Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > S5488 > Z16294 > BY11121 > ZZ21 > BY32772

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY2
249198
19643275-A-G 17531395-A-G P5_Prx A*
16408114-C-CCA 14296234-C-CCA 19×CAA*
18276381-C-G 16164501-C-G P6_Prx A*
24246213-A-T 22100066-A-T P3_b1 A*
22441411-G-T 20279525-G-T BY219017 DYZ19 A*
19663767-G-C 17551887-G-C P5_Prx A*
20757873-T-G 18595987-T-G P4_Prx A*
20749537-T-A 18587651-T-A P4_Prx A*
16881091-G-A 14769211-G-A Y131923 YY+
19389828-T-A 17277948-T-A Y131910 Y+
17133569-G-A 15021689-G-A Y131913 YY+
20113877-C-T 18001997-C-T P5_Dst +
19068722-G-A 16956842-G-A A2009 YY+
21193460-T-C 19031574-T-C Y131912 YY+
21483295-C-G 19321409-C-G BY133272 YY+
17745054-G-C 15633174-G-C Y131928 YY+
15989293-A-G 13877413-A-G Y131907 YY+
21733824-C-T 19571938-C-T Y131921 YY+
15899789-A-G 13787909-A-G Y131906 YY+
21892880-G-C 19730994-G-C Y131929 YY+
22119437-C-G 19957551-C-G Y131926 YY+
22162624-TTAA-T 20000738-TTAA-T +
14821212-G-T 12709279-G-T Y92275 YY+
22076577-C-A 19914691-C-A M7067 YY+
24499883-A-G 22353736-A-G BY150372 +
22471430-C-T 20309544-C-T DYZ19 +
7964088-A-G 8096047-A-G Y131931 YY+
7746041-A-G 7878000-A-G Y131948 YY+
22609439-G-A 20447553-G-A BY139488 YY+
14336464-T-C 12215759-T-C Y131918 YY+
22294351-T-A 20132465-T-A FGC65779BY43768 DYZ19 +
8190243-A-G 8322202-A-G Y131932 YY+
14051627-T-C 11930921-T-C Y131951 YY+
22224921-A-G 20063035-A-G BY46076 DYZ19 *
19546658-CATCT-C 17434778-CATCT-C 4×ATCT*
22320055-T-C 20158169-T-C DYZ19 *
13844018-AGGAAT-A 11723312-AGGAAT-A 11×GGAAT*
22234008-C-T 20072122-C-T DYZ19 *
13522119-G-T 11366443-G-T **
10982713-C-A **
13585173-C-A 11429497-C-A **
11038107-TTCCAC-T **
10978599-T-C **
10993304-A-AT **
10965585-A-C **
10965565-A-G **
13708724-G-T 11553048-G-T **
10965555-A-T **
10965542-T-A **
10965595-A-G **
11000839-C-A **
10993330-T-G **
11027615-C-A **
11032579-C-A **
11031705-C-A **
11031686-C-A **
13217620-C-A 11061944-C-A **
13239423-C-G 11083747-C-G **
11031008-C-A **
13242758-C-A 11087082-C-A F10626 **
10993343-AC-A **
11024916-T-G **
11021439-T-TCAACTCCAC **
11021431-C-A **
11019119-CTTTCCA-C **
13409436-A-G 11253760-A-G **
11013697-A-T **
10993346-G-GTCATTC **
10965536-C-T **
56870068-C-A **
10962946-T-A **
10656139-C-T **
10775056-C-T **
10771955-A-T **
10770547-C-G **
10678141-C-A **
10673560-T-G **
10662634-C-T **
10656636-C-A **
10026216-G-T 10188607-G-T **
10786244-A-G **
9989985-A-G 10152376-A-G **
9030236-C-T 9192627-C-T **
8842347-C-A 8974306-C-A **
3157728-G-A 3289687-G-A **
8649999-G-T 8781958-G-T **
8140383-A-C 8272342-A-C **
7152798-C-A 7284757-C-A **
7078562-A-G 7210521-A-G **
10785770-C-G **
10800919-C-A **
10958598-T-C **
10899965-C-CTTTG **
10958595-C-A **
10958528-T-C **
10958524-TT-C **
10949563-C-A **
10937806-A-T **
10925600-A-T **
10900014-T-G **
10899981-C-A **
11648982-A-C **
10807814-C-A **
10880337-C-CAACCA **
10864084-C-A **
10842363-C-A **
10839030-C-T **
10836541-C-G **
10825663-A-T **
10825261-ATTCCG-A **
10822128-A-G **
13725081-G-T 11569405-G-T **
15288619-AATTTAGACTATAAAATTAAATT-A 13176718-AATTTAGACTATAAAATTAAATT-A **
13896199-C-T 11775493-C-T **
21334755-G-T 19172869-G-T **
21851210-G-T 19689324-G-T **
21821257-C-T 19659371-C-T **
21785942-C-A 19624056-C-A **
21738655-C-A 19576769-C-A **
21635270-C-A 19473384-C-A **
21545450-ATTT-A 19383564-ATTT-A **
21464457-A-C 19302571-A-C **
21283470-C-A 19121584-C-A **
22076233-T-A 19914347-T-A **
21152503-C-A 18990617-C-A **
21097333-A-G 18935447-A-G **
19683836-C-A 17571956-C-A P5_Prx **
19558123-C-A 17446243-C-A **
19254438-A-C 17142558-A-C **
19216407-C-A 17104527-C-A **
19206773-AAG-A 17094893-AAG-A **
21888131-A-C 19726245-A-C **
22097110-C-A 19935224-C-A **
18794179-C-A 16682299-C-A **
23869801-C-A 21707915-C-A **
56825718-G-T **
28776674-C-G 26630527-C-G **
28653211-C-A 26507064-C-A **
28602072-C-A 26455925-C-A **
28600345-G-A 26454198-G-A **
27971773-AAG-A 25825626-AAG-A P1_Y2 **
25521053-T-C 23374906-T-C P1_gr1 **
23818041-C-T 21656155-C-T **
22210511-G-A 20048625-G-A **
22842176-A-C 20680290-A-C **
22579972-ATTAT-A 20418086-ATTAT-A **
22537038-C-A 20375152-C-A **
22353444-C-T 20191558-C-T DYZ19 **
22342201-T-G 20180315-T-G DYZ19 **
22342120-G-A 20180234-G-A DYZ19 **
22226515-A-T 20064629-A-T DYZ19 **
18930663-T-C 16818783-T-C **
18748740-T-C 16636860-T-C **
13958870-G-T 11838164-G-T **
14563947-C-T 12452147-C-T Y131930 **
15699283-G-T 13587403-G-T **
15657248-C-A 13545368-C-A **
15427563-C-A 13315683-C-A **
6769879-T-C 6901838-T-C **
15181716-C-A 13069802-C-A **
15115345-C-A 13003432-C-A **
14934386-G-A 12822451-G-A **
14537999-C-A 12426200-C-A **
15746301-T-G 13634421-T-G **
14502024-C-A 12390229-C-A **
14342008-C-A 12221303-C-A **
14296863-T-G 12176157-T-G **
14284881-A-G 12164175-A-G **
14272948-G-T 12152242-G-T **
14213915-C-A 12093209-C-A **
14029411-A-C 11908705-A-C **
15743623-CT-C 13631743-CT-C **
16033627-G-A 13921747-G-A **
18712816-A-C 16600936-A-C **
17313517-C-A 15201637-C-A **
18660191-T-C 16548311-T-C **
18447704-C-A 16335824-C-A P6_Dst **
18401012-C-A 16289132-C-A P6_Gap **
18253421-G-GGGAA 16141541-G-GGGAA **
18253414-A-C 16141534-A-C **
18086642-G-T 15974762-G-T **
18052782-A-C 15940902-A-C **
17263286-T-A 15151406-T-A **
16272220-C-A 14160340-C-A **
17002769-C-A 14890889-C-A **
16842752-G-T 14730872-G-T **
16620315-C-T 14508435-C-T **
16465906-A-C 14354026-A-C **
16425568-C-T 14313688-C-T **
16425564-C-G 14313684-C-G **
16425556-C-T 14313676-C-T **
7045239-G-T 7177198-G-T **
8827444-A-G 8959403-A-G **
6767755-C-A 6899714-C-A **
7994243-T-C 8126202-T-C Y85557 **
6996823-A-C 7128782-A-C **
17478897-C-A 15367017-C-A **
16379111-C-A 14267231-C-A **
10686658-C-T **
10770597-C-T **
7390576-C-A 7522535-C-A **
10899937-A-T **
14046673-C-A 11925967-C-A **
6977415-C-A 7109374-C-A **
23818052-C-CTAA 21656166-C-CTAA 8×TAA**
10899940-C-A **
10899987-A-C **
7362093-C-A 7494052-C-A **
10964787-C-A **
11029734-A-T **
10770572-CCACCT-C **
17500665-G-T 15388785-G-T **
7996934-C-A 8128893-C-A **
17338576-A-C 15226696-A-C **
10965616-T-C **
10667017-T-G **
10796923-A-T **
56839476-A-T **
9769322-G-T 9931713-G-T **
14464417-G-T 12343690-G-T **
10686640-C-CCACCG **
8159743-C-A 8291702-C-A **
9962092-C-A 10124483-C-A **
7298857-G-A 7430816-G-A **
10796930-T-G **
28549328-C-A 26403181-C-A **
10686655-C-A **
10760444-C-G **
6976518-C-A 7108477-C-A **
9927330-C-A 10089721-C-A **
24611460-GT-G 22465313-GT-G P3_t2 **
10937807-T-C **
11019046-C-A **
19014094-G-T 16902214-G-T **
10686656-C-G **
10660033-C-A **
10667016-T-A **
14491362-C-A 12379559-C-A **
13710846-C-GGAATA 11555170-C-GGAATA **
28808565-T-G 26662418-T-G **
10842265-C-A **
14531954-T-G 12420155-T-G **
16271832-C-A 14159952-C-A **
8214114-C-A 8346073-C-A **
10763061-C-A **
10772437-A-T **
13710876-C-T 11555200-C-T **
13710817-G-C 11555141-G-C **
10772498-C-T **
10653762-T-C **
22226454-T-A 20064568-T-A DYZ19 **
2845221-CA-C 2977180-CA-C 38×A**
19683856-T-A 17571976-T-A P5_Prx **
23779785-A-T 21617899-A-T **
21318263-T-A 19156377-T-A PF4983 **
22342149-A-C 20180263-A-C DYZ19 **
22342109-A-C 20180223-A-C DYZ19 **
10899953-T-C **
28548622-G-T 26402475-G-T **
10667006-T-C **
18926872-CAAAAA-C 16814992-CAAAAA-C 17×A**
10666988-C-CCCTGT **
10666925-A-C **
10670977-A-C **
10753598-C-G **
10753560-A-G **
5824255-C-A 5956214-C-A **
10880307-C-T **
7264897-C-T 7396856-C-T **
23257927-C-CT 21096041-C-CT 9×T**
4302935-C-A 4434894-C-A **
10808685-C-T **
26089868-G-T 23943721-G-T P1_Y1 **
21945286-C-A 19783400-C-A **
10935599-T-TTCCAAA **
21821304-C-A 19659418-C-A **
13710791-C-A 11555115-C-A **
10772447-A-ACTTAT **
10772443-T-TGCAC **
10772426-C-CATTTG **
5635176-C-A 5767135-C-A **
8856891-C-T 8988850-C-T **
8181386-G-T 8313345-G-T **
5443333-C-A 5575292-C-A **
4504856-G-T 4636815-G-T **
18337327-C-A 16225447-C-A P6_Prx **
11665260-G-GA **
10965560-A-G **
10964779-C-T **
6384668-G-T 6516627-G-T **
16063086-C-A 13951206-C-A **
4539033-T-TAA 4670992-T-TAA 24×A**
4016901-C-A 4148860-C-A **
4563992-A-C 4695951-A-C **
4757581-C-A 4889540-C-A **
4841331-G-A 4973290-G-A **
4887639-AAATC-A 5019598-AAATC-A **
5053022-T-TA 5184981-T-TA 8×A**
3265498-G-T 3397457-G-T **
10889310-T-C **
15399454-C-A 13287574-C-A **
27503-G-T **
5274337-C-A 5406296-C-A **
3013166-G-T 3145125-G-T **
3275399-C-G 3407358-C-G **
3286166-AATGATTTTTCCGCATCATTTGATATAATT-A 3418125-AATGATTTTTCCGCATCATTTGATATAATT-A **
3045482-G-T 3177441-G-T **
3330365-C-A 3462324-C-A **
3032990-T-C 3164949-T-C **
3402669-C-A 3534628-C-A **
3832450-C-A 3964409-C-A **
2950340-C-A 3082299-C-A **
15690098-C-A 13578218-C-A **
2945903-G-T 3077862-G-T **
2916932-G-T 3048891-G-T **
2785290-A-G 2917249-A-G **
2693320-C-CA 2825279-C-CA **
4389392-C-A 4521351-C-A **
3905324-C-A 4037283-C-A **
10993329-C-T **
20611325-G-T 18449439-G-T P5_Dst **
5214268-T-C 5346227-T-C **
5362838-T-C 5494797-T-C **
6412685-C-G 6544644-C-G **
23837550-G-T 21675664-G-T **
28521663-C-A 26375516-C-A **
3098-A-C **
10764933-C-A **
14566922-C-A 12455122-C-A **
21262645-C-A 19100759-C-A **
10920282-C-A **
5748636-C-A 5880595-C-A **
19535729-C-A 17423849-C-A **
15324087-C-A 13212205-C-A **
6514966-C-A 6646925-C-A **
6586388-T-A 6718347-T-A **
17053254-C-A 14941374-C-A **
10692616-G-T **
5785696-CT-C 5917655-CT-C **
3252888-C-A 3384847-C-A **
14680374-C-A 12568440-C-A **
15863193-C-A 13751313-C-A **
10765739-C-A **
5450004-G-T 5581963-G-T **
28370142-A-C 26223995-A-C P1_gr2 **
2665535-C-A 2797494-C-A **
15946556-C-A 13834676-C-A **
13237583-C-A 11081907-C-A **
16232309-C-A 14120429-C-A **
21323308-C-A 19161422-C-A **
5393381-G-A 5525340-G-A **
13457731-C-A 11302055-C-A **
56837127-G-T ***
56839511-A-T ***
8398840-CAA-C,CA 8530799-CAA-C,CA 17×A***
10790509-C-CA,CC ***
13457748-T-C 11302072-T-C ***
10686217-C-A ***
13489511-G-T 11333835-G-T ***
24509208-C-A 22363061-C-A ***
15138304-C-A 13026391-C-A Y67790 ***
10678150-T-A ***
7274816-C-A 7406775-C-A 11×ATTT***
10678139-A-T ***
22756109-C-G 20594223-C-G ***
16595919-CTTT-C 14484039-CTTT-C 17×T***
14143107-C-A 12022401-C-A ***
8036252-C-A 8168211-C-A ***
22756084-C-G 20594198-C-G ***
10678164-T-C ***
10808619-T-G ***
15423474-CAAAA-C,CA 13311594-CAAAA-C,CA 16×A***
16590873-CAA-C,CAAA 14478993-CAA-C,CAAA 17×A***
16505949-C-A 14394069-C-A ***
28784396-G-A 26638249-G-A ***
16422175-C-T 14310295-C-T ***
16002936-C-T 13891056-C-T ***
13456637-C-T 11300961-C-T ***
11025434-A-C,CGGTCC ***
15321519-C-A 13209637-C-A ***
13842707-C-T 11722001-C-T ***
6903742-G-T 7035701-G-T ***
15249121-C-A 13137207-C-A ***
14871053-C-A 12759123-C-A ***
10924407-C-A ***
3051753-C-T 3183712-C-T ***
56829826-C-A,G ***
13453478-C-CTTGTTGAATT 11297802-C-CTTGTTGAATT ***
13453702-C-A 11298026-C-A ***
11025408-C-G ***
56734760-T-C ***
3093671-G-A 3225630-G-A ***
13458730-C-G 11303054-C-G ***
2693250-A-G 2825209-A-G ***
23433596-C-T 21271710-C-T ***
14020334-T-TA 11899628-T-TA 10×A***
10851049-T-G ***
10673885-T-A,G ***
19393389-C-T 17281509-C-T ***
19375449-TC-T 17263569-TC-T ***
18933413-C-A 16821533-C-A ***
11660171-C-A ***
22756102-A-G 20594216-A-G ***
18738397-C-A 16626517-C-A ***
10953070-C-A ***
18625639-G-T 16513759-G-T ***
18569986-C-CT 16458106-C-CT ***
14827298-C-A 12715365-C-A ***
17585515-G-GTT 15473635-G-GTT 12×T***
17500656-G-T 15388776-G-T A17134 ***
18985823-C-CT 16873943-C-CT A2074 9×T***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 249198946791877544147658179
Used in age calculations946791877544147658179
Counts of SNPs2019
Variant counts last updated 2019-05-11 10:40:36.



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