-C 19467663-T-C **
3229513-C-A 3361472-C-A **
17449251-C-A 15337371-C-A **
10983642-C-T **
10945211-CACTCA-C **
10850479-C-A **
10962948-C-A **
10983658-G-C **
15992239-C-A 13880359-C-A **
10799779-C-A **
21105478-C-A 18943592-C-A **
10961321-T-C **
13720532-C-A 11564856-C-A **
15433520-C-A 13321640-C-A **
56842321-C-A **
56835914-CACTCA-C,CACGCA ***
10673047-A-C ***
22130364-C-A 19968478-C-A ***
14900644-ATTTTT-A 12788711-ATTTTT-A 27×T***
16597591-C-A 14485711-C-A ***
21884831-C-A 19722945-C-A ***
28777897-C-A 26631750-C-A ***
10682533-A-T ***
22617250-C-A 20455364-C-A ***
19565634-TAAA-T 17453754-TAAA-T 14×A***
10758382-G-T ***
13811174-CAA-C,GAA 11690468-CAA-C,GAA 5×AATGG***
23054314-C-A 20892428-C-A ***
23068467-A-AT 20906581-A-AT ***
10756886-A-G ***
13869178-T-A 11748472-T-A ***
10020588-A-G 10182979-A-G ***
23397280-C-A 21235394-C-A ***
8426377-GCTTCTT-G,GCTT 8558336-GCTTCTT-G,GCTT 22×CTT***
21039096-CA-C 18877210-CA-C 10×A***
9792063-G-GA 9954454-G-GA BY15969 9×A***
23062148-C-A 20900262-C-A ***
17557167-CT-C,CTT 15445287-CT-C,CTT 12×T***
13486854-G-T 11331178-G-T ***
13486860-C-T 11331184-C-T ***
13486835-T-C 11331159-T-C ***
10776583-C-T ***
21196413-T-C 19034527-T-C ***
3621724-G-T 3753683-G-T ***
16948363-CTTT-C,CTT 14836483-CTTT-C,CTT 14×T***
15365878-G-T 13253998-G-T ***
16519316-CAAA-C,CAA 14407436-CAAA-C,CAA 15×A***
13989193-G-A 11868487-G-A ***
10763115-C-A,T ***
6425756-C-A 6557715-C-A ***
10673049-A-ACT ***
10847054-A-AGTCCC ***
13456502-C-A 11300826-C-A ***
10961000-G-A ***
6780870-CAAAAA-C 6912829-CAAAAA-C 26×A***
21508311-C-A 19346425-C-A ***
6957150-C-A 7089109-C-A ***
7868235-T-A 8000194-T-A ***
21464714-C-A 19302828-C-A ***
21295290-GA-G 19133404-GA-G ***
21189668-CAAAAAA-C,CAAAAA 19027782-CAAAAAA-C,CAAAAA 23×A***
18987013-C-A 16875133-C-A ***
4241728-C-A 4373687-C-A ***
21469243-CTT-C 19307357-CTT-C 13×T***
11018912-C-A ***
2798710-ATT-A,ATTT 2930669-ATT-A,ATTT 20×T***
17462460-C-A 15350580-C-A ***
56833346-C-T ***
2752415-TAAA-T,TAA 2884374-TAAA-T,TAA 23×A***
6395601-C-A 6527560-C-A ***
16829491-C-G 14717611-C-G ***
21992963-TAAA-T,TAA 19831077-TAAA-T,TAA 23×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 235419925208775687447486675
Used in age calculations925208775687447486675
Counts of SNPs45
Variant counts last updated 2019-10-11 02:51:38.



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