Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > ZZ39 > Z229 > Y16019 > Y16018

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
B73122
24351895-T-G 22205748-T-G P3_t1 A*
22292023-G-A 20130137-G-A DYZ19 A*
13449806-T-G 11294130-T-G A*
19718770-C-G 17606890-C-G P5_Prx A*
13448509-C-G 11292833-C-G A*
19690439-G-C 17578559-G-C P5_Prx A*
19589257-G-A 17477377-G-A P5_Prx YA*
28817774-G-A 26671627-G-A A*
6170605-T-C 6302564-T-C IR3_Dst A*
22309713-T-G 20147827-T-G DYZ19 A*
26035564-C-T 23889417-C-T P1_Y1 A*
12834-T-A +
17803697-G-A 15691817-G-A BY117497 YY+
17141668-A-G 15029788-A-G BY112609 YY+
17795233-T-C 15683353-T-C BY117454 YY+
17703829-A-G 15591949-A-G BY116787 YY+
17976317-G-T 15864437-G-T BY118876 Y+
19010660-CA-C 16898780-CA-C +
18130148-T-A 16018268-T-A BY120337 YY+
18839164-A-G 16727284-A-G BY124247 YY+
18871424-G-A 16759544-G-A BY124418 YY+
19381082-T-C 17269202-T-C BY128627 YY+
19398321-C-T 17286441-C-T BY47216 YY+
19524905-G-C 17413025-G-C BY129789 YY+
19535493-G-A 17423613-G-A BY129876 YY+
17129694-T-C 15017814-T-C BY112501 YY+
2887279-C-G 3019238-C-G L1088 YY+
16904664-CAAAAAAAAAAAAAAAAAAAAAAAAA-C 14792784-CAAAAAAAAAAAAAAAAAAAAAAAAA-C 40×A+
8315172-A-G 8447131-A-G BY71634 YY+
6932881-G-C 7064840-G-C FGC11312FGC11316 YY+
13823308-G-A 11702602-G-A BY90614 +
14234315-G-A 12113609-G-A BY94146 YY+
14248683-G-T 12127977-G-T BY156423 YY+
9906945-G-A 10069336-G-A BY81980 Y+
9791286-A-C 9953677-A-C BY81023 Y+
9403901-C-T 9566292-C-T BY79246 YY+
15122797-C-T 13010884-C-T BY99790 YY+
16900652-T-C 14788772-T-C BY110951 YY+
7890118-CCTTAG-A 8022077-CCTTAG-A +
7849917-C-T 7981876-C-T BY68209 YY+
7817579-T-TA 7949538-T-TA +
6359682-A-C 6491641-A-C BY59777 +
16327150-G-C 14215270-G-C BY106932 YY+
16445242-G-A 14333362-G-A BY107838 YY+
22026031-G-T 19864145-G-T BY137162 YY+
16731672-C-A 14619792-C-A BY109650 YY+
21898210-A-C 19736324-A-C BY136304 YY+
16898606-GCATATA-G 14786726-GCATATA-G +
2887280-C-G 3019239-C-G BY177516 YY+
23538941-G-C 21377055-G-C BY146062 YY+
23184115-G-T 21022229-G-T BY143628 Y+
22435460-G-A 20273574-G-A DYZ19 *
18419713-TTGTG-T 16307833-TTGTG-T P6_Gap 16×TG*
3718943-G-A 3850902-G-A BY57842 *
6861230-TTTTCTTTCTTTCTTTC-T 6993189-TTTTCTTTCTTTCTTTC-T 17×TTTC*
3407002-A-G 3538961-A-G *
3719534-G-TTT 3851493-G-TTT *
22315675-T-A 20153789-T-A DYZ19 *
3680694-C-A 3812653-C-A *
56842940-A-G **
14226478-G-A 12105772-G-A **
14052053-A-C 11931347-A-C **
14051975-C-A 11931269-C-A **
22069725-C-A 19907839-C-A **
13997661-G-T 11876955-G-T **
13950281-G-T 11829575-G-T **
13913864-G-A 11793158-G-A **
13913194-G-A 11792488-G-A **
13913178-C-A 11792472-C-A **
13909259-C-A 11788553-C-A **
13857280-T-A 11736574-T-A **
56842939-G-T **
56838992-G-T **
14285786-A-G 12165080-A-G **
14352882-C-A 12232177-C-A **
14373753-T-A 12253049-T-A **
56838806-A-C **
14714910-C-A 12602977-C-A **
14760930-G-T 12648999-G-T **
14795063-T-G 12683134-T-G **
14912979-T-G 12801046-T-G **
14934474-GT-G 12822539-GT-G **
14960308-G-A 12848383-G-A **
56830360-TTCTGC-T **
15309754-A-AT 13197859-A-AT **
15475043-A-C 13363163-A-C **
56830336-TC-T **
56830329-ACTCC-A **
13856185-T-A 11735479-T-A **
13718528-A-T 11562852-A-T **
13804071-G-T 11683365-G-T **
11030748-A-T **
11006108-AT-A **
11006131-T-C **
11009394-C-G **
11011543-A-C **
11011560-G-C **
11013528-C-G **
11013564-C-G **
11013607-C-G **
11013623-C-G **
11025370-T-A **
11025376-G-T **
11030258-C-G **
11030260-G-C **
11030297-CA-C **
11037979-A-C **
11667918-G-T **
13263032-C-T 11107356-C-T **
13311064-C-A 11155388-C-A **
13422516-A-AGT 11266840-A-AGT **
13461583-C-A 11305907-C-A **
13466469-C-G 11310793-C-G **
13469602-T-A 11313926-T-A **
13473782-T-C 11318106-T-C **
13473789-C-T 11318113-C-T **
13473800-T-A 11318124-T-A **
13486755-C-A 11331079-C-A **
13627226-C-A 11471550-C-A **
13718526-G-T 11562850-G-T **
15527812-ATTTATTTATTATTATTTT-A 13415932-ATTTATTTATTATTATTTT-A **
13734630-C-G 11578954-C-G **
56830292-C-A **
15881932-G-C 13770052-G-C **
15767121-A-G 13655241-A-G **
19312269-T-A 17200389-T-A **
23831302-C-A 21669416-C-A **
23514393-G-T 21352507-G-T **
17813477-G-A 15701597-G-A **
23311314-C-A 21149428-C-A **
18256323-C-A 16144443-C-A BY207766 **
18736568-C-A 16624688-C-A **
18751546-C-A 16639666-C-A **
23126180-C-A 20964294-C-A **
23051609-G-T 20889723-G-T **
18933935-C-A 16822055-C-A **
18987149-C-A 16875269-C-A **
22951341-C-T 20789455-C-T **
19071747-G-A 16959867-G-A **
19202877-A-C 17090997-A-C **
22896054-C-A 20734168-C-A **
17666498-C-A 15554618-C-A **
20698979-T-G 18537093-T-G P4_Prx **
21939556-A-C 19777670-A-C **
22235133-A-G 20073247-A-G DYZ19 **
21320291-C-A 19158405-C-A **
21084424-TA-T 18922538-TA-T **
20948724-C-A 18786838-C-A P4_Dst **
20948708-A-T 18786822-A-T P4_Dst **
20470162-C-A 18308276-C-A P5_Dst **
22882817-C-A 20720931-C-A **
20459122-G-T 18297236-G-T P5_Dst **
22529637-C-A 20367751-C-A A15847 **
22722461-C-A 20560575-C-A **
22782692-C-A 20620806-C-A **
19423116-C-A 17311236-C-A **
19416883-C-A 17305003-C-A **
17703370-T-C 15591490-T-C **
17568255-G-A 15456375-G-A **
15844672-G-A 13732792-G-A **
16588460-T-G 14476580-T-G **
15862479-C-T 13750599-C-T **
22207308-C-A 20045422-C-A **
15881942-C-T 13770062-C-T **
28772896-C-A 26626749-C-A **
28674806-C-A 26528659-C-A **
16059128-C-A 13947248-C-A **
16060323-C-A 13948443-C-A **
16093004-C-A 13981124-C-A **
16171491-G-T 14059611-G-T **
16274178-G-T 14162298-G-T **
27616543-G-T 25470396-G-T P1_Y2 **
16432888-C-A 14321008-C-A **
26716303-C-A 24570156-C-A P1_g2 **
16475383-A-G 14363503-A-G **
16623757-A-T 14511877-A-T **
17377577-C-A 15265697-C-A **
11006087-C-G **
23855852-A-AT 21693966-A-AT 8×T**
23952997-G-C 21806850-G-C **
17095550-G-T 14983670-G-T **
17092768-G-T 14980888-G-T **
24416865-C-A 22270718-C-A **
24422581-G-C 22276434-G-C **
16881615-G-T 14769735-G-T FT24585 **
16703566-G-T 14591686-G-T **
16871269-C-T 14759389-C-T **
16777773-C-A 14665893-C-A **
25733034-GTTT-G 23586887-GTTT-G P1_b3 17×T**
16720072-C-A 14608192-C-A **
16708806-G-T 14596926-G-T **
25954084-C-CTTTA 23807937-C-CTTTA P1_Y1 **
11006088-A-AATATG **
14050745-C-A 11930039-C-A **
11005659-C-A **
10894344-G-T **
4701475-G-T 4833434-G-T **
10942882-C-A **
11013558-C-A **
13326243-C-A 11170567-C-A **
10793271-A-G **
10793264-C-A **
10793236-A-G **
10820776-C-T **
10989590-G-A **
16719752-T-C 14607872-T-C **
14187279-C-A 12066573-C-A **
11006067-C-A **
15680311-C-A 13568431-C-A **
5022781-C-A 5154740-C-A **
19375490-G-T 17263610-G-T **
22949830-C-A 20787944-C-A **
3346235-T-C 3478194-T-C **
10672943-T-TTTTC **
7567962-G-A 7699921-G-A **
19044567-C-A 16932687-C-A **
10761174-A-C **
10761170-T-G **
10840015-T-C **
23184768-C-A 21022882-C-A **
10745320-G-T **
11013592-G-C **
11013567-A-T **
10994841-C-A **
10827967-C-A **
10988031-C-A **
15412872-C-A 13300992-C-A **
10958528-T-C **
10893933-C-T **
23013805-C-A 20851919-C-A **
18547180-C-A 16435300-C-A **
14144075-C-A 12023369-C-A **
13857292-T-G 11736586-T-G **
10922172-CCACCT-C **
10761211-A-C **
14451211-G-A 12330484-G-A **
10988038-C-T **
10988026-C-T **
10988017-T-C **
16199743-C-A 14087863-C-A **
10689163-C-A **
22522436-C-A 20360550-C-A **
10893191-G-T **
23025261-G-T 20863375-G-T **
11013525-T-C **
11030262-T-G **
13141970-C-A 10631456-C-A **
13474524-G-C 11318848-G-C **
22297873-C-A 20135987-C-A DYZ19 **
19744991-ATTT-A 17633111-ATTT-A P5_Prx 23×T**
59030527-C-G 56884380-C-G **
15742434-G-C 13630554-G-C CTS4638 PF2229 **
18566174-C-A 16454294-C-A **
11013541-A-G **
6918573-T-A 7050532-T-A **
10761197-G-T **
14033933-C-A 11913227-C-A **
13857270-A-T 11736564-A-T **
7080712-C-A 7212671-C-A **
56851591-G-T **
17079116-C-A 14967236-C-A **
13305580-C-A 11149904-C-A **
5887632-C-A 6019591-C-A **
19575854-A-T 17463974-A-T P5_Prx **
11013551-A-T **
10906109-C-T **
9973342-C-A 10135733-C-A **
13593785-C-A 11438109-C-A **
10983905-C-A **
11030275-A-T **
10673398-GTTCCA-G **
13466445-G-T 11310769-G-T **
10761188-T-C **
16221531-C-A 14109651-C-A **
15202463-T-C 13090549-T-C **
10827958-T-A **
10886661-C-A FGC78489 **
10878090-C-A **
10872521-C-A **
10872459-T-C **
10869917-C-A **
10860231-C-A **
10831365-C-A **
10827952-T-C **
10893208-C-T **
10826679-C-G **
10822973-A-C **
10806659-T-G **
10777411-T-C **
2810399-C-A 2942358-C-A **
10761063-C-CTTTGA **
10755168-G-T **
10893204-T-A **
10895358-C-A **
10745860-C-A **
10969047-T-G **
10990026-C-CACTAT **
10988797-C-A **
10975828-C-G **
10975525-C-G **
10975515-C-T **
10974002-C-CATTTA **
10973414-C-A **
10955290-C-CTGTTG **
10895449-C-A **
10955271-CA-C **
10952947-C-A **
10947532-C-A **
10922152-CCACCT-C **
10922142-C-T **
10922107-C-G **
10912800-T-C **
10901001-C-T **
10746168-C-A **
10987739-C-A **
10689158-C-A **
5314107-G-T 5446066-G-T **
9113902-G-T **
10689157-C-A **
7184954-C-A 7316913-C-A **
6534779-C-A 6666738-C-A **
6533750-C-A 6665709-C-A **
6490810-T-G 6622769-T-G **
5530833-C-A 5662792-C-A **
5022828-C-A 5154787-C-A **
9560136-T-A 9722527-T-A IR3_Prx **
4813242-C-A 4945201-C-A **
4769163-G-A 4901122-G-A **
4709431-C-T 4841390-C-T **
4179182-G-A 4311141-G-A **
3602495-C-A 3734454-C-A **
3308529-T-A 3440488-T-A **
3091699-G-T 3223658-G-T **
2948046-C-A 3080005-C-A **
9119320-C-A **
9109659-G-T **
10668932-C-A **
10093850-C-G 10256241-C-G **
10687134-A-T **
10673536-C-A **
9944009-G-T 10106400-G-T **
10902395-C-A ***
17170422-G-T 15058542-G-T ***
17170427-C-T 15058547-C-T ***
17170428-A-G 15058548-A-G ***
6119582-C-A 6251541-C-A ***
21737974-G-GAA 19576088-G-GAA 12×A***
22301162-T-C 20139276-T-C DYZ19 ***
17170431-C-T 15058551-C-T ***
7722914-C-A 7854873-C-A ***
10769386-AT-A ***
10769390-C-CA ***
16889903-C-A 14778023-C-A ***
10754954-T-A,TG ***
15395049-C-A 13283169-C-A ***
56844740-CAT-C ***
6631832-C-G 6763791-C-G ***
9959436-T-TTAATTTAATCACATGTGTTCTA 10121827-T-TTAATTTAATCACATGTGTTCTA ***
7699133-C-A 7831092-C-A ***
10889765-C-A ***
9371527-C-A 9533918-C-A ***
22475675-G-A 20313789-G-A DYZ19 ***
10911661-C-G ***
10808594-TC-T ***
10776082-C-CTATAT ***
18923342-GTTTT-G,GTTT 16811462-GTTTT-G,GTTT 18×T***
10024119-C-A 10186510-C-A ***
22173954-GAAA-G,GAA 20012068-GAAA-G,GAA 16×A***
21754375-T-C ***
8822791-C-A 8954750-C-A ***
8431228-CTTTTTTTT-C,CTTTTTT 8563187-CTTTTTTTT-C,CTTTTTT 17×T***
8080759-T-C 8212718-T-C Y30554 ***
56827953-T-A ***
7986280-G-T 8118239-G-T ***
23745425-TG-T 21583539-TG-T ***
16703715-G-T 14591835-G-T ***
7981780-C-A 8113739-C-A ***
21731175-C-A 19569289-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B73122951703577724357670090
Used in age calculations951703577724357670090
Counts of SNPs3328
Variant counts last updated 2019-07-19 21:32:57.



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