Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
101567
25998176-A-AT 23852029-A-AT P1_Y1 A*
25916156-A-G 23770009-A-G P1_Y1 A*
25999398-T-C 23853251-T-C P1_Y1 A*
20801983-T-C 18640097-T-C P4_Prx A*
23180658-G-A 21018772-G-A YA*
6211205-C-T 6343164-C-T IR3_Dst A*
19786080-C-T 17674200-C-T P5_Prx A*
19761192-A-G 17649312-A-G P5_Prx A*
28816742-G-A 26670595-G-A A*
28817426-A-T 26671279-A-T A*
22286124-C-T 20124238-C-T DYZ19 A*
23714707-C-A 21552821-C-A A*
22273299-G-C 20111413-G-C BY215570 DYZ19 +
22228825-T-C 20066939-T-C BY213268 DYZ19 +
28788536-C-A 26642389-C-A BY151323 +
22459833-A-G 20297947-A-G BY220403 DYZ19 +
7417259-A-G 7549218-A-G BY65107 YY+
7744999-C-A 7876958-C-A BY67296 YY+
22784916-G-C 20623030-G-C BY140751 YY+
18026-G-C +
6628385-T-C 6760344-T-C BY60387 YY+
21872582-G-A 19710696-G-A BY136083 YY+
18680495-T-C 16568615-T-C BY123076 YY+
18025884-T-C 15914004-T-C BY119232 Y+
4062900-G-A 4194859-G-A BY57956 +
17350870-C-A 15238990-C-A BY114082 YY+
13992501-A-G 11871795-A-G BY92150 YY+
16393496-A-G 14281616-A-G BY107482 YY+
2694248-A-G 2826207-A-G BY55833 YY+
2660311-G-C 2792270-G-C BY55708 YY+
15516665-C-T 13404785-C-T BY102150 YY+
7745042-G-C 7877001-G-C BY67297 YY+
21921154-C-T 19759268-C-T BY136459 YY+
22908169-G-A 20746283-G-A BY141615 YY+
15504-C-A +
8761122-C-T 8893081-C-T BY75701 YY+
22437230-C-G 20275344-C-G BY218308 DYZ19 +
8121826-T-A 8253785-T-A BY70113 YY+
23867132-A-C 21705246-A-C BY148584 Y+
6701316-G-A 6833275-G-A BY60808 YY+
23862282-A-G 21700396-A-G BY148507 Y+
23242197-G-T 21080311-G-T BY143980 YY+
23637931-T-G 21476045-T-G BY146949 Y+
23251804-C-A 21089918-C-A BY144120 YY+
22237810-A-C 20075924-A-C DYZ19 *
9730388-T-TAC 9892779-T-TAC IR3_Prx *
28810003-G-A 26663856-G-A *
13223391-A-T 11067715-A-T **
13713956-G-T 11558280-G-T **
13434053-G-T 11278377-G-T **
13510549-G-T 11354873-G-T **
13513575-C-A 11357899-C-A **
11035354-TTCTGC-T **
10761026-T-G **
10757795-T-C **
13567160-T-A 11411484-T-A **
13990146-T-G 11869440-T-G **
11643491-A-T **
11669325-G-C **
13854601-T-C 11733895-T-C **
13855116-C-T 11734410-C-T **
11020479-A-C **
14076744-C-A 11956038-C-A **
14100183-G-T 11979477-G-T **
10757777-C-A **
14216402-G-C 12095696-G-C **
10757772-C-A **
14369156-C-A 12248452-C-A **
14382001-C-A 12261297-C-A **
12375160-A-C **
11030702-C-G **
10984474-C-A **
11009909-G-T **
10869073-C-A **
10810626-T-C **
10815718-C-T **
10815754-T-C **
10817308-T-A **
10831534-T-C **
10801923-C-G **
10831662-G-A **
10848471-C-A **
10858872-A-C **
10859125-C-A **
10800813-T-C **
10787517-G-A **
10872125-C-G **
11003387-T-C **
10773148-A-ACACCT **
10886931-C-A **
10893364-A-T **
10766857-A-T **
10947337-C-G **
10947659-T-TCACTC **
10761082-CTG-C **
10761052-A-G **
10951066-C-CACTCA **
10975676-C-A **
10976572-C-T **
11003296-TCCCAA-T **
11003315-T-A **
14529203-T-C 12417404-T-C **
17147491-C-A 15035611-C-A **
14567426-G-T 12455626-G-T **
22782055-C-G 20620169-C-G **
20404390-G-T 18242504-G-T P5_Dst **
20593078-T-G 18431192-T-G P5_Dst **
20593112-T-G 18431226-T-G P5_Dst **
20842499-AG-A 18680613-AG-A P4_Dst **
21856789-T-TC 19694903-T-TC **
22029977-A-G 19868091-A-G **
22065148-C-A 19903262-C-A **
22190660-G-GA 20028774-G-GA 8×A**
22253056-C-T 20091170-C-T DYZ19 **
22425720-C-A 20263834-C-A DYZ19 **
22438596-A-C 20276710-A-C DYZ19 **
22469952-C-A 20308066-C-A BY222329 DYZ19 **
22527138-T-C 20365252-T-C **
22621909-C-A 20460023-C-A **
22876563-C-A 20714677-C-A **
19949238-C-A 17837358-C-A P5_Prx **
27917422-G-T 25771275-G-T P1_Y2 **
16781-A-T **
56858501-G-C **
56842284-G-T **
56756946-C-A **
28733007-T-C 26586860-T-C **
28546761-G-T 26400614-G-T **
27570879-T-C 25424732-T-C P1_Y2 **
23517654-C-T 21355768-C-T **
26440626-A-G 24294479-A-G P1_Y1 **
26325101-G-T 24178954-G-T P1_Y1 **
25861160-G-T 23715013-G-T P1_Y1 **
25466766-A-T 23320619-A-T P2_r2 **
24664393-T-A 22518246-T-A P3_b2 **
24407628-G-T 22261481-G-T **
20137209-G-T 18025329-G-T P5_Dst **
19924697-C-G 17812817-C-G P5_Prx **
14680386-C-A 12568452-C-A **
17218249-T-G 15106369-T-G **
14792874-C-A 12680945-C-A **
14960343-G-A 12848418-G-A **
15059716-C-A 12947808-C-A **
16165137-G-GAT 14053257-G-GAT P8_Dst **
16209853-G-T 14097973-G-T **
16267293-C-A 14155413-C-A **
16412287-A-C 14300407-A-C **
16503681-C-A 14391801-C-A **
16629351-A-G 14517471-A-G **
16706208-G-T 14594328-G-T **
17103707-G-C 14991827-G-C **
17127247-C-A 15015367-C-A **
10744303-A-C **
17155205-C-A 15043325-C-A **
17323556-GA-G 15211676-GA-G **
19701636-A-C 17589756-A-C P5_Prx **
19000617-C-A 16888737-C-A **
19690214-A-G 17578334-A-G P5_Prx **
19310713-T-A 17198833-T-A **
19310712-T-A 17198832-T-A **
19310706-T-A 17198826-T-A **
19303886-G-T 17192006-G-T **
19248124-A-T 17136244-A-T **
18921510-T-C 16809630-T-C **
17616746-G-T 15504866-G-T **
18915227-A-C 16803347-A-C **
18710194-T-G 16598314-T-G **
18573618-C-A 16461738-C-A **
18518239-T-A 16406359-T-A P6_Dst **
18420385-G-T 16308505-G-T P6_Gap **
17928078-G-T 15816198-G-T **
10757184-C-A **
13457568-T-A 11301892-T-A **
13855117-A-G 11734411-A-G **
18346591-C-A 16234711-C-A P6_Prx **
16889896-C-A 14778016-C-A **
3271516-C-A 3403475-C-A **
8198-C-A **
8911569-C-A 9043528-C-A **
6267694-ACT-A 6399653-ACT-A IR3_Dst **
10037723-C-A 10200114-C-A **
3727980-C-A 3859939-C-A **
8690511-G-A 8822470-G-A **
3627917-C-A 3759876-C-A **
10872136-A-C **
7040236-G-T 7172195-G-T **
3990540-C-A 4122499-C-A **
13999873-G-T 11879167-G-T **
10941224-GCCATT-G **
21438288-G-A 19276402-G-A **
10815725-G-C **
10857765-G-T **
10683587-T-C **
22303531-T-A 20141645-T-A DYZ19 **
16701642-C-A 14589762-C-A **
3271703-C-A 3403662-C-A **
5727929-G-GA 5859888-G-GA 8×A**
10872190-T-C **
10671329-T-C **
56875500-A-G **
18447704-C-A 16335824-C-A P6_Dst **
17196475-C-A 15084595-C-A **
19394149-G-A 17282269-G-A **
6729638-G-T 6861597-G-T **
7243830-C-A 7375789-C-A **
11035397-TACTTC-T **
11035382-C-A **
18398188-CACACAT-C 16286308-CACACAT-C P6_Gap **
10839033-T-C **
10683605-G-GATAACATTGC **
10683583-C-T **
11647806-G-T **
10983975-C-T **
24013847-CTATATATATATATATA-C 21867700-CTATATATATATATATA-C 21×TA**
4416881-AAAA-C 4548840-AAAA-C **
3047561-C-A 3179520-C-A **
15323694-G-T 13211812-G-T **
13196998-C-A 11041322-C-A **
5824781-C-A 5956740-C-A **
10983974-C-A **
15395207-G-T 13283327-G-T **
10761060-C-T **
24671066-A-C 22524919-A-C P3_b2 **
17876384-C-A 15764504-C-A FGC45164 **
28818242-A-C 26672095-A-C **
13255434-A-G 11099758-A-G **
7322673-C-A 7454632-C-A **
18688500-C-CAAAAA 16576620-C-CAAAAA 20×A**
10973965-C-AT **
28505252-C-A 26359105-C-A **
21604096-C-A 19442210-C-A **
9047586-C-A 9209977-C-A **
7183029-C-A 7314988-C-A **
10744295-T-A **
16480025-C-A 14368145-C-A **
18423903-G-A 16312023-G-A A3435 P6_Gap **
6479246-C-A 6611205-C-A **
10757780-A-C **
4371019-C-A 4502978-C-A **
16003914-C-A 13892034-C-A **
21362008-C-A 19200122-C-A **
14558509-C-A 12446710-C-A **
13310984-G-A 11155308-G-A **
13457766-C-A 11302090-C-A **
21127443-C-A 18965557-C-A **
22520563-C-A 20358677-C-A **
19409983-C-A 17298103-C-A **
27499309-TCA-T 25353162-TCA-T P1_Y2 **
10689120-C-A **
15648866-C-A 13536986-C-A **
7092330-A-T 7224289-A-T **
4527021-C-A 4658980-C-A **
4609194-G-T 4741153-G-T **
4665986-C-A 4797945-C-A **
4995350-T-A 5127309-T-A **
5050986-A-C 5182945-A-C **
5427589-A-C 5559548-A-C **
5443829-C-A 5575788-C-A **
5627756-T-C 5759715-T-C **
6039608-C-A 6171567-C-A **
6347734-G-T 6479693-G-T **
6489371-CAA-C 6621330-CAA-C 25×A**
6726996-G-T 6858955-G-T **
6748078-C-G 6880037-C-G **
6916099-C-G 7048058-C-G **
7114703-G-T 7246662-G-T **
4460329-G-C 4592288-G-C **
8167833-C-A 8299792-C-A **
10632630-C-A **
9978535-C-T 10140926-C-T **
9928388-C-A 10090779-C-A **
9928238-G-A 10090629-G-A **
8981421-G-T 9143812-G-T **
8697947-G-T 8829906-G-T **
7939473-A-T 8071432-A-T **
7256056-C-A 7388015-C-A **
7645501-C-A 7777460-C-A **
7397740-C-A 7529699-C-A **
7383774-G-A 7515733-G-A **
7347526-T-A 7479485-T-A **
7329203-T-A 7461162-T-A **
7285054-A-T 7417013-A-T **
4517355-G-C 4649314-G-C **
4968291-C-T 5100250-C-T **
4424437-G-T 4556396-G-T **
10898390-C-A **
2697432-T-G 2829391-T-G **
24869444-G-T 22723297-G-T P3_b2 **
15034862-C-A 12922950-C-A **
15648013-C-A 13536133-C-A **
10756199-T-C **
10992677-C-A **
10898375-T-TCCACTCCTC **
2768243-G-C 2900202-G-C **
10898338-C-G **
28533766-C-A 26387619-C-A **
7093666-C-A 7225625-C-A **
10815733-G-T **
10863584-A-T **
10771156-G-T **
2740429-G-A 2872388-G-A **
10899609-C-A **
2775459-A-C 2907418-A-C **
3686448-A-G 3818407-A-G **
3023208-C-A 3155167-C-A **
3644196-C-A 3776155-C-A **
3144942-C-A 3276901-C-A **
3221852-C-A 3353811-C-A **
3544479-C-A 3676438-C-A **
5967734-T-C 6099693-T-C ***
28640579-C-A 26494432-C-A ***
7132001-C-A 7263960-C-A ***
8399256-T-C 8531215-T-C ***
13653391-G-T 11497715-G-T ***
28605697-C-A 26459550-C-A ***
9063131-G-C 9225522-G-C ***
7014279-C-A 7146238-C-A ***
22447734-G-T 20285848-G-T BY168963 DYZ19 ***
13453346-T-TGAC 11297670-T-TGAC ***
10654915-C-A ***
13454557-C-T 11298881-C-T ***
16786213-CTTTTTTTTT-C,CTTTTTTT 14674333-CTTTTTTTTT-C,CTTTTTTT 22×T***
17997213-G-A 15885333-G-A Y12221 Z22988 P7_Gap ***
21464187-G-GGAAAGAAAGAAAGAAA 19302301-G-GGAAAGAAAGAAAGAAA 12×GAAA***
13454562-C-T 11298886-C-T ***
8399140-T-C 8531099-T-C ***
10686580-CCAATCCACTT-C ***
10671029-T-TTCACA ***
3951291-C-A 4083250-C-A ***
21146275-CTTT-C,CTT 18984389-CTTT-C,CTT 17×T***
22542517-T-A 20380631-T-A ***
10912079-A-G ***
10912070-G-C ***
14180834-A-G 12060128-A-G ***
18744201-TCCA-T 16632321-TCCA-T ***
16705367-C-A 14593487-C-A ***
21503994-ATTTTT-A 19342108-ATTTTT-A 19×T***
10860283-C-T ***
4770411-T-C 4902370-T-C ***
21095610-C-A 18933724-C-A ***
10686560-C-A ***
19297717-G-A 17185837-G-A ***
7783345-T-TA 7915304-T-TA ***
9418899-C-A 9581290-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 101567964400578912757790132
Used in age calculations964400578912757790132
Counts of SNPs2322
Variant counts last updated 2019-07-19 21:33:34.



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