Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z367/S255 > Z34/S368 > Z33/S212 > BY164497 > BY34139

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
210273
19688823-G-A 17576943-G-A P5_Prx A*
18279884-A-G 16168004-A-G P6_Prx A*
22313863-T-C 20151977-T-C DYZ19 A*
19928097-G-T 17816217-G-T P5_Prx A*
13694979-A-T 11539303-A-T A*
13478477-A-T 11322801-A-T A*
26224807-T-A 24078660-T-A P1_Y1 9×TAA*
28816805-G-A 26670658-G-A A*
14084238-A-G 11963532-A-G BY92884 YY+
23187265-C-G 21025379-C-G BY143646 Y+
8490688-G-C 8622647-G-C BY73340 YY+
22612406-T-C 20450520-T-C BY139520 YY+
22584110-C-T 20422224-C-T BY139296 YY+
9050208-C-T 9212599-C-T BY77701 Y+
7909892-C-T 8041851-C-T BY68673 YY+
7681685-C-G 7813644-C-G BY66832 YY+
21392243-G-T 19230357-G-T BY132553 YY+
7646365-A-G 7778324-A-G BY66513 YY+
7324933-C-A 7456892-C-A BY155928 YY+
22906755-C-T 20744869-C-T BY141602 YY+
8619145-G-A 8751104-G-A F1354 br1 YY+
9387857-TCT-C 9550248-TCT-C +
19492434-A-G 17380554-A-G BY129521 Y+
15660136-A-T 13548256-A-T BY103162 YY+
19381493-TC-T 17269613-TC-T +
15669565-C-T 13557685-C-T BY103253 Y+
19163482-T-A 17051602-T-A BY126859 YY+
19090976-T-C 16979096-T-C BY126167 YY+
18807905-G-T 16696025-G-T BY123994 YY+
16488409-T-G 14376529-T-G BY108165 YY+
16655378-G-T 14543498-G-T BY109262 YY+
16744724-C-T 14632844-C-T BY109746 YY+
18257926-A-C 16146046-A-C BY121253 +
16934767-C-A 14822887-C-A BY111222 YY+
17728841-C-G 15616961-C-G BY116954 YY+
24008248-TGTGCTGGA-T 21862101-TGTGCTGGA-T +
22145624-A-G 19983738-A-G FGC963 YY+
13841698-T-A 11720992-T-A BY91140 +
28463018-C-G 26316871-C-G BY150555 +
9985809-G-A 10148200-G-A BY82507 Y+
21572673-C-T 19410787-C-T Z38171 YY+
9877555-T-C 10039946-T-C BY53950 YY+
9741742-G-A 9904133-G-A BY80686 IR3_Prx +
13834736-G-T 11714030-G-T BY90970 +
18804946-TAT-T,TAC 16693066-TAT-T,TAC *
16274237-G-T 14162357-G-T **
10979130-C-A **
15918374-G-A 13806494-G-A **
15905023-C-A 13793143-C-A **
10979522-C-A **
15742946-C-A 13631066-C-A **
10991616-A-T **
10983263-TACGAA-T **
16422710-C-A 14310830-C-A **
15688393-T-C 13576513-T-C **
10991182-T-G **
10991608-A-T **
15450275-C-A 13338395-C-A **
16421564-C-A 14309684-C-A **
16465862-C-A 14353982-C-A **
16439926-G-T 14328046-G-T **
10917702-G-T **
10893455-C-A **
17217454-C-A 15105574-C-A **
17154881-T-A 15043001-T-A **
17128501-CAAAAAGT-C 15016621-CAAAAAGT-C **
17115054-C-A 15003174-C-A **
16992233-C-A 14880353-C-A **
10918987-A-T **
16450521-C-A 14338641-C-A **
16868482-G-T 14756602-G-T BY167411 **
10962593-CCACA-C **
10964964-T-C **
16612474-G-A 14500594-G-A **
16506203-T-A 14394323-T-A **
10972896-T-C **
15411306-TACA-T 13299426-TACA-T **
15423404-G-A 13311524-G-A **
15321326-GTGT-G 13209444-GTGT-G **
10991627-T-A **
13604398-A-C 11448722-A-C **
13227811-A-T 11072135-A-T **
14183418-A-C 12062712-A-C **
13254516-C-A 11098840-C-A **
13468041-G-C 11312365-G-C **
14180948-G-C 12060242-G-C **
13477590-A-G 11321914-A-G **
11654823-C-A **
17667254-TGTATGTGTAAA-T 15555374-TGTATGTGTAAA-T **
14078785-C-A 11958079-C-A **
14011260-G-T 11890554-G-T FT168359 **
13999206-C-A 11878500-C-A **
11672524-A-C **
13911397-C-A 11790691-C-A **
13888599-G-T 11767893-G-T **
13859009-G-T 11738303-G-T **
11028238-T-G **
14232469-C-A 12111763-C-A **
15411296-G-T 13299416-G-T **
11016293-T-C **
13854364-T-C 11733658-T-C **
15310972-A-T 13199077-A-T **
15299763-C-G 13187862-C-G **
15299757-C-A 13187856-C-A **
15116741-G-T 13004828-G-T **
11010539-C-T **
14799822-A-C 12687893-A-C **
14799792-G-T 12687863-G-T **
11027272-A-C **
14751637-T-G 12639706-T-G **
14743633-C-A 12631702-C-A **
14573075-A-G 12461275-A-G **
14422549-C-A 12301824-C-A **
14404870-A-C 12284167-A-C **
11019603-T-G **
11024573-C-A **
17466586-G-T 15354706-G-T **
9712926-GA-G 9875317-GA-G IR3_Prx 10×A**
17685713-A-G 15573833-A-G **
24259227-G-T 22113080-G-T P3_b1 **
25571900-T-C 23425753-T-C P1_gr1 **
25466545-A-C 23320398-A-C P2_r2 **
25096417-G-T 22950270-G-T g1 **
24405139-A-G 22258992-A-G **
24280806-C-A 22134659-C-A P3_t1 **
24259258-C-A 22113111-C-A P3_b1 **
24259250-T-A 22113103-T-A P3_b1 **
24259238-G-T 22113091-G-T P3_b1 **
24211827-T-G 22065680-T-G P3_b1 **
25955976-C-G 23809829-C-G P1_Y1 16×TG**
23831404-A-G 21669518-A-G **
23831400-T-C 21669514-T-C **
23831374-T-C 21669488-T-C **
23831369-G-AA 21669483-G-AA **
23722886-T-A 21561000-T-A 9×A**
23722882-T-A 21560996-T-A **
23433638-C-A 21271752-C-A **
23417287-T-C 21255401-T-C **
23187265-CT-C 21025379-CT-C **
25931497-G-T 23785350-G-T P1_Y1 **
25956021-C-A 23809874-C-A P1_Y1 **
22429622-T-C 20267736-T-C DYZ19 **
28478372-T-C 26332225-T-C **
56839799-T-G **
56735560-A-T **
28795728-A-T 26649581-A-T **
28795724-T-C 26649577-T-C **
28795715-G-A 26649568-G-A **
28657624-C-A 26511477-C-A **
28611523-C-A 26465376-C-A **
28542921-G-A 26396774-G-A **
28499441-A-C 26353294-A-C **
26495412-A-C 24349265-A-C P1_Y1 **
25956024-G-T 23809877-G-T P1_Y1 **
26355314-C-A 24209167-C-A P1_Y1 **
26087942-C-A 23941795-C-A P1_Y1 **
26087936-A-T 23941789-A-T P1_Y1 **
26087920-A-T 23941773-A-T P1_Y1 **
26018381-C-G 23872234-C-G P1_Y1 **
26018378-G-T 23872231-G-T P1_Y1 **
26018365-A-T 23872218-A-T P1_Y1 **
25956042-G-T 23809895-G-T P1_Y1 **
25956025-T-A 23809878-T-A P1_Y1 **
22660775-T-C 20498889-T-C **
22204308-C-T 20042422-C-T **
17685728-A-G 15573848-A-G **
18313877-G-T 16201997-G-T P6_Prx **
18810676-G-A 16698796-G-A **
18743413-A-G 16631533-A-G **
18710402-T-G 16598522-T-G **
18707083-T-G 16595203-T-G **
18701732-A-G 16589852-A-G **
18627707-A-C 16515827-A-C **
18401667-G-C 16289787-G-C P6_Gap **
18340489-T-A 16228609-T-A P6_Prx 12×AC**
18313860-G-T 16201980-G-T P6_Prx **
19127643-A-AAT 17015763-A-AAT 12×AT**
18313850-C-A 16201970-C-A P6_Prx **
10880591-A-G **
18313786-C-A 16201906-C-A P6_Prx **
18050502-C-T 15938622-C-T **
17992263-A-T 15880383-A-T P7_Prx **
17992261-C-A 15880381-C-A P7_Prx **
17992250-A-T 15880370-A-T P7_Prx **
17992238-C-A 15880358-C-A P7_Prx 8×A**
17802053-C-A 15690173-C-A **
18925290-C-A 16813410-C-A 6×ATTT**
19297452-G-C 17185572-G-C **
22018395-G-T 19856509-G-T **
19885814-G-T 17773934-G-T P5_Prx **
21852518-C-A 19690632-C-A **
21149582-G-GTTTT 18987696-G-GTTTT 27×T**
20946932-C-T 18785046-C-T P4_Dst **
20469860-A-T 18307974-A-T P5_Dst **
19990628-T-TAA 17878748-T-TAA P5_Prx **
19990625-GGC-G 17878745-GGC-G P5_Prx **
19990623-T-A 17878743-T-A P5_Prx **
19990604-C-A 17878724-C-A P5_Prx **
19953206-G-T 17841326-G-T P5_Prx **
19885799-A-T 17773919-A-T P5_Prx **
19301419-C-T 17189539-C-T **
19792153-TTTTTTCC-T 17680273-TTTTTTCC-T P5_Prx **
19782082-C-A 17670202-C-A P5_Prx **
19782066-C-A 17670186-C-A P5_Prx **
19755030-C-A 17643150-C-A P5_Prx **
19732406-TCA-T 17620526-TCA-T P5_Prx **
19508296-A-G 17396416-A-G **
19502896-C-A 17391016-C-A **
19436758-G-T 17324878-G-T **
19411906-A-T 17300026-A-T **
18313846-C-A 16201966-C-A P6_Prx **
31142-T-G **
10868278-A-T **
10780670-C-A **
3405603-C-A 3537562-C-A **
14505394-C-A 12393599-C-A **
10991595-C-A **
11022465-G-C **
10961179-T-G **
6731422-C-A 6863381-C-A **
2902185-C-A 3034144-C-A **
28755606-C-A 26609459-C-A **
10866183-T-G **
15278992-C-A 13167091-C-A **
10991615-A-C **
10991596-T-A **
10811284-A-C **
10968519-C-A **
21522199-C-A 19360313-C-A **
5888317-C-A 6020276-C-A **
17217063-C-A 15105183-C-A **
11646313-G-T **
21963724-C-A 19801838-C-A **
15411303-C-A 13299423-C-A **
10982434-T-A **
3178388-C-A 3310347-C-A **
5864510-A-G 5996469-A-G **
14174651-C-A 12053945-C-A **
13234936-C-A 11079260-C-A **
14218804-C-A 12098098-C-A **
23831403-G-T 21669517-G-T **
28532061-C-A 26385914-C-A **
10982454-T-C **
18491504-C-A 16379624-C-A P6_Dst **
14251862-C-A 12131156-C-A **
10982433-C-A **
10982418-T-A **
22312735-C-A 20150849-C-A DYZ19 **
24247412-C-CAA 22101265-C-CAA P3_b1 **
10989407-A-C **
13227823-T-A 11072147-T-A **
7020677-C-A 7152636-C-A **
14069051-C-A 11948345-C-A **
10899135-C-A **
10962571-C-T **
18703721-C-A 16591841-C-A **
24259246-C-A 22113099-C-A P3_b1 **
10762522-C-T **
23787328-C-A 21625442-C-A **
10991564-G-C **
10991554-CGG-C **
10991541-CG-C **
10991522-A-G **
14965332-C-A 12853407-C-A **
17654959-C-A 15543079-C-A **
10851880-G-T **
7042696-C-A 7174655-C-A **
3112215-C-A 3244174-C-A **
10798311-AATTCCATTCCATTCCATTCCATTCCATTCCATTCC-A **
15742192-G-T 13630312-G-T **
22240961-C-CA 20079075-C-CA DYZ19 **
22993299-C-A 20831413-C-A **
7782957-G-T 7914916-G-T **
10815127-T-C **
3131717-G-T 3263676-G-T **
22522321-C-A 20360435-C-A **
18050540-C-A 15938660-C-A **
26018387-A-T 23872240-A-T P1_Y1 **
23831360-C-T 21669474-C-T **
10757359-C-A **
11026911-CTCCAA-C **
10989428-C-CTCCCT **
10989416-C-G **
3492741-C-A 3624700-C-A **
10801633-A-T **
23200756-C-A 21038870-C-A **
14241098-C-A 12120392-C-A **
15411300-C-A 13299420-C-A **
5267097-A-G 5399056-A-G **
10767630-C-A **
16783649-C-A 14671769-C-A **
10982471-T-C **
18263777-C-T 16151897-C-T **
14174681-C-A 12053975-C-A **
10962608-C-T **
10683128-C-A **
28544924-C-A 26398777-C-A **
2702752-A-C 2834711-A-C **
10962569-C-A **
7255201-C-A 7387160-C-A **
9920558-A-T 10082949-A-T **
9920614-T-A 10083005-T-A **
9920612-T-G 10083003-T-G **
9920609-A-C 10083000-A-C **
9920601-A-T 10082992-A-T **
7347811-C-T 7479770-C-T FGC5449 **
9920591-T-A 10082982-T-A **
9920565-A-T 10082956-A-T **
9920556-T-C 10082947-T-C **
9932596-A-C 10094987-A-C **
9856002-A-G 10018393-A-G **
9521248-G-T 9683639-G-T **
9497058-C-A 9659449-C-A **
18082947-C-A 15971067-C-A **
8690509-G-A 8822468-G-A **
8673838-C-A 8805797-C-A **
17580159-C-A 15468279-C-A **
10815130-A-T **
9929708-G-A 10092099-G-A **
9936606-T-C 10098997-T-C **
8036037-A-T 8167996-A-T **
10687339-A-G **
18985077-C-A 16873197-C-A **
10848327-C-A **
59008423-C-T 56862276-C-T **
10807705-C-A **
20793453-AATATAT-A 18631567-AATATAT-A P4_Prx 12×AT**
10779328-C-T **
10779062-A-T **
10779060-C-A **
10687327-C-T **
9955396-T-G 10117787-T-G **
10687304-A-T **
10687276-T-A **
10687262-C-G **
10658131-C-G **
10658125-T-C **
10026155-C-A 10188546-C-A **
10026149-G-A 10188540-G-A **
10026148-T-C 10188539-T-C **
8070071-C-A 8202030-C-A **
8170874-C-A 8302833-C-A **
7968207-A-T 8100166-A-T **
4268664-T-C 4400623-T-C **
5992601-T-A 6124560-T-A **
5804377-G-A 5936336-G-A **
5740780-GAACTA-G 5872739-GAACTA-G **
5621232-G-A 5753191-G-A **
5559484-G-T 5691443-G-T **
5462542-G-T 5594501-G-T **
5195540-C-A 5327499-C-A **
4524746-G-A 4656705-G-A **
4240425-C-A 4372384-C-A **
6700715-T-C 6832674-T-C **
4118202-G-T 4250161-G-T **
3628281-T-C 3760240-T-C **
3492619-A-T 3624578-A-T **
3286722-T-G 3418681-T-G **
24047614-C-A 21901467-C-A **
3093788-G-C 3225747-G-C **
10671614-A-C **
2859195-C-T 2991154-C-T **
6648765-C-A 6780724-C-A **
6332661-CA-C 6464620-CA-C IR3_Dst **
6700722-G-A 6832681-G-A **
7167571-T-G 7299530-T-G **
7613992-A-C 7745951-A-C **
7573292-T-A 7705251-T-A **
7450378-T-C 7582337-T-C IR1_L **
23831393-G-A 21669507-G-A **
7348678-T-C 7480637-T-C **
7294736-C-CAT 7426695-C-CAT **
7252312-G-C 7384271-G-C **
6700726-CCT-C 6832685-CCT-C **
15818477-C-A 13706597-C-A **
7142867-G-A 7274826-G-A **
10948297-TTTCCA-T **
6855458-T-C 6987417-T-C **
6780811-C-A 6912770-C-A **
6712592-G-T 6844551-G-T **
23184389-T-A 21022503-T-A **
7360375-C-A 7492334-C-A ***
22029940-C-A 19868054-C-A ***
10690802-C-A ***
22011808-C-A 19849922-C-A ***
19564503-C-A 17452623-C-A ***
18634733-C-A 16522853-C-A ***
12786501-CTTTTT-C 16×T***
56839963-T-G ***
56839965-T-A ***
56839998-T-A ***
10947627-TA-AA,T ***
23827542-CAAA-C 21665656-CAAA-C 17×A***
8145276-C-A 8277235-C-A ***
2790407-C-A 2922366-C-A ***
16763803-T-C 14651923-T-C ***
16680629-C-A 14568749-C-A ***
6867680-GT-G,GTTT 6999639-GT-G,GTTT 18×T***
14946174-C-A 12834248-C-A ***
14933501-CT-C 12821566-CT-C ***
7360210-C-A 7492169-C-A ***
7885292-C-A 8017251-C-A ***
8407357-G-T 8539316-G-T ***
17052603-C-A 14940723-C-A ***
8779383-C-A 8911342-C-A ***
13487667-C-T 11331991-C-T ***
10787939-T-C ***
10881020-A-C ***
10881004-A-G ***
10880995-C-A ***
10880990-C-G ***
10880976-T-G ***
2752415-TAAA-T,TAAAAAA 2884374-TAAA-T,TAAAAAA 23×A***
10925501-T-TAC ***
22804143-A-G 20642257-A-G ***
19395466-T-C 17283586-T-C ***
56742654-A-G ***
56742660-T-G ***
10776072-CTCAAT-C,CTATAT ***
23437953-ATA-A,ATG 21276067-ATA-A,ATG ***
56846999-G-T ***
19536211-G-T 17424331-G-T ***
19529774-C-A 17417894-C-A ***
21182165-GA-G 19020279-GA-G 10×A***
19391703-ATTTT-A 17279823-ATTTT-A 14×T***
13467954-G-A 11312278-G-A ***
18913703-C-A 16801823-C-A ***
6513526-C-A 6645485-C-A ***
18417721-A-G 16305841-A-G P6_Gap ***
7321778-C-A 7453737-C-A ***
18184902-G-T 16073022-G-T ***
18177376-C-A 16065496-C-A ***
10999864-C-CGA ***
4505077-C-A 4637036-C-A ***
17914371-C-A 15802491-C-A ***
10881015-T-TTTCAC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 210273926931475661117469481
Used in age calculations926931475661117469481
Counts of SNPs2724
Variant counts last updated 2019-10-28 02:46:30.



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