Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > BY3332 > PH4023 > BY35077 > 19884409-CAACA-

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
585978
22232100-A-T 20070214-A-T DYZ19 A*
20707525-C-G 18545639-C-G P4_Prx A*
19899104-A-G 17787224-A-G P5_Prx A*
22290989-C-A 20129103-C-A DYZ19 A*
6267618-T-TCA 6399577-T-TCA IR3_Dst 8×CAA*
16099827-G-T 13987947-G-T P8_Prx A*
24253780-A-G 22107633-A-G P3_b1 A*
18924602-TATTCATTC-T 16812722-TATTCATTC-T 9×ATTC+
14974967-A-G 12863042-A-G BY98836 YY+
21257688-T-A 19095802-T-A BY131487 YY+
19312034-T-C 17200154-T-C BY128154 YY+
19197710-G-T 17085830-G-T BY127140 YY+
18065288-A-G 15953408-A-G BY119603 YY+
17358107-G-A 15246227-G-A BY54931 YY+
9646297-C-G 9808688-C-G BY80341 IR3_Prx +
15453421-A-G 13341541-A-G BY101640 YY+
14335279-C-T 12214574-C-T BY94997 YY+
14636166-GT-G 12524235-GT-G +
21959718-T-C 19797832-T-C BY136672 YY+
2874264-T-C 3006223-T-C BY56986 YY+
13849776-G-T 11729070-G-T BY91382 +
13839063-G-C 11718357-G-C BY91073 +
4069811-A-G 4201770-A-G BY57959 +
6644496-C-A 6776455-C-A BY60484 YY+
6875446-T-A 7007405-T-A BY61907 YY+
7455730-A-T 7587689-A-T BY65292 IR1_L +
7531066-C-T 7663025-C-T Y84219 YY+
7973492-C-T 8105451-C-T BY69133 YY+
8001030-TTTTGTAAATA-T 8132989-TTTTGTAAATA-T +
8858710-A-G 8990669-A-G BY76385 YY+
21452505-G-A 19290619-G-A BY133010 YY+
15841020-AT-A 13729140-AT-A +
22460448-C-G 20298562-C-G BY43897 DYZ19 +
22859187-ATGT-A 20697301-ATGT-A +
22487238-G-C 20325352-G-C BY224933 DYZ19 +
22585350-G-A 20423464-G-A BY139308 YY+
22442830-A-G 20280944-A-G BY219168 DYZ19 +
22461616-A-T 20299730-A-T BY220716 DYZ19 +
22273271-G-C 20111385-G-C BY52333 DYZ19 +
22430904-G-A 20269018-G-A DYZ19 *
22280050-G-T 20118164-G-T BY48498 DYZ19 *
22230792-G-C 20068906-G-C DYZ19 *
22238034-C-A 20076148-C-A BY213756 DYZ19 *
28795115-G-T 26648968-G-T *
13567311-G-T 11411635-G-T **
13278567-G-A 11122891-G-A **
22208931-T-C 20047045-T-C **
11011140-C-G **
11003306-T-A **
10994164-C-G **
10994140-C-T **
11000928-C-A **
24836729-A-G 22690582-A-G P3_b2 **
11644239-C-T **
11662355-A-G **
10983745-C-A **
24378674-C-A 22232527-C-A **
24264437-T-G 22118290-T-G P3_b1 **
13895085-C-A 11774379-C-A **
13935070-C-T 11814364-C-T **
13962072-A-C 11841366-A-C **
14097863-T-C 11977157-T-C **
23565863-C-A 21403977-C-A **
14147091-C-A 12026385-C-A **
14232920-C-A 12112214-C-A **
10990338-C-A **
27863657-T-C 25717510-T-C P1_Y2 **
25560768-G-T 23414621-G-T P1_gr1 **
10780023-C-G **
10670987-A-G **
10671032-A-T **
10677046-C-T **
21296667-C-A 19134781-C-A **
28588308-C-A 26442161-C-A **
10770584-A-T **
10770589-A-T **
28549865-A-C 26403718-A-C **
27917429-A-T 25771282-A-T P1_Y2 **
10827196-C-A **
10982811-C-A **
10842166-C-A **
10856543-C-T **
10860077-A-G **
10870071-C-T **
10915788-T-C **
10935510-T-C **
10940341-C-A **
23465281-G-T 21303395-G-T **
10955421-C-A **
27856437-T-C 25710290-T-C P1_Y2 **
14293812-A-C 12173106-A-C **
23380469-C-A 21218583-C-A **
14370714-C-A 12250010-C-A **
19733305-GC-G 17621425-GC-G P5_Prx 8×C**
17549193-C-A 15437313-C-A **
17885918-G-T 15774038-G-T **
18215902-G-A 16104022-G-A **
18344511-C-A 16232631-C-A P6_Prx **
18585751-C-A 16473871-C-A **
18628210-C-T 16516330-C-T **
19007647-C-A 16895767-C-A **
19235646-C-A 17123766-C-A **
19377043-C-A 17265163-C-A **
19754942-T-TTCCC 17643062-T-TTCCC P5_Prx **
17177160-A-C 15065280-A-C **
19878785-A-G 17766905-A-G P5_Prx **
20252774-G-A 18090888-G-A P5_Dst **
20708344-T-G 18546458-T-G P4_Prx **
20936654-G-C 18774768-G-C P4_Dst **
21015080-AGGG-A 18853194-AGGG-A P4_Dst **
21015086-G-A 18853200-G-A P4_Dst **
21015090-G-A 18853204-G-A P4_Dst **
21015105-G-GAGAGA 18853219-G-GAGAGA P4_Dst **
21015107-A-AG 18853221-A-AG P4_Dst **
21268093-C-A 19106207-C-A **
17327328-C-A 15215448-C-A **
16643339-T-C 14531459-T-C **
14370738-C-A 12250034-C-A **
15047473-C-A 12935564-C-A **
14401929-G-A 12281226-G-A **
14512051-C-A 12400256-C-A **
14551518-A-T 12439719-A-T **
21899841-C-A 19737955-C-A **
14742194-G-T 12630262-G-T **
14768424-T-A 12656493-T-A **
14780950-G-C 12669020-G-C **
14912886-C-A 12800953-C-A **
14938628-T-C 12826703-T-C **
22998592-C-A 20836706-C-A **
15302802-C-A 13190901-C-A **
16383788-G-T 14271908-G-T **
15387862-A-G 13275982-A-G **
15616576-C-A 13504696-C-A **
15648860-C-A 13536980-C-A **
15729176-G-T 13617296-G-T **
15731262-G-T 13619382-G-T **
15746395-C-A 13634515-C-A **
16063746-TC-T 13951866-TC-T **
22580169-C-A 20418283-C-A **
16295025-G-C 14183145-G-C **
16309446-C-A 14197566-C-A **
9734974-G-T 9897365-G-T IR3_Prx **
10691033-C-A **
9442050-G-A 9604441-G-A FGC52866 **
11646247-G-T **
13328859-C-A 11173183-C-A **
16075950-C-A 13964070-C-A **
23306602-C-A 21144716-C-A **
3164657-G-T 3296616-G-T **
7411498-C-A 7543457-C-A **
19887304-AC-A 17775424-AC-A P5_Prx **
10796862-CA-C **
10796874-T-C **
10796899-C-A **
10796864-T-TGTCCACTCCTC **
14448311-C-A 12327584-C-A **
11646240-AT-A **
19125691-TCTC-T 17013811-TCTC-T **
14425290-G-T 12304565-G-T **
17383618-C-A 15271738-C-A **
13809638-C-A 11688932-C-A **
14784701-CTTTTTTTT-C 12672771-CTTTTTTTT-C 22×T**
13347874-C-T 11192198-C-T **
56842775-A-C **
14518403-G-A 12406604-G-A **
13811078-G-C 11690372-G-C **
11655327-G-T **
18527788-G-T 16415908-G-T P6_Dst **
17185162-C-A 15073282-C-A **
6619719-C-A 6751678-C-A **
21187270-C-A 19025384-C-A **
10878229-C-A **
18395839-C-A 16283959-C-A P6_Gap **
10941759-C-A **
13224694-C-A 11069018-C-A **
7174339-C-A 7306298-C-A **
8575956-AT-A 8707915-AT-A 28×T**
13347851-T-C 11192175-T-C **
13347854-G-T 11192178-G-T **
13347859-G-A 11192183-G-A **
8649839-C-A 8781798-C-A **
15279523-C-A 13167622-C-A **
14551513-A-T 12439714-A-T **
14551523-C-A 12439724-C-A **
18762538-C-A 16650658-C-A **
3093812-C-A 3225771-C-A **
5606261-C-A 5738220-C-A **
23802019-C-A 21640133-C-A **
11646250-A-ATCAACCCCTG **
4447356-C-A 4579315-C-A **
3726421-C-A 3858380-C-A **
10665096-T-C **
10665101-T-C **
10665106-T-C **
10995347-C-A **
10796906-C-G **
17212251-C-A 15100371-C-A **
22810092-C-A 20648206-C-A **
10839629-C-A **
13642785-C-A 11487109-C-A **
16489909-C-A 14378029-C-A **
21361859-C-A 19199973-C-A **
13856360-A-AAAGGT 11735654-A-AAAGGT **
22211265-C-A 20049379-C-A **
10994165-C-A **
28800427-A-T 26654280-A-T **
4357811-C-T 4489770-C-T **
6666277-T-A 6798236-T-A **
2758809-C-T 2890768-C-T **
2783662-G-T 2915621-G-T **
2806197-T-TG 2938156-T-TG **
2948568-C-A 3080527-C-A **
3020793-C-A 3152752-C-A **
3550592-A-AC 3682551-A-AC **
3696799-G-T 3828758-G-T **
3736280-G-T 3868239-G-T **
3956614-A-G 4088573-A-G **
4315883-T-C 4447842-T-C **
4433868-G-T 4565827-G-T **
3285083-T-C 3417042-T-C **
4604442-C-A 4736401-C-A **
4792401-A-G 4924360-A-G **
4920566-C-T 5052525-C-T **
4995933-C-A 5127892-C-A **
5278658-G-T 5410617-G-T **
5278675-G-T 5410634-G-T **
5902447-G-T 6034406-G-T **
6923145-C-G 7055104-C-G **
5905293-T-G 6037252-T-G **
6408145-G-T 6540104-G-T **
6918571-AT-A 7050530-AT-A **
10862946-C-A **
2741247-C-A 2873206-C-A **
7416782-C-A 7548741-C-A **
7247543-T-G 7379502-T-G **
7650622-A-C 7782581-A-C **
18593312-C-A 16481432-C-A **
56839126-C-T **
7311787-C-A 7443746-C-A **
7925387-T-A 8057346-T-A **
7309970-C-A 7441929-C-A **
4241702-C-A 4373661-C-A **
7127301-C-A 7259260-C-A **
14065396-C-A 11944690-C-A **
8094543-A-C 8226502-A-C **
21397482-C-A 19235596-C-A **
13946245-C-A 11825539-C-A **
7011568-C-A 7143527-C-A **
8698686-C-A 8830645-C-A **
9117844-G-A **
18545007-G-T 16433127-G-T **
56839122-G-C **
10892562-C-CTGCAC,G ***
23253305-C-A 21091419-C-A ***
14103197-C-A 11982491-C-A ***
22849491-CTTTTTTT-C,CTTTT 20687605-CTTTTTTT-C,CTTTT 20×T***
10824062-C-A ***
6672294-C-A 6804253-C-A ***
24468842-G-T 22322695-G-T ***
23803070-G-T 21641184-G-T ***
23042258-C-A 20880372-C-A ***
56830555-C-T ***
23418839-C-A 21256953-C-A ***
10892558-C-A,T ***
6892787-C-T 7024746-C-T ***
15404088-T-C 13292208-T-C ***
10946819-C-A ***
56842749-A-G ***
28784452-A-G 26638305-A-G ***
19302772-G-T 17190892-G-T ***
15779994-C-A 13668114-C-A ***
14729349-GA-G 12617417-GA-G ***
14953659-C-A 12841733-C-A ***
56833302-ATT-A,ACT ***
14421965-C-A 12301240-C-A ***
9398132-C-A 9560523-C-A ***
16763696-C-A 14651816-C-A ***
14772676-ATTTTT-A 12660745-ATTTTT-A 21×T***
56842750-A-C ***
3467394-C-A 3599353-C-A ***
22345136-G-A 20183250-G-A BY217578 DYZ19 ***
18215564-G-A 16103684-G-A ***
5186842-C-A 5318801-C-A ***
21946908-C-A 19785022-C-A ***
6861452-C-A 6993411-C-A ***
9771054-A-ATTT 9933445-A-ATTT 16×T***
18772455-C-A 16660575-C-A ***
5534955-AT-A 5666914-AT-A ***
13434534-C-A 11278858-C-A ***
7623774-TAA-T 7755733-TAA-T 11×A***
21961319-C-T 19799433-C-T ***
18857589-TTG-T 16745709-TTG-T ***
22345135-G-C 20183249-G-C DYZ19 ***
21087399-C-CA,CAA 18925513-C-CA,CAA 14×A***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 585978915656375185027436094
Used in age calculations915656375185027436094
Counts of SNPs1717
Variant counts last updated 2019-08-07 00:58:25.



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