Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S691 > BY3127 > BY25839

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
93409
6241905-C-T 6373864-C-T IR3_Dst A*
28811597-G-A 26665450-G-A A*
7704322-C-T 7836281-C-T BZ330 YY+
14275958-C-T 12155252-C-T BY94488 YY+
20516-C-T +
4561308-A-C 4693267-A-C ZS498 FGC24474 +
18223711-T-G 16111831-T-G BY121004 Y+
13845139-A-T 11724433-A-T BY91266 +
14331941-G-A 12211235-G-A BY94957 YY+
22875271-T-G 20713385-T-G BY141385 YY+
6785951-G-A 6917910-G-A BY61295 YY+
19169645-G-A 17057765-G-A BY126925 Y+
7836872-C-T 7968831-C-T BY68080 YY+
22144975-T-C 19983089-T-C BY137978 YY+
22459482-G-T 20297596-G-T BY220331 DYZ19 +
21527053-C-T 19365167-C-T BY133592 YY+
22289163-T-A 20127277-T-A DYZ19 *
13842818-CAATGG-C 11722112-CAATGG-C 5×AATGG*
10919518-A-G **
10919536-T-A **
10919490-T-C **
10925780-A-C **
10919512-C-G **
10919511-G-A **
34305-C-A **
10913737-T-G **
10913736-A-G **
10913734-T-A **
10913729-C-A **
10913716-G-A **
10911249-G-A **
10911246-G-A **
10911239-T-A **
10909685-CA-C **
10887774-C-A **
10875772-A-ACTCTG **
10873464-A-C **
10932428-T-G **
10948103-C-G **
10933569-C-A **
10994467-C-T **
13480483-A-T 11324807-A-T **
13460370-G-C 11304694-G-C **
13460363-A-G 11304687-A-G **
13453253-C-G 11297577-C-G **
13453250-A-G 11297574-A-G **
13310968-C-A 11155292-C-A **
13222090-G-A 11066414-G-A **
11028203-T-C **
11001096-C-T **
11001094-T-A **
11001090-T-C **
10993103-C-G **
10938394-T-A **
10991212-T-G **
10987425-A-T **
10971984-C-G **
10971969-T-TTCCTTTCCTC **
10971928-A-C **
10971145-C-A **
10950410-T-C **
10949038-C-A **
10847793-C-A **
10939792-C-G **
10939772-C-G **
10939761-C-G **
10860933-T-C **
10790072-A-T **
10847524-T-G **
7463940-G-T 7595899-G-T IR1_L **
10025157-C-A 10187548-C-A **
10004620-C-A 10167011-C-A **
9973470-C-A 10135861-C-A **
9940084-A-C 10102475-A-C **
9474256-G-T 9636647-G-T **
9109463-G-T **
8697697-C-A 8829656-C-A **
8669841-T-G 8801800-T-G **
8389738-G-A 8521697-G-A **
7984631-C-A 8116590-C-A **
7383752-C-T 7515711-C-T **
10059366-A-T 10221757-A-T **
7368967-C-CT 7500926-C-CT **
7298826-C-A 7430785-C-A **
7223100-C-A 7355059-C-A **
7155462-C-A 7287421-C-A **
7097921-T-A 7229880-T-A **
6911300-T-G 7043259-T-G **
6731289-G-T 6863248-G-T **
17645489-A-AATTT 15533609-A-AATTT 11×ATTT**
6392570-C-A 6524529-C-A **
6344745-G-T 6476704-G-T **
6244492-CA-C 6376451-CA-C IR3_Dst **
10059357-T-A 10221748-T-A **
10653997-T-A **
10839921-C-A **
10752967-T-C **
10839139-T-G **
10819046-A-C **
10796672-C-CTGATG **
13716530-TGGAATGAAA-T 11560854-TGGAATGAAA-T **
10789574-C-T **
10780142-C-A **
10780053-T-C **
10769464-G-T **
10769447-T-A **
10758034-C-A **
10752998-T-C **
10752952-C-G **
10656032-TTCACA-T **
10752948-A-C **
10751704-C-G **
10748859-T-G **
10692484-T-G **
10678639-A-T **
10678621-TC-T **
10678618-C-CA **
10673470-T-A **
10668589-T-C **
10668364-C-A **
10656340-C-A **
13626678-T-C 11471002-T-C **
14109451-C-T 11988745-C-T **
11646280-A-C **
20666932-A-G 18505046-A-G P4_Prx **
23065030-A-G 20903144-A-G **
22995440-C-A 20833554-C-A **
22715144-TAAAAAA-T 20553258-TAAAAAA-T 23×A**
22541129-G-C 20379243-G-C **
22489466-T-A 20327580-T-A DYZ19 **
22483328-G-A 20321442-G-A DYZ19 **
22335152-C-T 20173266-C-T DYZ19 **
22313426-C-A 20151540-C-A DYZ19 **
22134109-C-T 19972223-C-T **
20888556-A-G 18726670-A-G P4_Dst **
20659330-G-T 18497444-G-T P4_Prx **
23345782-C-A 21183896-C-A **
20404445-C-A 18242559-C-A P5_Dst 29×A**
20366638-G-T 18204752-G-T P5_Dst **
19938644-A-C 17826764-A-C P5_Prx **
19792688-T-G 17680808-T-G P5_Prx **
19756408-T-G 17644528-T-G P5_Prx **
19739396-G-T 17627516-G-T P5_Prx **
19698577-TG-T 17586697-TG-T P5_Prx **
19463365-C-A 17351485-C-A **
19296897-T-G 17185017-T-G **
19271562-AAG-A 17159682-AAG-A **
19204481-A-G 17092601-A-G **
23285891-T-C 21124005-T-C **
23789314-C-A 21627428-C-A **
18966970-C-A 16855090-C-A **
27570773-G-T 25424626-G-T P1_Y2 **
56870280-G-T **
56858770-A-C **
56742783-A-T **
56742776-G-T **
56742760-TG-T **
28775176-C-A 26629029-C-A **
28665191-CAT-C 26519044-CAT-C **
28639727-C-A 26493580-C-A **
28500156-C-A 26354009-C-A **
27996120-TCTAGCA-T 25849973-TCTAGCA-T P1_Y2 **
27906662-A-G 25760515-A-G P1_Y2 **
27468160-G-T 25322013-G-T P1_Y2 **
23818395-T-G 21656509-T-G **
26224897-T-G 24078750-T-G P1_Y1 **
26224857-A-T 24078710-A-T P1_Y1 **
26224786-G-T 24078639-G-T P1_Y1 **
26073042-G-C 23926895-G-C P1_Y1 **
25993996-T-G 23847849-T-G P1_Y1 **
25560971-G-T 23414824-G-T P1_gr1 **
24405135-C-A 22258988-C-A **
24405134-C-T 22258987-C-T **
24405059-A-C 22258912-A-C **
24295900-C-A 22149753-C-A P3_t1 **
24108460-T-G 21962313-T-G P3_b1 **
19204440-G-T 17092560-G-T **
18361488-G-T 16249608-G-T P6_Prx **
11649736-T-G **
14423943-C-A 12303218-C-A **
15221297-GATTGT-G 13109383-GATTGT-G **
15221031-C-A 13109117-C-A **
14795231-C-A 12683302-C-A **
14794969-C-T 12683040-C-T **
14661478-C-A 12549543-C-A **
14633124-G-T 12521193-G-T **
14632886-G-T 12520955-G-T **
14558507-C-A 12446708-C-A **
14553020-C-A 12441221-C-A **
14474669-C-A 12353938-C-A **
14395635-T-G 12274931-T-G **
15731271-T-C 13619391-T-C **
14128255-C-A 12007549-C-A **
14109504-A-G 11988798-A-G **
14109489-T-C 11988783-T-C **
14109483-A-C 11988777-A-C **
14109476-C-G 11988770-C-G **
14109475-C-T 11988769-C-T **
14109468-C-T 11988762-C-T **
14065525-A-T 11944819-A-T **
13895103-C-A 11774397-C-A **
13821423-A-C 11700717-A-C **
11650512-G-A **
15497972-ATTTTTTTT-A 13386092-ATTTTTTTT-A 26×T**
15761913-A-T 13650033-A-T **
17991317-T-G 15879437-T-G P7_Prx **
16429016-G-T 14317136-G-T **
17991294-A-ATC 15879414-A-ATC P7_Prx **
17991282-A-C 15879402-A-C P7_Prx **
17955959-C-A 15844079-C-A **
17884698-C-A 15772818-C-A **
17859938-C-A 15748058-C-A **
17535474-C-A 15423594-C-A **
17492130-C-A 15380250-C-A **
17480087-A-C 15368207-A-C **
17466892-G-T 15355012-G-T **
17211378-T-A 15099498-T-A **
16868672-T-G 14756792-T-G **
16410255-A-T 14298375-A-T **
15773448-C-A 13661568-C-A **
16351665-G-T 14239785-G-T **
16267063-T-G 14155183-T-G **
16095342-T-A 13983462-T-A **
16063169-G-C 13951289-G-C **
16034399-C-A 13922519-C-A **
16008085-G-T 13896205-G-T **
16007141-A-C 13895261-A-C **
15944095-A-C 13832215-A-C **
15921954-G-T 13810074-G-T **
15892751-A-G 13780871-A-G **
15793528-C-A 13681648-C-A **
6244486-C-ATA 6376445-C-ATA IR3_Dst **
6486485-G-T 6618444-G-T **
6233728-A-ACC 6365687-A-ACC IR3_Dst **
9498965-A-C 9661356-A-C **
19056195-C-A 16944315-C-A **
14181856-G-T 12061150-G-T **
11015866-ACCATTCCATT-A **
4150177-G-T 4282136-G-T **
10860920-G-C **
19698568-A-AT 17586688-A-AT P5_Prx **
17403817-C-A 15291937-C-A **
6106062-A-C 6238021-A-C BY59097 **
13997771-CTTT-C 11877065-CTTT-C 17×T**
15740754-C-A 13628874-C-A **
5359042-G-T 5491001-G-T **
10919575-AG-A **
21543164-C-A 19381278-C-A Y106828 **
7018049-TTTAG-T 7150008-TTTAG-T **
10671052-A-C **
19318178-CTTTT-C 17206298-CTTTT-C 28×T**
13716565-T-C 11560889-T-C **
13716448-G-C 11560772-G-C **
10938384-T-A **
10913775-C-T **
26099739-A-T 23953592-A-T P1_Y1 **
15131768-C-A 13019855-C-A **
20603950-C-A 18442064-C-A P5_Dst **
16030118-C-A 13918238-C-A **
3853663-C-A 3985622-C-A **
11003260-A-T **
10830911-C-A **
28776738-C-A 26630591-C-A **
7097488-G-T 7229447-G-T **
16039130-C-A 13927250-C-A **
10751066-T-C **
10862090-CTTTCT-C **
10862079-C-G **
10862062-T-C **
5969885-C-A 6101844-C-A **
10862059-T-G **
4533510-C-A 4665469-C-A **
10939769-C-T **
56742767-G-T **
6330229-C-CAA 6462188-C-CAA IR3_Dst **
19020152-C-A 16908272-C-A **
10744362-G-T **
10862102-C-A **
10992267-A-T **
10864832-C-A **
13218718-C-A 11063042-C-A **
6244484-G-A 6376443-G-A IR3_Dst **
11028200-C-A **
8110675-T-G 8242634-T-G **
16777817-C-A 14665937-C-A **
22356784-C-A 20194898-C-A DYZ19 **
10663425-C-A **
10867970-A-ACC **
14270072-C-A 12149366-C-A **
9731591-C-A 9893982-C-A IR3_Prx **
10887928-T-C **
10971912-C-CGGATG **
13695469-G-A 11539793-G-A **
13461023-C-G 11305347-C-G **
22345730-G-T 20183844-G-T DYZ19 **
14639064-C-A 12527133-C-A 18×T**
13701371-C-T 11545695-C-T **
13701353-G-A 11545677-G-A **
13255205-C-T 11099529-C-T **
10656022-T-A **
10656021-A-C **
13865969-CGAATG-C 11745263-CGAATG-C 12×GAATG**
20557683-C-A 18395797-C-A P5_Dst **
22356760-G-T 20194874-G-T BY217650 DYZ19 **
26010268-G-GTATATA 23864121-G-GTATATA P1_Y1 21×TA**
22430115-A-T 20268229-A-T DYZ19 **
22430102-T-C 20268216-T-C DYZ19 **
17376062-G-T 15264182-G-T **
14109471-A-C 11988765-A-C F18482 **
13716542-T-G 11560866-T-G **
5634893-A-G 5766852-A-G **
13633047-A-C 11477371-A-C BY40838S3202 FGC8047 **
13716556-A-G 11560880-A-G **
13466085-G-C 11310409-G-C **
10761559-G-T **
13466063-T-C 11310387-T-C **
10867965-CAT-C **
13716507-C-T 11560831-C-T **
10867959-C-G **
8333620-TCTC-T 8465579-TCTC-T **
6944943-CAAA-C 7076902-CAAA-C 28×A**
17301259-AAAG-A 15189379-AAAG-A **
11028152-C-T **
15412307-T-G 13300427-T-G **
10837571-T-A **
10837567-C-G **
10837564-G-C **
10792431-C-G **
15127848-T-G 13015935-T-G **
56850357-A-G **
13466070-C-T 11310394-C-T **
26010325-C-A 23864178-C-A P1_Y1 **
10770510-T-C **
28818112-G-A 26671965-G-A **
18890464-CAAAA-C 16778584-CAAAA-C 15×A**
14088910-C-A 11968204-C-A **
10997745-A-T **
19746884-TG-T 17635004-TG-T P5_Prx **
17622621-C-A 15510741-C-A **
56850394-C-A **
10769456-T-A **
13858864-A-G 11738158-A-G **
10971883-A-G **
10862061-C-A **
17991262-A-G 15879382-A-G P7_Prx **
22775316-C-A 20613430-C-A **
3491101-C-A 3623060-C-A **
3651407-G-T 3783366-G-T **
3681487-T-C 3813446-T-C **
3681589-C-T 3813548-C-T **
3726502-C-A 3858461-C-A **
26078773-G-T 23932626-G-T P1_Y1 **
3851632-C-A 3983591-C-A **
23126484-C-A 20964598-C-A **
5870261-C-A 6002220-C-A **
3250674-C-A 3382633-C-A **
7464039-A-C 7595998-A-C IR1_L **
9665554-CACACA-C 9827945-CACACA-C IR3_Prx **
10987426-T-C **
28535588-C-A 26389441-C-A **
28768862-G-T 26622715-G-T **
5755129-C-A 5887088-C-A **
19244792-C-A 17132912-C-A **
11025204-G-T FGC83100 **
2744916-G-T 2876875-G-T **
16033664-C-A 13921784-C-A **
10913765-C-A **
10678606-CCA-T **
10911244-A-C **
14635626-C-A 12523695-C-A **
10769400-CA-C **
21457772-G-T 19295886-G-T **
3057172-C-A 3189131-C-A **
10756081-C-A **
22660850-C-A 20498964-C-A **
26228769-C-A 24082622-C-A P1_Y1 **
10919563-G-T **
8058564-C-A 8190523-C-A **
14195180-C-T 12074474-C-T Y66151 **
10911230-G-A **
9356929-C-A 9519320-C-A **
10846560-G-C **
13460362-A-T 11304686-A-T **
10862060-T-G **
10986428-C-G **
7127364-C-A 7259323-C-A **
18443400-A-T 16331520-A-T P6_Dst **
16541033-C-A 14429153-C-A **
22880714-C-A 20718828-C-A **
10678610-T-TAC **
10919520-T-C **
2803588-C-A 2935547-C-A Y81490 **
10997718-C-CT **
5459183-C-A 5591142-C-A **
5073542-AATAT-A 5205501-AATAT-A **
6337572-T-C 6469531-T-C IR3_Dst **
17552020-C-A 15440140-C-A **
9416869-C-A 9579260-C-A **
5235012-T-C 5366971-T-C **
11658427-C-A **
10994199-C-T **
10997720-AT-A **
5235030-C-G 5366989-C-G **
4447335-G-T 4579294-G-T **
5869503-C-A 6001462-C-A **
26224838-T-A 24078691-T-A P1_Y1 **
20404443-C-A 18242557-C-A P5_Dst **
10768669-A-G **
15745643-C-A 13633763-C-A **
13854431-C-A 11733725-C-A **
10785242-C-T **
10663465-C-A **
26224810-T-TAC 24078663-T-TAC P1_Y1 **
3870577-A-C 4002536-A-C **
4457480-T-A 4589439-T-A **
10793533-C-A **
10919530-G-C **
17455824-C-A 15343944-C-A **
2772952-C-A 2904911-C-A **
3991823-A-T 4123782-A-T **
56850339-TAG-T **
10939833-G-T **
14341975-G-A 12221270-G-A **
3992288-C-G 4124247-C-G **
4665304-C-A 4797263-C-A **
14065509-C-A 11944803-C-A **
13257554-C-G 11101878-C-G **
4094923-C-A 4226882-C-A **
16075266-T-G 13963386-T-G **
4261892-C-A 4393851-C-A **
4150221-G-T 4282180-G-T **
6357935-G-T 6489894-G-T **
10919534-T-G **
15280639-C-A 13168738-C-A **
4271317-C-A 4403276-C-A **
3850249-C-A 3982208-C-A ***
6892888-C-CT 7024847-C-CT 10×T***
56838081-G-T ***
9215091-C-A 9377482-C-A ***
2970367-G-A 3102326-G-A ***
15381487-C-CA 13269607-C-CA 9×A***
3271644-CT-C,CTT 3403603-CT-C,CTT 11×T***
10934782-C-T ***
58978908-TGCCAA-T,TTCCAC 56832761-TGCCAA-T,TTCCAC ***
10780150-CCA-C ***
10789346-A-T ***
13856692-C-T 11735986-C-T ***
19107396-C-A 16995516-C-A ***
10965069-C-T ***
10682556-C-T ***
9956404-C-A 10118795-C-A ***
10780140-C-A ***
14515809-C-A 12404010-C-A ***
14549309-CAAA-C,CAAAA 12437510-CAAA-C,CAAAA 16×A***
7237322-C-A 7369281-C-A ***
14586025-G-T 12474225-G-T ***
15011302-A-G 12899390-A-G ***
13466104-C-A 11310428-C-A A16906 ***
22247354-C-A 20085468-C-A DYZ19 ***
7009187-CTT-C,CTTT 7141146-CTT-C,CTTT 19×T***
10911740-A-C,G ***
10781285-A-C ***
10780186-C-T ***
10780181-C-T ***
10780150-C-T ***
10780145-C-T ***
10934809-A-T ***
10934797-T-G ***
10934789-G-C ***
10780137-A-GGC ***
10918242-G-T ***
10934786-C-G ***
10980721-T-TTCTACTCCACTCCAC ***
13466092-C-A 11310416-C-A ***
16564350-TGATA-T 14452470-TGATA-T 11×GATA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 934091000385581539398018888
Used in age calculations1000385581539398018888
Counts of SNPs99
Variant counts last updated 2019-10-11 02:51:31.



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