Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > FGC20747 > FGC20764 > FGC20767

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
585612
19731739-G-A 17619859-G-A P5_Prx A*
13452080-T-C 11296404-T-C A*
7463819-G-A 7595778-G-A IR1_L A*
22224640-G-A 20062754-G-A DYZ19 A*
22265906-T-A 20104020-T-A DYZ19 A*
20743848-C-T 18581962-C-T P4_Prx A*
22291486-T-A 20129600-T-A DYZ19 A*
22305348-A-G 20143462-A-G DYZ19 A*
17989418-T-C 15877538-T-C P7_Prx YA*
22305461-G-A 20143575-G-A DYZ19 A*
6313085-C-CT 6445044-C-CT IR3_Dst A*
22314078-G-A 20152192-G-A DYZ19 A*
26002614-C-A 23856467-C-A P1_Y1 A*
13687282-G-T 11531606-G-T A*
9520689-A-C 9683080-A-C BY80141 +
21301839-T-G 19139953-T-G BY131881 YY+
21261617-T-G 19099731-T-G BY131538 YY+
14197055-G-A 12076349-G-A FGC61925 YY+
9505170-G-A 9667561-G-A BY80004 +
22270304-T-C 20108418-T-C BY214966 DYZ19 +
21676685-A-T 19514799-A-T BY134680 YY+
14010459-A-G 11889753-A-G BY92313 YY+
22178082-A-C 20016196-A-C BY138177 YY+
22471958-T-C 20310072-T-C BY222688 DYZ19 +
22474485-C-T 20312599-C-T BY53091 DYZ19 +
22476578-T-G 20314692-T-G BY223612 DYZ19 +
22476581-C-A 20314695-C-A DYZ19 +
14214640-C-T 12093934-C-T FGC40985 Y19373 YY+
16325768-G-T 14213888-G-T BY106919 YY+
14336357-C-T 12215652-C-T BY95013 YY+
15590835-C-G 13478955-C-G BY102747 YY+
16348838-C-G 14236958-C-G BY107144 YY+
16268665-A-G 14156785-A-G BY106545 YY+
4113995-A-G 4245954-A-G BY57991 +
17119859-T-C 15007979-T-C BY112452 YY+
3275055-G-A 3407014-G-A BY57526 +
16084705-A-C 13972825-A-C BY105647 Y+
6990975-C-A 7122934-C-A BY62761 YY+
18176765-G-A 16064885-G-A BY120638 YY+
22474519-T-G 20312633-T-G BY43968 DYZ19 +
7416142-C-G 7548101-C-G BY65100 YY+
22478703-G-C 20316817-G-C DYZ19 +
15463059-A-C 13351179-A-C BY101743 YY+
14967046-A-C 12855121-A-C BY98764 YY+
18934399-C-T 16822519-C-T BY55122 YY+
14878864-T-C 12766934-T-C BY98204 YY+
19007088-G-C 16895208-G-C BY125480 YY+
8217191-A-G 8349150-A-G BY70838 YY+
14656255-C-T 12544320-C-T Y20755 YY+
19383877-T-G 17271997-T-G BY128648 Y+
8360213-A-G 8492172-A-G BY71984 YY+
22476587-T-G 20314701-T-G BY223613 DYZ19 +
22137652-T-G 19975766-T-G BY137909 YY+
20519-G-T +
22474512-T-C 20312626-T-C BY43967 DYZ19 +
7334635-G-A 7466594-G-A A2305 FGC33938 YY+
22932991-C-T 20771105-C-T BY141847 YY+
8482968-G-C 8614927-G-C Y6424 YY+
13691587-G-T 11535911-G-T +
23845348-T-C 21683462-T-C BY148303 Y+
23780861-G-A 21618975-G-A BY157176 Y+
23607925-C-A 21446039-C-A YY+
14503091-G-A 12391296-G-A F19012 YY+
22436292-T-GA 20274406-T-GA DYZ19 *
24575462-G-A 22429315-G-A P3_t2 *
13669995-G-T 11514319-G-T *
22340540-T-G 20178654-T-G DYZ19 *
17793822-ATATCTATCTATC-A 15681942-ATATCTATCTATC-A 11×TATC*
13670021-C-G 11514345-C-G *
13670026-A-C 11514350-A-C *
16090351-G-A 13978471-G-A **
11016399-T-G **
15658034-C-A 13546154-C-A **
15619071-C-A 13507191-C-A **
15616676-G-A 13504796-G-A **
11009676-C-A **
11016343-A-C **
11016385-T-C **
15460419-A-G 13348539-A-G **
15302743-T-C 13190842-T-C **
15385660-C-A 13273780-C-A **
10991043-T-C **
15107523-G-GCA 12995610-G-GCA **
11016409-C-G **
11016476-C-A **
11026474-T-A **
11026490-T-A **
16191567-G-A 14079687-G-A **
15686852-A-G 13574972-A-G FT22198 **
10989633-T-C **
15775863-C-T 13663983-C-T **
15916485-A-C 13804605-A-C **
16095220-T-A 13983340-T-A **
16120291-G-T 14008411-G-T P8_Prx **
16026279-G-T 13914399-G-T **
16120310-C-A 14008430-C-A P8_Prx **
16012261-A-T 13900381-A-T **
16009862-G-C 13897982-G-C **
16003897-G-A 13892017-G-A **
15912054-T-A 13800174-T-A **
10984717-T-G **
14849017-A-G 12737083-A-G **
15903913-A-T 13792033-A-T **
15894623-A-C 13782743-A-C **
10985114-T-TCC **
10983497-A-AGTCCT **
15785738-T-C 13673858-T-C **
10989484-C-A **
15785727-C-A 13673847-C-A **
14863035-A-C 12751101-A-C **
13701183-G-T 11545507-G-T **
14718132-G-T 12606200-G-T **
13865738-C-A 11745032-C-A **
14007434-A-T 11886728-A-T **
13945337-C-A 11824631-C-A **
13937236-C-A 11816530-C-A **
13932654-A-G 11811948-A-G **
16305777-T-A 14193897-T-A **
13486670-T-A 11330994-T-A **
13486690-T-G 11331014-T-G **
13603089-A-T 11447413-A-T **
13624251-T-G 11468575-T-G **
13859739-G-A 11739033-G-A **
13486627-A-T 11330951-A-T **
13858160-T-A 11737454-T-A **
11672122-TGCAAC-T **
11672122-T-A **
11672114-A-G **
11667877-T-C FT31904 **
11666078-TA-T **
13701146-A-T 11545470-A-T **
11656939-A-C **
13701173-A-C 11545497-A-C **
13486654-G-A 11330978-G-A **
14029192-T-G 11908486-T-G **
13199314-T-A 11043638-T-A **
14380308-C-A 12259604-C-A **
13216621-G-T 11060945-G-T **
13248448-C-A 11092772-C-A **
14561791-C-A 12449992-C-A **
13707102-C-A 11551426-C-A **
13254491-C-A 11098815-C-A **
14549553-T-G 12437754-T-G **
14515729-T-A 12403930-T-A **
14422247-T-C 12301522-T-C **
14397542-C-A 12276838-C-A **
14369118-C-A 12248414-C-A **
13486603-C-T 11330927-C-T **
13255595-G-C 11099919-G-C **
13274520-G-T 11118844-G-T **
14226485-A-T 12105779-A-T **
13276835-C-A 11121159-C-A **
13293510-T-A 11137834-T-A **
14184409-A-T 12063703-A-T **
14175001-T-A 12054295-T-A **
13326252-C-A 11170576-C-A **
13482906-C-A 11327230-C-A **
14554572-C-A 12442773-C-A **
13859737-G-A 11739031-G-A **
16305820-G-A 14193940-G-A **
22476586-G-A 20314700-G-A DYZ19 **
23625387-G-A 21463501-G-A Y80197 **
23517182-AGTG-A 21355296-AGTG-A **
23460187-A-C 21298301-A-C **
23439054-A-C 21277168-A-C 10×T**
23358935-G-C 21197049-G-C **
23202808-G-T 21040922-G-T **
23199748-C-A 21037862-C-A **
22970122-A-G 20808236-A-G **
22659537-A-T 20497651-A-T **
22658999-C-A 20497113-C-A **
22587143-G-A 20425257-G-A **
22474789-T-A 20312903-T-A DYZ19 **
24407247-G-T 22261100-G-T **
22446648-T-G 20284762-T-G DYZ19 **
22436201-T-A 20274315-T-A DYZ19 **
22436186-T-A 20274300-T-A DYZ19 **
22436164-A-T 20274278-A-T DYZ19 **
22436147-T-A 20274261-T-A DYZ19 **
22360490-A-T 20198604-A-T DYZ19 **
22360428-A-T 20198542-A-T DYZ19 **
22029989-A-C 19868103-A-C **
21824512-T-G 19662626-T-G **
21818836-C-A 19656950-C-A **
21691828-C-A 19529942-C-A **
23742358-G-T 21580472-G-T **
24485368-C-T 22339221-C-T **
21617669-T-A 19455783-T-A **
28645948-A-C 26499801-A-C **
24709-T-G **
24690-A-T **
6891-CAAGAATG-C **
56842326-C-A **
56841881-T-A **
56841852-T-A **
56825664-C-T **
56728441-T-A **
28720722-T-A 26574575-T-A **
28679150-C-A 26533003-C-A **
28656991-C-A 26510844-C-A **
28622011-G-A 26475864-G-A **
25201134-G-A 23054987-G-A g1 **
28622010-T-C 26475863-T-C **
28622008-G-A 26475861-G-A **
28558369-C-A 26412222-C-A **
28521663-C-G 26375516-C-G **
28510934-T-G 26364787-T-G **
28486057-C-T 26339910-C-T **
28008318-G-T 25862171-G-T P1_Y2 **
27733665-C-A 25587518-C-A P1_Y2 **
26393974-A-C 24247827-A-C P1_Y1 **
26124464-G-C 23978317-G-C P1_Y1 **
25954062-G-T 23807915-G-T P1_Y1 **
25302668-T-C 23156521-T-C P2_r1 **
21682273-C-A 19520387-C-A **
21387209-C-A 19225323-C-A **
16430268-C-A 14318388-C-A **
17589216-A-G 15477336-A-G **
18398177-A-T 16286297-A-T P6_Gap **
18384371-T-A 16272491-T-A P6_Gap **
18308726-C-A 16196846-C-A P6_Prx **
18308704-C-A 16196824-C-A P6_Prx **
18308691-C-A 16196811-C-A P6_Prx **
18263950-T-A 16152070-T-A **
18174857-T-A 16062977-T-A **
17923449-GAAG-A 15811569-GAAG-A **
10975348-C-A **
17654847-G-A 15542967-G-A **
17597749-A-C 15485869-A-C **
17545476-A-C 15433596-A-C **
18653478-T-G 16541598-T-G **
17544836-C-A 15432956-C-A **
17535044-G-T 15423164-G-T **
17374495-G-T 15262615-G-T **
17318377-T-G 15206497-T-G **
17318362-G-C 15206482-G-C **
17181594-T-C 15069714-T-C **
17135757-A-T 15023877-A-T **
16926964-C-A 14815084-C-A **
16535979-C-A 14424099-C-A **
16507055-T-A 14395175-T-A **
16450345-T-C 14338465-T-C FT22725 **
18558203-C-A 16446323-C-A **
18685482-C-A 16573602-C-A **
21337859-C-A 19175973-C-A **
20199921-A-G 18038035-A-G P5_Dst **
21139300-G-A 18977414-G-A **
20950450-C-A 18788564-C-A P4_Dst **
20888661-T-A 18726775-T-A P4_Dst **
20888647-A-T 18726761-A-T P4_Dst **
20850694-TA-T 18688808-TA-T P4_Dst **
20424747-G-T 18262861-G-T P5_Dst **
20246844-T-A 18084958-T-A P5_Dst **
20246787-T-A 18084901-T-A P5_Dst **
20246784-T-A 18084898-T-A P5_Dst **
20246773-T-A 18084887-T-A P5_Dst **
20246754-G-C 18084868-G-C P5_Dst **
19551912-A-C 17440032-A-C **
18707841-A-C 16595961-A-C **
19546408-T-A 17434528-T-A **
19529237-C-A 17417357-C-A **
19370100-C-A 17258220-C-A **
19333362-A-C 17221482-A-C **
19303221-C-A 17191341-C-A **
19270623-C-A 17158743-C-A **
19009233-C-A 16897353-C-A **
18972962-T-A 16861082-T-A **
18910964-A-G 16799084-A-G **
18880066-T-A 16768186-T-A **
18867325-T-G 16755445-T-G **
18753563-C-A 16641683-C-A **
10975717-T-A **
10983502-A-T **
10972355-A-T **
22436172-T-A 20274286-T-A DYZ19 **
23126677-C-A 20964791-C-A **
10032311-G-T 10194702-G-T **
13271720-C-A 11116044-C-A **
13254528-A-T 11098852-A-T **
23306654-C-A 21144768-C-A **
10764778-C-A **
7551710-G-T 7683669-G-T **
7166593-G-T 7298552-G-T **
21021214-T-TA 18859328-T-TA P4_Dst **
13601915-C-A 11446239-C-A **
10858522-A-G **
10796699-T-TTGCAC **
11033272-C-A **
13461013-T-G 11305337-T-G **
13329237-G-T 11173561-G-T **
6516432-C-A 6648391-C-A **
13937239-C-A 11816533-C-A **
6434531-C-A 6566490-C-A **
22204449-G-T 20042563-G-T **
14807306-T-G 12695377-T-G **
10888650-C-G **
13870502-C-A 11749796-C-A **
22114767-C-A 19952881-C-A **
14421837-C-A 12301112-C-A **
10961215-T-G **
56843426-C-A **
10790476-C-A **
6147551-C-A 6279510-C-A IR3_Dst **
28622018-A-G 26475871-A-G **
13223405-AG-A 11067729-AG-A **
13886009-C-A 11765303-C-A **
3016428-T-A 3148387-T-A **
3012120-C-A 3144079-C-A **
2845849-A-C 2977808-A-C **
2793014-C-A 2924973-C-A **
21262236-C-A 19100350-C-A **
13939029-C-A 11818323-C-A **
24523481-C-A 22377334-C-A **
10965401-C-G **
10823973-T-A **
10994789-C-A **
3501039-C-A 3632998-C-A **
13576151-T-C 11420475-T-C **
19088154-C-A 16976274-C-A **
7188404-C-A 7320363-C-A **
8710123-C-A 8842082-C-A **
4460694-C-A 4592653-C-A **
21151768-C-A 18989882-C-A **
19113722-CTA-C 17001842-CTA-C **
23256243-T-G 21094357-T-G **
27906797-G-T 25760650-G-T P1_Y2 **
21187137-C-A 19025251-C-A **
20579322-CAT-C 18417436-CAT-C P5_Dst **
15450197-C-A 13338317-C-A **
14688869-C-A 12576935-C-A **
13859749-T-G 11739043-T-G **
10691195-T-A **
7241121-C-A 7373080-C-A **
13223453-G-GAGGAA 11067777-G-GAGGAA **
13223402-G-GA 11067726-G-GA **
3150152-T-C 3282111-T-C **
10983967-T-G **
15497460-C-A 13385580-C-A **
13859742-A-C 11739036-A-C **
10983968-T-G **
10983922-C-T **
21346269-C-A 19184383-C-A **
13576150-G-C 11420474-G-C **
23315957-C-A 21154071-C-A **
10982300-C-A **
9437310-C-G 9599701-C-G **
8058656-C-A 8190615-C-A **
28622005-A-T 26475858-A-T **
28792405-G-T 26646258-G-T **
17951027-C-A 15839147-C-A **
4389529-C-A 4521488-C-A **
10772727-T-A **
3854277-C-A 3986236-C-A **
17492120-C-A 15380240-C-A **
15844879-C-A 13732999-C-A **
2745822-C-A 2877781-C-A **
20802741-C-A 18640855-C-A P4_Gap **
18926872-CAAAAAA-C 16814992-CAAAAAA-C 17×A**
16919244-A-T 14807364-A-T **
17301276-G-T 15189396-G-T **
19482077-C-A 17370197-C-A FGC60430 **
58990603-G-T 56844456-G-T F14124 **
24386482-CTA-C 22240335-CTA-C **
13701139-C-G 11545463-C-G **
11644911-C-A **
10746815-G-T **
13223383-A-G 11067707-A-G **
18106644-C-A 15994764-C-A **
10975724-G-T **
7142831-C-A 7274790-C-A **
14422245-A-C 12301520-A-C **
21127436-C-A 18965550-C-A **
10792595-C-A **
10818700-C-T **
15107525-ATT-A 12995612-ATT-A **
10961153-G-C **
10744593-C-A **
19258880-C-A 17147000-C-A FT58435 **
15433510-C-A 13321630-C-A **
10858525-C-T **
20655141-G-T 18493255-G-T P4_Prx **
7470734-C-A 7602693-C-A IR1_L **
21164742-C-A 19002856-C-A **
21526890-C-A 19365004-C-A **
5200698-G-T 5332657-G-T **
10686613-C-G **
10686611-C-G **
10818683-A-G **
3836880-C-A 3968839-C-A **
2795085-C-A 2927044-C-A **
14989121-C-A 12877187-C-A **
4888725-C-A 5020684-C-A **
13486646-C-A 11330970-C-A **
10924758-C-A **
4408497-C-A 4540456-C-A **
14614599-C-A 12502797-C-A **
3107953-G-T 3239912-G-T **
24732-T-G **
3546449-TTGC-T 3678408-TTGC-T **
8988682-G-T 9151073-G-T **
10858491-T-G **
9936509-C-A 10098900-C-A **
9830820-T-A 9993211-T-A **
9596055-T-A 9758446-T-A IR3_Prx **
9521391-G-T 9683782-G-T **
9511852-A-C 9674243-A-C **
9493168-A-T 9655559-A-T **
10858510-A-ATCCAC **
10858532-C-G **
10865355-T-C **
10866957-C-A **
8854163-C-A 8986122-C-A **
10032170-C-A 10194561-C-A **
8850172-C-A 8982131-C-A **
8785419-A-C 8917378-A-C **
8762072-C-A 8894031-C-A **
8735521-C-A 8867480-C-A **
8735246-C-A 8867205-C-A **
8699355-A-C 8831314-A-C **
8389610-T-A 8521569-T-A **
10869121-T-G **
10872201-C-A **
10846560-G-C **
10879642-C-A **
9959234-T-A 10121625-T-A **
10858479-A-C **
8075779-C-A 8207738-C-A **
10789294-T-G **
10840402-C-A **
10834825-C-A **
10823956-G-C **
10846692-T-G **
10823936-T-A **
10823922-A-C **
10822810-C-G **
10810713-T-A **
10805476-C-A **
10796287-C-A **
10858462-T-TCACGC **
10781640-C-T FT31902 **
10051185-C-A 10213576-C-A **
10779281-C-A **
10764779-A-T **
10758055-C-T **
10757485-C-A **
10858473-C-G **
10690583-C-A **
10673656-C-A **
10673182-C-A **
10659542-C-A **
10659532-C-CTCTAA **
10652801-G-T **
8213936-C-A 8345895-C-A **
8273603-T-C 8405562-T-C **
7867997-G-C 7999956-G-C **
4925404-T-A 5057363-T-A **
7829665-C-A 7961624-C-A **
5817999-T-A 5949958-T-A **
5577305-C-G 5709264-C-G **
5219544-A-T 5351503-A-T **
5213964-A-T 5345923-A-T **
10924056-T-A **
5199305-C-A 5331264-C-A **
5186618-T-A 5318577-T-A **
10930237-T-A **
5172216-A-T 5304175-A-T **
5056161-T-C 5188120-T-C **
4918816-G-T 5050775-G-T **
10924001-T-A **
4908308-C-A 5040267-C-A **
4871977-C-A 5003936-C-A **
4256919-T-G 4388878-T-G **
4256894-A-C 4388853-A-C **
4168861-C-A 4300820-C-A **
10938822-G-T **
4107944-T-C 4239903-T-C **
10954772-A-G **
10961159-T-G **
4065719-A-G 4197678-A-G **
10965300-A-T **
3621309-G-T 3753268-G-T **
6037748-A-C 6169707-A-C **
6037723-T-G 6169682-T-G **
6037764-A-T 6169723-A-T **
7099865-A-T 7231824-A-T **
7762145-C-A 7894104-C-A **
7759242-T-G 7891201-T-G **
7649050-T-C 7781009-T-C **
7437371-G-C 7569330-G-C **
7428393-G-A 7560352-G-A **
10885582-G-C **
7257186-T-G 7389145-T-G **
6086899-G-T 6218858-G-T **
7113757-G-A 7245716-G-A **
7224185-A-T 7356144-A-T **
10885763-T-A **
7009283-C-A 7141242-C-A **
10923953-T-A **
6767815-C-T 6899774-C-T **
6903643-C-A 7035602-C-A **
7000536-C-A 7132495-C-A **
10841003-CT-C **
10888636-T-A **
7019195-C-A 7151154-C-A **
7044199-C-T 7176158-C-T **
11007463-C-A ***
8013417-C-A 8145376-C-A ***
56832956-T-TTCAAC ***
28536102-A-G 26389955-A-G ***
28536123-T-G 26389976-T-G ***
13474021-C-A 11318345-C-A ***
10877835-CTCCAT-C ***
18125730-G-GGAAA 16013850-G-GGAAA A937 6×GAAA***
14286784-CTTTTTTTT-C 12166078-CTTTTTTTT-C 22×T***
18907711-G-T 16795831-G-T FGC11226FGC11237 ***
11033855-C-A ***
9063042-G-T 9225433-G-T ***
23563647-C-A 21401761-C-A ***
18218936-TATAATA-T 16107056-TATAATA-T 8×ATA***
19466852-C-A 17354972-C-A ***
15781602-C-A 13669722-C-A ***
10687984-C-A ***
23475996-C-A 21314110-C-A ***
14953371-C-A 12841445-C-A ***
14418109-C-A 12297406-C-A ***
16354521-C-A 14242641-C-A ***
8217063-CTTCTCCTCTCAT-C 8349022-CTTCTCCTCTCAT-C ***
16475447-C-T 14363567-C-T ***
2862892-CAAAAAA-C,CAAAAAAA 2994851-CAAAAAA-C,CAAAAAAA 18×A***
2881483-C-T 3013442-C-T ***
16736832-C-A 14624952-C-A ***
3847094-C-A 3979053-C-A ***
17300539-TG-T 15188659-TG-T ***
15510543-C-A 13398663-C-A ***
21085779-CAA-C,CA 18923893-CAA-C,CA 24×A***
23447061-C-A 21285175-C-A ***
9420207-G-A 9582598-G-A ***
23068243-C-A 20906357-C-A ***
9945436-G-T 10107827-G-T ***
3833652-CA-C,CAA 3965611-CA-C,CAA 16×A***
15158628-C-A 13046714-C-A ***
7040158-G-T 7172117-G-T ***
22505886-C-A 20344000-C-A DYZ19 ***
17171114-GA-G,GAA 15059234-GA-G,GAA 11×A***
14590433-C-A 12478633-C-A ***
9041872-C-A 9204263-C-A ***
9124428-G-T ***
21316698-C-A 19154812-C-A ***
14576338-C-A 12464538-C-A ***
23773323-TACACAC-T,TAC 21611437-TACACAC-T,TAC 24×AC***
21196291-C-A 19034405-C-A ***
17878320-CA-C 15766440-CA-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 585612935940676613007577323
Used in age calculations935940676613007577323
Counts of SNPs3433
Variant counts last updated 2019-08-07 00:58:19.



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